View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8901_high_43 (Length: 261)
Name: NF8901_high_43
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_high_43 |
 | |
|
| [»] chr1 (12 HSPs) |
| |
|
| [»] chr8 (4 HSPs) |
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|
| [»] chr7 (2 HSPs) |
| |
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| [»] scaffold0702 (1 HSPs) |
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| [»] scaffold0536 (1 HSPs) |
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| [»] scaffold0012 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 7798127 - 7797873
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7798127 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
7798029 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7798028 |
aagccaatcagcacttctgttgccttctctcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaggg |
7797929 |
T |
|
| Q |
206 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7797928 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
7797873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 8054930 - 8055184
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8054930 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
8055028 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
8055029 |
aagccaatcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaggg |
8055128 |
T |
|
| Q |
206 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8055129 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
8055184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 28705575 - 28705321
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28705575 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
28705477 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
28705476 |
aagccaatcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaggg |
28705377 |
T |
|
| Q |
206 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28705376 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
28705321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 46018974 - 46019228
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46018974 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
46019072 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46019073 |
aagccaatcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaggg |
46019172 |
T |
|
| Q |
206 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46019173 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
46019228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 49572610 - 49572864
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49572610 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
49572708 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
49572709 |
aagccaatcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaagg |
49572808 |
T |
|
| Q |
206 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49572809 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
49572864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 33695730 - 33695979
Alignment:
| Q |
11 |
cagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcc |
110 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33695730 |
cagagatgtcatcaaagaggag-actattgagctcattatgaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcc |
33695828 |
T |
|
| Q |
111 |
aatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacagggattgt |
210 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
33695829 |
aatcaacacttctgttgtcttctctcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgt |
33695928 |
T |
|
| Q |
211 |
cccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
33695929 |
cccattcatcttgcaattttttgttaccatgtcaataagcatttttgaatc |
33695979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 46077590 - 46077341
Alignment:
| Q |
11 |
cagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcc |
110 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46077590 |
cagagatgtcattaaagaggaa-actattgagctcattaggaggggtctccaaaatagtaaaattctatgaatccatggtaaggctgaagttggcaagcc |
46077492 |
T |
|
| Q |
111 |
aatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacagggattgt |
210 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
46077491 |
aatcaacacttctgttgcctcctctcaaagtgtgatgaacctgaatctgccaattatgattcaaaatattttgaatacgcctaatgagcacaggggttgt |
46077392 |
T |
|
| Q |
211 |
cccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
46077391 |
cccattcatcttgcaattatttgttatcatgacaataaacaattttgaatc |
46077341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 43466894 - 43467135
Alignment:
| Q |
15 |
gatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatcca---tggtaaggctgaagttggcaagcca |
111 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||||||||| ||| |||||| ||| | || | || |||||||||||||||| ||||| || |
|
|
| T |
43466894 |
gatgtcatcaaagaggag-actattgagctcattaggaggggtctcagaaagagtaaatttcaa-gatttcaatatggtaaggctgaagttagcaagtca |
43466991 |
T |
|
| Q |
112 |
atcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacagggattgtc |
211 |
Q |
| |
|
|||| ||||| | ||| |||||||| || |||||||||||||||| |||||||||||||| || ||||||||| |||||| | || ||| |||| |
|
|
| T |
43466992 |
atcaacacttatattgtcttctctccaagtgtgatgaacctgaatgcgccaattacgatttaaaatattttga-----ccgaataaacattggggttgtt |
43467086 |
T |
|
| Q |
212 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaat |
260 |
Q |
| |
|
||||| || |||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
43467087 |
ccatttattttgcaattatttgttaccatgccaataagcaactttgaat |
43467135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 30902158 - 30902057
Alignment:
| Q |
33 |
gactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttc |
132 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||| || |||| ||||| |||||||| || ||||| |
|
|
| T |
30902158 |
gactattgagctctctaggaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcccttc |
30902059 |
T |
|
| Q |
133 |
tc |
134 |
Q |
| |
|
|| |
|
|
| T |
30902058 |
tc |
30902057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 19552467 - 19552292
Alignment:
| Q |
33 |
gactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttc |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||||||| | | | || |||||||||||||| | ||| |||||| | || |||| |||| |
|
|
| T |
19552467 |
gactattgagctcactaggaatggtctccaaaagaataaaattctaacatttcacggtaaggctgaagtcagtaagtcaatcaaaatttatgttaccttt |
19552368 |
T |
|
| Q |
133 |
tctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacagggatt |
208 |
Q |
| |
|
||||||| |||||||||||||||| | | || || ||||||| || |||||| |||||| |||||||| ||||||| |
|
|
| T |
19552367 |
tctcaaagtgtgatgaacctgaatgcacaaactatgattcaagatgttttgattacgcccaatgagcatagggatt |
19552292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 37752627 - 37752575
Alignment:
| Q |
209 |
gtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
37752627 |
gtcccattagtcttgcaattatttgtaaccatgtcaataaacaattttgaatc |
37752575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 19552747 - 19552795
Alignment:
| Q |
213 |
cattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
19552747 |
cattcattttgcaattatttgtaaccatgtcaataactaattttgaatc |
19552795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 24785412 - 24785158
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24785412 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
24785314 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24785313 |
aagccaatcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaggg |
24785214 |
T |
|
| Q |
206 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24785213 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
24785158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 35195580 - 35195834
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35195580 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
35195678 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35195679 |
aagccaatcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaggg |
35195778 |
T |
|
| Q |
206 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35195779 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
35195834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 261
Target Start/End: Original strand, 11596748 - 11596929
Alignment:
| Q |
80 |
gaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatat |
179 |
Q |
| |
|
|||| |||||||||| || | || |||||| | ||| |||||| ||||||||||| || || || |||| |||| ||| |||||||||||| |||| |
|
|
| T |
11596748 |
gaattcatggtaaggttggaattagcaagcgagtcataacttcttttgccttctcttgaagtgagacaaacccgaatgtgcctattacgattcaagatat |
11596847 |
T |
|
| Q |
180 |
tttgaatacgccgaatgagcacagggattgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||| |||||||| | |||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11596848 |
tttgaatacgtcgaatgagtagaggggttgtcccattcatttcgcaattatttgtatccatgtcaataagcaattttgaatc |
11596929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 29514993 - 29515094
Alignment:
| Q |
19 |
tcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagccaatcagca |
118 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||| |||||||||||||| | ||||| ||| |||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
29514993 |
tcatcaaagaggag-actattgagctcattagaaggggtctccaaaacaacaaaatcccaagaatccatggtaaggctggaattagcaagccaatcagca |
29515091 |
T |
|
| Q |
119 |
ctt |
121 |
Q |
| |
|
||| |
|
|
| T |
29515092 |
ctt |
29515094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 6792567 - 6792821
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6792567 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
6792665 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6792666 |
aagccaatcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaggg |
6792765 |
T |
|
| Q |
206 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6792766 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
6792821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 6205666 - 6205412
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6205666 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctaaagttggc |
6205568 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
6205567 |
aagccaatcagcacttctgttgccttctctcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaagg |
6205468 |
T |
|
| Q |
206 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6205467 |
attgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
6205412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 7495 - 7708
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7495 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
7593 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacaggg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7594 |
aagccaatcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaggg |
7693 |
T |
|
| Q |
206 |
attgtcccattcatc |
220 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7694 |
attgtcccattcatc |
7708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 54908123 - 54908273
Alignment:
| Q |
11 |
cagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggt-aaggctgaagttggcaagc |
109 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54908123 |
cagagatgtcatcaaagaagag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaaggctgaagttggcaagc |
54908221 |
T |
|
| Q |
110 |
caatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgcc |
161 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
54908222 |
caatcagcacttcagttgccttctctcaaagtgtgatgaacctgaatacgcc |
54908273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 30970980 - 30970848
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30970980 |
agcaccagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttagc |
30970882 |
T |
|
| Q |
106 |
aagccaatcagcacttctgttgccttctctcaaa |
139 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
30970881 |
aagccaatcaacacttctgttgccttctctcaaa |
30970848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 54908264 - 54908343
Alignment:
| Q |
182 |
tgaatacgccgaatgagcacagggattgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54908264 |
tgaatacgccgaatgagtacaggggttgtcccattcatcttgcaattatttgttatcatatcaataagcaattttgaatc |
54908343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 2520 - 2422
Alignment:
| Q |
6 |
agcagcagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
105 |
Q |
| |
|
|||| |||||||||||| ||||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2520 |
agcaccagagatgtcattaaagatgag-actattgagctcactagaaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
2422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 107079 - 107160
Alignment:
| Q |
11 |
cagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaag |
93 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107079 |
cagagatgtcatcaaagaggag-actattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaag |
107160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 109079 - 109133
Alignment:
| Q |
207 |
ttgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109079 |
ttgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatc |
109133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 34544159 - 34543928
Alignment:
| Q |
11 |
cagagatgtcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcc |
110 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||| || ||| ||||||| | |||||||||| ||||||||||||| | |||||||||| || | |
|
|
| T |
34544159 |
cagatatgtcatcaaagaggat-attattgagctcactagaagaggtatccaaaagaataaaattccaagaatccatggtaacgttgaagttggctagac |
34544061 |
T |
|
| Q |
111 |
aatcagcacttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacagggattgt |
210 |
Q |
| |
|
|||| ||||||||||| |||||| || |||||| ||||| ||| ||||||||| ||||||| ||||||||| | ||||||||||| || |||| |
|
|
| T |
34544060 |
gatcaacacttctgttgttttctcttcaagtgtgattaacctaaatgcgccaattatgattcaatatattttga----gttgaatgagcacatgg-ttgt |
34543966 |
T |
|
| Q |
211 |
cccattcatcttgcaattatttgttatcatgtcaataa |
248 |
Q |
| |
|
||||||||| |||| ||||||||| | ||| ||||||| |
|
|
| T |
34543965 |
cccattcattttgctattatttgtcaccatctcaataa |
34543928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 44938289 - 44938194
Alignment:
| Q |
19 |
tcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagccaatca |
115 |
Q |
| |
|
|||||||| |||| ||||||| ||||| |||||| |||||| ||||| | ||||||||| ||||||||||||||| |||| || ||||| |||||| |
|
|
| T |
44938289 |
tcatcaaa-agggagactattaagctctctaggaagggtctacaaaacaacaaaattccaagaatccatggtaaggttgaaattagcaagtcaatca |
44938194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 41549970 - 41550211
Alignment:
| Q |
19 |
tcatcaaagagggggactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagccaatcagca |
118 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||||||||||||||||| | ||||| ||| ||||||| |||||||||||| || ||||||||||| | | |
|
|
| T |
41549970 |
tcatcaaagaggag-actatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaaggctgaaattagcaagccaatcggta |
41550068 |
T |
|
| Q |
119 |
cttctgttgccttctctcaaaatgtgatgaacctgaatccgccaattacgattcaacatattttgaatacgccgaatgagcacagggattgtcccattca |
218 |
Q |
| |
|
||| | |||| |||| | || | |||||||||| || ||||| |||||| ||| | |||| |||||||| || | | |||| | |||||||| |
|
|
| T |
41550069 |
cttttattgctctctcgccaagtatgatgaacctcaacgtgccaactacgatccaaaagatttctgatacgccgcatcaacgaaggggtcgtcccattag |
41550168 |
T |
|
| Q |
219 |
tcttgcaattatttgttatcatgtcaataagcaattttgaatc |
261 |
Q |
| |
|
|| |||| || ||||| | |||||||||||||||||||||||| |
|
|
| T |
41550169 |
tcctgcagttgtttgtaaccatgtcaataagcaattttgaatc |
41550211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 218447 - 218494
Alignment:
| Q |
87 |
tggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc |
134 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||||||| |
|
|
| T |
218447 |
tggtaaggctgaaattagcaagccaatcagcacttctattgccttctc |
218494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 6262351 - 6262259
Alignment:
| Q |
42 |
gctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagccaatcagcacttctgttgccttctc |
134 |
Q |
| |
|
|||||||||||||| ||| ||||| | ||||||||| ||| || ||||||||||| || |||| |||||||||||||| |||||||||| |
|
|
| T |
6262351 |
gctcactaggagggttcttcaaaacaacaaaattccaataattcacagtaaggctgaaattaacaagtcaatcagcacttctattgccttctc |
6262259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 20679231 - 20679305
Alignment:
| Q |
185 |
atacgccgaatgagcacagggattgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaat |
260 |
Q |
| |
|
||||||||||| | || |||||| ||||| || ||||||||||||||||| | ||||| ||| ||||||||||||| |
|
|
| T |
20679231 |
atacgccgaatcaacaaagggatcgtcccgttaatcttgcaattatttgtaaccatgttaat-agcaattttgaat |
20679305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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