View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_high_19 (Length: 414)
Name: NF8901_high_19
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_high_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 13748472 - 13748077
Alignment:
| Q |
19 |
taaaagagttaacagatcaagagaagactcttaaccttggtaatagtgatggaaaagagacagtttctatgagtacaattacaactaccgaaaatcagga |
118 |
Q |
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| T |
13748472 |
taaaagagttaacagatcaagagaagactctcaaccttggtaatagtgatggaaaagagacagttgctatgagtacaattacaactaccgaaaatcagga |
13748373 |
T |
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| Q |
119 |
agtcggtcagcaccaaacaagcaacaaggcagatcatagttcttcggagagttttgagaaactgcaagaaaatgatgtcaaacaagatccatctaagacg |
218 |
Q |
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| T |
13748372 |
agtcggtcagcaccaaacaagcaacaaggcagatcatagttcttcggagagttttaagaaactgcaagaaaatgatgtcaaacaagatccatctaagacg |
13748273 |
T |
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| Q |
219 |
gggaataatcttggcgttgatcacaaagagcaggaaacaacaccaaatgatgaaccggattggcggaaaatgtttctggatggaatgcaggatagagaaa |
318 |
Q |
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| T |
13748272 |
gggaataatcttggagttgatcacaaagagcaggaaacaacaccagatgatgaaccggattggcggaaaatgtttctggatggaatgcaggatagagaaa |
13748173 |
T |
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| Q |
319 |
aagcacttctaaccgagtacactaatactcttcggaattacaaagatgttaagaagaggctcgccgaaatagaggacaaaaatcaagacaaaacct |
414 |
Q |
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| T |
13748172 |
aagcacttctaaccgagtacactaatactcttcggaattacaaagatgttaagaagaggctcgccgaaatagaggacaaaaatcaagacaaaacct |
13748077 |
T |
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