View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_high_36 (Length: 284)

Name: NF8901_high_36
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_high_36
NF8901_high_36
[»] chr5 (7 HSPs)
chr5 (51-269)||(1758038-1758256)
chr5 (51-269)||(29568361-29568588)
chr5 (51-269)||(29168142-29168363)
chr5 (100-269)||(29425232-29425404)
chr5 (95-253)||(29569708-29569866)
chr5 (94-253)||(27918583-27918742)
chr5 (51-88)||(29569859-29569896)
[»] chr4 (4 HSPs)
chr4 (51-274)||(27521322-27521545)
chr4 (51-269)||(27461890-27462108)
chr4 (51-269)||(27482029-27482247)
chr4 (51-269)||(18985990-18986208)
[»] chr3 (1 HSPs)
chr3 (51-265)||(25518371-25518588)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 51 - 269
Target Start/End: Original strand, 1758038 - 1758256
Alignment:
Q  51 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1758038 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgccgttcaccatcatcatcatctgc 1758137  T
Q  151 tcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgct 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1758138 tcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcgggaatgct 1758237  T
Q  251 cttagccgctgtgtctctg 269  Q
    |||||||||||||||||||    
T  1758238 cttagccgctgtgtctctg 1758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 51 - 269
Target Start/End: Complemental strand, 29568588 - 29568361
Alignment:
Q  51 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatca---------ctctcacaaaaactctgtcaaacgctgttcaccatcatc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         | |||||||||||||| ||||||||  ||||||||||||    
T  29568588 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcatcatcatcacactcacaaaaactctttcaaacgccattcaccatcatc 29568489  T
Q  142 atcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgc 241  Q
    ||| ||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  29568488 atcttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgt 29568389  T
Q  242 gggaatgctcttagccgctgtgtctctg 269  Q
    ||||||||||||||||||||||||||||    
T  29568388 gggaatgctcttagccgctgtgtctctg 29568361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 51 - 269
Target Start/End: Original strand, 29168142 - 29168363
Alignment:
Q  51 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatca---ctctcacaaaaactctgtcaaacgctgttcaccatcatcatcatc 147  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||   | ||||||| ||||||||||||||  |||||||||||||||| ||    
T  29168142 acaaacagaaacaaagcatgattattccaacatcatcaatgcttcatcatcatcacactcacaacaactctgtcaaacgtcgttcaccatcatcatcttc 29168241  T
Q  148 tgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaat 247  Q
    ||||||||||| ||||  ||| |||||||||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  29168242 tgctcaccaactatcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtgggaat 29168341  T
Q  248 gctcttagccgctgtgtctctg 269  Q
    ||||||||| ||||||||||||    
T  29168342 gctcttagctgctgtgtctctg 29168363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 100 - 269
Target Start/End: Original strand, 29425232 - 29425404
Alignment:
Q  100 tcactctcacaaaaactctgtcaaacgctgttcacc---atcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctc 196  Q
    |||| ||||||| ||||||||||||||| |||||||   ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  29425232 tcacactcacaacaactctgtcaaacgccgttcaccaccatcatcatcatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc 29425331  T
Q  197 acccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctg 269  Q
    |  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29425332 atgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctg 29425404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 95 - 253
Target Start/End: Complemental strand, 29569866 - 29569708
Alignment:
Q  95 catcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatc 194  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||  |||||||||||||    
T  29569866 catcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatc 29569767  T
Q  195 tcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctctt 253  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  29569766 tcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaatgctctt 29569708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 94 - 253
Target Start/End: Original strand, 27918583 - 27918742
Alignment:
Q  94 tcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaat 193  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||  |||||||||||||| || ||||||||||    
T  27918583 tcatcatcacactcacaacaactctgtcaaacgcagttcaccatcatcatcttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaat 27918682  T
Q  194 ctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctctt 253  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||    
T  27918683 ctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaacgctctt 27918742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 29569896 - 29569859
Alignment:
Q  51 acaaacagaaacaatccatgattattccaacatcatca 88  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  29569896 acaaacacaaacaatccatgattattccaacatcatca 29569859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 51 - 274
Target Start/End: Complemental strand, 27521545 - 27521322
Alignment:
Q  51 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  27521545 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgc 27521446  T
Q  151 tcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgct 250  Q
     ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27521445 ccaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgct 27521346  T
Q  251 cttagccgctgtgtctctgctcct 274  Q
    ||||||||||||||||||| ||||    
T  27521345 cttagccgctgtgtctctgatcct 27521322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 51 - 269
Target Start/End: Original strand, 27461890 - 27462108
Alignment:
Q  51 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||      
T  27461890 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatctta 27461989  T
Q  151 tcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgct 250  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  27461990 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgct 27462089  T
Q  251 cttagccgctgtgtctctg 269  Q
    |||||||||||||||||||    
T  27462090 cttagccgctgtgtctctg 27462108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 51 - 269
Target Start/End: Original strand, 27482029 - 27482247
Alignment:
Q  51 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgc 150  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||      
T  27482029 acaaacagaaacaatccatgattattccaacatcatcaatgcctcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatctta 27482128  T
Q  151 tcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgct 250  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27482129 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgct 27482228  T
Q  251 cttagccgctgtgtctctg 269  Q
    |||||||||||||||||||    
T  27482229 cttagccgctgtgtctctg 27482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 51 - 269
Target Start/End: Original strand, 18985990 - 18986208
Alignment:
Q  51 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  18985990 acaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcaccctcacaacaacactgtcaaactctgttcaccatcatcatcatctgc 18986089  T
Q  151 tcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgct 250  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||    
T  18986090 tcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtgggaatact 18986189  T
Q  251 cttagccgctgtgtctctg 269  Q
    |||||||||||||||||||    
T  18986190 cttagccgctgtgtctctg 18986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 51 - 265
Target Start/End: Original strand, 25518371 - 25518588
Alignment:
Q  51 acaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||    
T  25518371 acaaacagaaacaatccatgattattccaacatcatcaatgcttggtcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcttc 25518470  T
Q  148 tgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaat 247  Q
    | ||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||    
T  25518471 tcctcaccaaccatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggtaat 25518570  T
Q  248 gctcttagccgctgtgtc 265  Q
    |||||| || ||||||||    
T  25518571 gctcttcgctgctgtgtc 25518588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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