View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_high_22 (Length: 393)
Name: NF8901_high_22
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 37070461 - 37070103
Alignment:
| Q |
19 |
gtaagtgtaattgattttgacaggtttggatttttagaagtttactattcaactcatttttaactaaaattaatcaggacaaacaaatttcgttgaactt |
118 |
Q |
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| T |
37070461 |
gtaagtgtaattgattttgacaggtttggatttttagaagtttactattcaactcatttttaactcaaattaatcaggacaaacaaatttcgttgaactt |
37070362 |
T |
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| Q |
119 |
aaaagagtttaagatcaggaccattcaccaagtgttctacaattgaatgatataaaattatttcaaacatatttacaatctttagttttaggcctttatc |
218 |
Q |
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| T |
37070361 |
aaaagagtttaagatcaggaccattcaccaagtgttctacaattgaatgatataaaattatttcaaacatatttacaatctttagttttaggcctttatc |
37070262 |
T |
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| Q |
219 |
ttttttccttttatatatgacaaatagatgtaatgtttgcagcaacttacacgcattgcactgaattctgctggtgcaaaaacgaggtttaaaagattgg |
318 |
Q |
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| T |
37070261 |
ttttttccttttatatatgacaaatagatgtaatgtttgcagcaacttacacgcattgcactgaattctgctggtgcaaaaacgaggtttaaaagattgg |
37070162 |
T |
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| Q |
319 |
ttcatgataaatcaagacaaagtgattcaaactcactacaactgggagaaggtgacaca |
377 |
Q |
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| T |
37070161 |
ttcatgataaatcaagacaaagtgattcaaactcactacaactaggagaaggtgacaca |
37070103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 37080013 - 37079891
Alignment:
| Q |
219 |
ttttttccttttatatatgacaaatagatgtaatgtttgcagcaacttacacgcattgcactgaattctgctggtgcaaaaacgaggtttaaaagattgg |
318 |
Q |
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| T |
37080013 |
ttttttccttttatatgtaac--acaaatgtaatgtttgcagcaacttactcgtatggctttgaattctgctggtgtaaaaccaaggttgagaaggttgg |
37079916 |
T |
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| Q |
319 |
ttcatgataaatcaagacaaagtga |
343 |
Q |
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| T |
37079915 |
tccatgataaagccagacaaagtga |
37079891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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