View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8901_high_34 (Length: 304)
Name: NF8901_high_34
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 16781504 - 16781225
Alignment:
| Q |
14 |
agagaccgaagtagttggcctgggaccaccaggaaccaaaggagcactggaaggccttgacatcatagtcacttgtgcaataggtttttcggttggtctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16781504 |
agagaccgaagtagttggcctgggaccaccaggaaccaaaggagcactggaaggccttgacatcatagtcacttgtgcaataggtttttcggttggtctt |
16781405 |
T |
|
| Q |
114 |
ggaggtgaagtcttctggatttctgttttaggcacaattgttggttgtgaagcagacgttaaagatgaagatgtatctttacctgtctgttgtgtgacac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16781404 |
ggaggtgaagtcttctggatttctgttttaggcacaattgttggttgtgaagcagacgttaaagatgaagatgtatctttacctgtctgttgtgtgacac |
16781305 |
T |
|
| Q |
214 |
taaaagatgttttcctgacattaacaggtgagggtaagtttctagaaggactcctcggcgaggatggccctactgatgtc |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16781304 |
taaaagatgttttcctgacattaacaggtgagggtaagtttctagaaggactcctcggcgaggatggccctactgatgtc |
16781225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University