View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_high_30 (Length: 338)
Name: NF8901_high_30
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 321
Target Start/End: Complemental strand, 26017679 - 26017387
Alignment:
| Q |
29 |
atcatcatcacttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatg |
128 |
Q |
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||||| |||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||| ||| |
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| T |
26017679 |
atcataatcaattacctgagtttcaattcgttctttttcgtctttccttgaaggtttgtgatccgacgttaaggcctcagcaacacctcctctactgatg |
26017580 |
T |
|
| Q |
129 |
acagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
26017579 |
acagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacacagcaagagccaccattaagatcttcttttaagaaat |
26017480 |
T |
|
| Q |
229 |
ctgaatctgttttgaggtaaccatgtttcactgcttcctcaatatcactctcatctcttctgattacttcttctaacacattcttttccaagt |
321 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26017479 |
ctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagt |
26017387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 26002856 - 26002575
Alignment:
| Q |
40 |
ttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgaca |
139 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| || |||||||| ||||| |
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| T |
26002856 |
ttacctgagtctcaatccgttctttttcgtctttcctcgaaggtttgtgatctgatgttaaggcttcagcagcacctccatggctgatgacagcacgaca |
26002757 |
T |
|
| Q |
140 |
atcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgtt |
239 |
Q |
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||| || |||||||||| ||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
26002756 |
atcaccggcattggacataacaaggttgccatttctaattaatgctgttacacagcaagaaccaccattaagatcttcttttaagaaatctgaatctgtt |
26002657 |
T |
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| Q |
240 |
ttgaggtaaccatgtttcactgcttcctcaatatcactctcatctcttctgattacttcttctaacacattcttttccaagt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26002656 |
ttgaggtaaccatgtttcactgcttcctcaatatcactctcatctcttctgattacttcttctaacacattcttttccaagt |
26002575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 60 - 275
Target Start/End: Complemental strand, 30374166 - 30373951
Alignment:
| Q |
60 |
tccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgacaatcgcctgcattggacacaa |
159 |
Q |
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||||||||||||| ||| ||||| |||||||||||||| |||||||||| ||||||||||| || ||||| || ||||| || ||||| ||||||| |
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| T |
30374166 |
tccttttcgtcttcccttgaaggacggtgatcagatgttagtgcctcagcaacccctcctctactaataacagcacggcaatcaccagcattagacacaa |
30374067 |
T |
|
| Q |
160 |
caaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgttttgaggtaaccatgtttcac |
259 |
Q |
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| | ||||||||||||||| |||||||| || || ||||| ||||||| ||||| | ||| | ||| || ||||| || ||||||||||| | ||||| |
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| T |
30374066 |
ctaagttaccattcctaatgaatgctgtcacacaacaagaaccaccatgtagatcttttttcatgaactcagaatcggtattgaggtaaccgcgcttcac |
30373967 |
T |
|
| Q |
260 |
tgcttcctcaatatca |
275 |
Q |
| |
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||| ||||||| |||| |
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| T |
30373966 |
tgcctcctcaacatca |
30373951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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