View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_high_49 (Length: 245)
Name: NF8901_high_49
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38512413 - 38512178
Alignment:
| Q |
1 |
ttgaaagtgtgaaatagttttacattgtcgtcaaatcatatctcttcattgagccacaccgctattttaaatcctaaaatatcttcacaaacatttgcag |
100 |
Q |
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| T |
38512413 |
ttgaaagtgtgaaatagttttacattgtcgtcaaatcatatctcttcattgagccacaccgctattttaaatcctaaaatatcttcacaaacatttgcag |
38512314 |
T |
|
| Q |
101 |
agatatatctggatgacagcgtaaaactattttatctattgaactcttcacgaaattaggtataaacacttatgaagctgccactttcaccattgcgcac |
200 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38512313 |
agatatatctggatgacagtgtaaaactattttatccattgaactcttcatgaaattaggtataaacacttatgaagctgccactttcaccattgcgcac |
38512214 |
T |
|
| Q |
201 |
tactttatgtccatatgcacactacttgatgtccat |
236 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
38512213 |
tactttatgtccatatgcacactactttatgtccat |
38512178 |
T |
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