View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8901_high_42 (Length: 262)
Name: NF8901_high_42
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_high_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 3302670 - 3302912
Alignment:
| Q |
18 |
gagtttgccttagatccaaggtttctaagttaattagattaccgatggatcttggaagaaccgtaactttggtatgactcaagttcaagtaccttaggtg |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3302670 |
gagtttgtcttagatccaaggtttctaagttaattagattaccgatggatcttggaagaaccgtaactttggtatgactcaagttcaagtaccttaggtg |
3302769 |
T |
|
| Q |
118 |
gaaaagatttcccaagttatcaggaatagaattcaatgaagacttctcaaaatcaagcacttttaacagcttaaacttgacagacaatacatccatgaac |
217 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
3302770 |
gaaaagatttcccaaattatcaggaataaaattcaatgaagacttctcaaaatcaagtacttttaaaagcttaaacttgacagataatacatccatgaac |
3302869 |
T |
|
| Q |
218 |
tgtttaggaaattcacctttgtcaaagacaaatacggcacgaa |
260 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3302870 |
tgtttaggcaattcacctttgtcaaagacaaatacggcacgaa |
3302912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 3320962 - 3321202
Alignment:
| Q |
20 |
gtttgccttagatccaaggtttctaagttaattagattaccgatggatcttggaagaaccgtaactttggtatgactcaagttcaagtaccttaggtgga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||| ||||||||||| |||||||||| |||||||||||||||| || |
|
|
| T |
3320962 |
gtttgccttagatccaaggtttctaagttgactagattaccaatggatctcggaagtaccgtaacttttgtatgactcaggttcaagtaccttaggaggt |
3321061 |
T |
|
| Q |
120 |
aaagatttcccaagttatcaggaatagaattcaatgaagacttctcaaaatcaagcacttttaacagcttaaacttgacagacaatacatccatgaactg |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||| || ||||| ||||| |||| ||| |||| |||||||| |
|
|
| T |
3321062 |
aaagatttcccaagttatcaggaatacaattcaacaaagaattctcaaaatcaagtactttcaaaagcttgaacttagcagataatccatcaatgaactg |
3321161 |
T |
|
| Q |
220 |
tttaggaaattcacctttgtcaaagacaaatacggcacgaa |
260 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
3321162 |
tttaggaaattcacctttgtcgaagacaaatatagcacgaa |
3321202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 3309360 - 3309589
Alignment:
| Q |
20 |
gtttgccttagatccaaggtttctaagttaattagattaccgatggatcttggaagaaccgtaactttggtatgactcaagttcaagtaccttaggtgga |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||||||||| |||||| | ||||| ||||||||||| |||||||||| |||||||||||||||| ||| |
|
|
| T |
3309360 |
gtttgccttagatccaatgtttctaagttgactagattaccaatggatttcggaagtaccgtaacttttgtatgactcaggttcaagtaccttaggagga |
3309459 |
T |
|
| Q |
120 |
aaagatttcccaagttatcaggaatagaattcaatgaagacttctcaaaatcaagcacttttaacagcttaaacttgacagacaatacatccatgaactg |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| |||| ||||||||| ||||| || ||||| |||||| |||| ||| |||| |||||||| |
|
|
| T |
3309460 |
aaagatttcccaagttatcaggaatataattcaacaaagaattctgaaaatcaagtactttcaaaagcttgaacttggcagataatccatctatgaactg |
3309559 |
T |
|
| Q |
220 |
tttaggaaattcacctttgtcaaagacaaa |
249 |
Q |
| |
|
|||||||||||| || ||||||| ||||| |
|
|
| T |
3309560 |
cttaggaaattcatctctgtcaaaaacaaa |
3309589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 3356096 - 3356333
Alignment:
| Q |
23 |
tgccttagatccaaggtttctaagttaattagattaccgatggatcttggaagaaccgtaactttggtatgactcaagttcaagtaccttaggtggaaaa |
122 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||| || || ||||||| ||| || ||||| ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
3356096 |
tgccttagatccaaggtttctaaattgattaggttaccaatagaacttggaataactgtgacttttgtacgactcaggttcaagtaccttaggtggaaaa |
3356195 |
T |
|
| Q |
123 |
gatttcccaagttatcaggaatagaattcaatgaagacttctcaaaatcaagcacttttaacagcttaaacttgacagacaatacatccatgaactgttt |
222 |
Q |
| |
|
|| | |||||||||||||||||| ||||||| || ||||||| ||||| ||| | || ||||| ||||||||||| ||| |||||||||| ||||| |
|
|
| T |
3356196 |
gactccccaagttatcaggaatataattcaaaactgaactctcaaagtcaagtactctcaaaagcttgaacttgacagataattcatccatgaaatgttt |
3356295 |
T |
|
| Q |
223 |
aggaaattcacctttgtcaaagacaaatacggcacgaa |
260 |
Q |
| |
|
||| |||||||||||||| || || ||||| ||||||| |
|
|
| T |
3356296 |
aggcaattcacctttgtcgaaaactaatacagcacgaa |
3356333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 3202340 - 3202114
Alignment:
| Q |
23 |
tgccttagatccaaggtttctaagttaattagattaccgatggatcttggaagaaccgtaactttggtatgactcaagttcaagtaccttaggtggaaaa |
122 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||| || ||||| |||||||| || ||||| || | ||||||||||||||| | || ||||||| |
|
|
| T |
3202340 |
tgccttagatccaagctttctaagttgactagattaccaattgatctaggaagaactgtgacttttgtgcggctcaagttcaagtacttcagatggaaaa |
3202241 |
T |
|
| Q |
123 |
gatttcccaagttatcaggaatagaattcaatgaagacttctcaaaatcaagcacttttaacagcttaaacttgacagacaatacatccatgaactgttt |
222 |
Q |
| |
|
|||| |||||||||||||||| | ||||||| || ||||| |||||||||||||| || ||||| ||||| |||||||| |||||||||| | ||| |
|
|
| T |
3202240 |
gattccccaagttatcaggaacaaaattcaacagggagttctcgaaatcaagcactttcaaaagcttgaactttgcagacaatccatccatgaaatcttt |
3202141 |
T |
|
| Q |
223 |
aggaaattcacctttgtcaaagacaaa |
249 |
Q |
| |
|
|| |||||| ||||||| || ||||| |
|
|
| T |
3202140 |
agataattcatctttgtcgaaaacaaa |
3202114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 3220196 - 3220374
Alignment:
| Q |
18 |
gagtttgccttagatccaaggtttctaagttaattagattaccgatggatcttggaagaaccgtaactttggtatgactcaagttcaagtaccttaggtg |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | ||| ||||| |||||||| |||| |||| ||||||| |||||||||| ||||| |||| ||||||| |
|
|
| T |
3220196 |
gagtttgccttaaatccaaggtttctaagttcagtagcttaccaatggatctaggaataaccttaactttcgtatgactcaggttcaggtacgttaggtg |
3220295 |
T |
|
| Q |
118 |
gaaaagatttcccaagttatcaggaatagaattcaatgaagacttctcaaaatcaagcacttttaacagcttaaacttg |
196 |
Q |
| |
|
|||||| || || ||||||||||||| | ||||||| ||| |||||||||||||| ||||| || ||||| |||||| |
|
|
| T |
3220296 |
gaaaaggttccctaagttatcaggaacataattcaaccgagatttctcaaaatcaagtactttcaaaagcttgaacttg |
3220374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 3197093 - 3197276
Alignment:
| Q |
18 |
gagtttgccttagatccaaggtttctaagttaattagattaccgatggatcttggaagaaccgtaactttggtatgactcaagttcaagtaccttaggtg |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||||||| ||||| ||||||||| ||||||| |||||||| | |||||||||| |||| | |
|
|
| T |
3197093 |
gagtttgccttagatccaatgtttctaagttcggtaggttaccgatagatctaggaagaaccataacttttgtatgacttaggttcaagtactttagatt |
3197192 |
T |
|
| Q |
118 |
gaaaagatttcccaagttatcaggaatagaattcaatgaagacttctcaaaatcaagcacttttaacagcttaaacttgacaga |
201 |
Q |
| |
|
|| |||||||||||||| ||||||| | ||||||| |||| | | |||| ||||| ||||||| | ||| ||||||||||| |
|
|
| T |
3197193 |
gagtagatttcccaagttctcaggaacataattcaacaaagaatgcccaaagtcaagaacttttacaaacttgaacttgacaga |
3197276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 3722778 - 3722723
Alignment:
| Q |
185 |
agcttaaacttgacagacaatacatccatgaactgtttaggaaattcacctttgtc |
240 |
Q |
| |
|
||||| |||||| ||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
3722778 |
agcttgaacttggaagataatccatccatgaaccgtttaggaaattcacctttgtc |
3722723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 3722872 - 3722789
Alignment:
| Q |
23 |
tgccttagatccaaggtttctaagttaattagattaccgatggatcttggaagaaccgtaactttggtatgactcaagttcaag |
106 |
Q |
| |
|
|||| |||||||||||||||||| || ||||| ||||| || || ||||||| ||| || ||||| ||| |||||| ||||||| |
|
|
| T |
3722872 |
tgccatagatccaaggtttctaaattgattaggttaccaatagaacttggaataactgtgacttttgtacgactcaggttcaag |
3722789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University