View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_high_45 (Length: 255)
Name: NF8901_high_45
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4698598 - 4698835
Alignment:
| Q |
1 |
gatgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatactaagtttggttggaataatgaaaaggaaaaa |
100 |
Q |
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| T |
4698598 |
gatgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagataagtgaggaggatactaagtttggttggaataatgaaaaggaaaaa |
4698697 |
T |
|
| Q |
101 |
agtgagaaaagacaacaattgtcgcagtttacaagtgaagatggaagtgatattcgtttcacgagcagcaatgatgattacgagactcaaacaagcaaag |
200 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||| |
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| T |
4698698 |
agtgagaaaagacaacaagtgtcgcagtttataagtgaagatggaagtgatattcgtttcactagtagcagtgatgattatgagactcaaacaagcaaag |
4698797 |
T |
|
| Q |
201 |
taagcaccaattcagccagcactgaagagcaacctttg |
238 |
Q |
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| T |
4698798 |
taagcaccaattcagccagcactgaagatcaacctttg |
4698835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 4862596 - 4862382
Alignment:
| Q |
2 |
atgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatactaagtttggttggaataatgaaaaggaaaaaa |
101 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||||||||||||| |
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| T |
4862596 |
atgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaagtctggttggactcatgaaaaggaaaaaa |
4862497 |
T |
|
| Q |
102 |
gtgagaaaagacaacaattgtcgcagtttacaagtgaagatggaagtgatattcgtttcacgagcagcaatgatgattacgagactcaaacaagcaaagt |
201 |
Q |
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| T |
4862496 |
gtgaggaaagacaacaagtgtcacagtttacaagtgaagatggaagtgatgtttgtttcacgagtagcagtgatgattacgggtctcaaacaagcaaggt |
4862397 |
T |
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| Q |
202 |
aagcaccaattcagc |
216 |
Q |
| |
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|||||||| |||||| |
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| T |
4862396 |
aagcaccatttcagc |
4862382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 4785244 - 4785353
Alignment:
| Q |
2 |
atgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatactaagtttggttggaataatgaaaaggaaaaaa |
101 |
Q |
| |
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||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||| |||| ||| | | | || ||||||||||| | |
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| T |
4785244 |
atgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaaga |
4785343 |
T |
|
| Q |
102 |
gtgagaaaag |
111 |
Q |
| |
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||||| |||| |
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| T |
4785344 |
gtgagcaaag |
4785353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 4817673 - 4817782
Alignment:
| Q |
2 |
atgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatactaagtttggttggaataatgaaaaggaaaaaa |
101 |
Q |
| |
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||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||| |||| ||| | | | || ||||||||||| | |
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| T |
4817673 |
atgtcgatgagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaaga |
4817772 |
T |
|
| Q |
102 |
gtgagaaaag |
111 |
Q |
| |
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||||| |||| |
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|
| T |
4817773 |
gtgagcaaag |
4817782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4854844 - 4854920
Alignment:
| Q |
1 |
gatgtcgatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatactaagtttg |
77 |
Q |
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|||||| ||||||||||| |||||| |||||||| |||| ||| | |||| ||||||| |||| ||| |||||||| |
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| T |
4854844 |
gatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggagaatagtaagtttg |
4854920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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