View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8901_low_10 (Length: 772)
Name: NF8901_low_10
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_10 |
 | |
|
| [»] scaffold0157 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0157 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 751
Target Start/End: Complemental strand, 35736 - 34986
Alignment:
| Q |
1 |
accttaatggaataatgactccctaaaggtaatctagaccatcctgttcaaatccatcatcatctcctcataatttgcttataatagtcccataaggaca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35736 |
accttactggaataatgactccctaaaggtaatctagaccatcctgttcagatccatcattatctcctcataatttgcttataatggtcccataaggaca |
35637 |
T |
|
| Q |
101 |
gtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagactaactcaggggaattggctcatgtatgcttactctcacttgaaatagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
35636 |
gtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagactaactcaagggcattggctcatgtatgcttactctcacccgaaatagc |
35537 |
T |
|
| Q |
201 |
ttatcatccacattgtttactgacttgaccgttggagtttgtgtaggtacacgatccccatatttgctctgagaagaaggttggtgttgttggatcttca |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35536 |
ttatcatccacgttgtttactgacttgaccgttggagtttgtgcaggtacacgatccccatttttgctctgagaagaaggttggtgttgttggatcttca |
35437 |
T |
|
| Q |
301 |
actacgcttacttttagcgtctcttttagttgtcctctctctacacaaaattcgccaccaccatccaaactccaatgaatcttgttaagatgtggacgtc |
400 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
35436 |
agtacgcttacttttagcgtctcttttatttgtcctctctctacacaaaactcgccaccgccatccaaaatccaatgaatcttcttaagatttggacgtc |
35337 |
T |
|
| Q |
401 |
gtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctgcaacatgatttttggtcgtggttcgacctct |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
35336 |
gtttatggtggtgcgacgagcagcttgagccctctgcaccacctacctccatatttgtcgatggtcctgcaacacggtttttggcggtggttcgacctct |
35237 |
T |
|
| Q |
501 |
agtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35236 |
agtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactaatggcctgagtttttgtctttttgttgcgtggaagttgatatgagatt |
35137 |
T |
|
| Q |
601 |
tgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35136 |
tgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaat |
35037 |
T |
|
| Q |
701 |
ccgtgttcgcatatggtctgttacgattttgagggatccttggctgtgttg |
751 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
35036 |
tcgtgttcgcatatggtctgttccaattttgagggatccttggatgtgttg |
34986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 627; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 751
Target Start/End: Original strand, 12484741 - 12485491
Alignment:
| Q |
1 |
accttaatggaataatgactccctaaaggtaatctagaccatcctgttcaaatccatcatcatctcctcataatttgcttataatagtcccataaggaca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12484741 |
accttactggaataatgactccctaaaggtaatctagaccatcctgttcagatccatcattatctcctcataatttgcttataatggtcccataaggaca |
12484840 |
T |
|
| Q |
101 |
gtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagactaactcaggggaattggctcatgtatgcttactctcacttgaaatagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
12484841 |
gtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagactaactcaagggcattggctcatgtatgcttactctcacccgaaatagc |
12484940 |
T |
|
| Q |
201 |
ttatcatccacattgtttactgacttgaccgttggagtttgtgtaggtacacgatccccatatttgctctgagaagaaggttggtgttgttggatcttca |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12484941 |
ttatcatccacgttgtttactgacttgaccgttggagtttgtgcaggtacacgatccccatttttgctctgagaagaaggttggtgttgttggatcttca |
12485040 |
T |
|
| Q |
301 |
actacgcttacttttagcgtctcttttagttgtcctctctctacacaaaattcgccaccaccatccaaactccaatgaatcttgttaagatgtggacgtc |
400 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
12485041 |
agtacgcttacttttagcgtctcttttatttgtcctctctctacacaaaactcgccaccgccatccaaaatccaatgaatcttcttaagatttggacgtc |
12485140 |
T |
|
| Q |
401 |
gtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctgcaacatgatttttggtcgtggttcgacctct |
500 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
12485141 |
gtttatggtggtgcgacgagcagcttgagccctctgcaccacctacctccatatttgtcgatggtcctgcaacacggtttttggcggtggttcgacctct |
12485240 |
T |
|
| Q |
501 |
agtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12485241 |
agtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactaatggcctgagtttttgtctttttgttgcgtggaagttgatatgagatt |
12485340 |
T |
|
| Q |
601 |
tgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12485341 |
tgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaat |
12485440 |
T |
|
| Q |
701 |
ccgtgttcgcatatggtctgttacgattttgagggatccttggctgtgttg |
751 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
12485441 |
tcgtgttcgcatatggtctgttccaattttgagggatccttggatgtgttg |
12485491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 715
Target Start/End: Original strand, 12468624 - 12469331
Alignment:
| Q |
8 |
tggaataatgactccctaaaggtaatctagaccatcctgttcaaatccatcatcatctcctcataatttgcttataatagtcccataaggacagtagtcc |
107 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||| |||||| | ||| |
|
|
| T |
12468624 |
tggaataatgaccccctggtggcaatctagaccatcatgtttggatccatcatcatctcctcataatttgcttacagaggtcccatgaggacaattttcc |
12468723 |
T |
|
| Q |
108 |
aggtaaaggttcaaggaccgaaaccctaaacctacacaataagactaactcaggggaattggctcatgtatgcttactctcacttgaaatagcttatcat |
207 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
12468724 |
aggtaaaggttcaaggaccaaaaccctaaacctacacaataagactaactcaagggcattggctcaagtatgcttactctcacccgaaataagttatcac |
12468823 |
T |
|
| Q |
208 |
ccacattgtttactgacttgaccgttggagtttgtgtaggtacacgatccccatatttgctctgagaagaaggttggtgttgttggatcttcaactacgc |
307 |
Q |
| |
|
|||| | ||||||| |||||| ||||||| | |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
12468824 |
ccacgtcgtttactaacttgatcgttggattgtgtgcaggtacaccatccccatatttgccctgagaagaaggttggtgttgttggatcttcaaataccc |
12468923 |
T |
|
| Q |
308 |
ttacttttagcgtctcttttagttgtcctctctctacacaaaattcgccaccaccatccaaactccaatgaatcttgttaagatgtggacgtcgtttatg |
407 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||||||| |||||||| ||| ||| | |||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
12468924 |
ttacttttagcgtctcttttctctgccatctctctacacaaaactcgccaccgccacccagaatccaatacatcttcttaagatgtaaacgtcgtttatg |
12469023 |
T |
|
| Q |
408 |
gtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctgcaacatgatttttggtcgtggttcgacctctagtgggg |
507 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||||||||||| || |||| |||||||| | ||| | | ||||||||| |||||||||| |
|
|
| T |
12469024 |
gtggtgcgatgagcatcttgagccctctgcaccacctacctccatatttgacgatagtcctgcacggcggtttgttgcggtggttcgagctctagtggga |
12469123 |
T |
|
| Q |
508 |
tcgtaatatgtgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttc |
607 |
Q |
| |
|
|| |||||| |||||||||||||||||| | |||||||||| |||||| |||||| ||||||||||| |||| |||||||| |||| ||||||| |
|
|
| T |
12469124 |
tcataatatatgttgcggctttgtttcttgggttattcaacactgatggccttagttttcatctttttgttgtgtggttgttgataccagatatgttttc |
12469223 |
T |
|
| Q |
608 |
tctcttggtgaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgtt |
707 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |||| |
|
|
| T |
12469224 |
tctcttggtgaggttttgttttctcgcaacgtgggttgtgatggactggtcacgatggtggtgatgaatatgtcacgattggtgataccaaatcaatgtt |
12469323 |
T |
|
| Q |
708 |
cgcatatg |
715 |
Q |
| |
|
|| ||||| |
|
|
| T |
12469324 |
cgtatatg |
12469331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 715
Target Start/End: Original strand, 12465985 - 12466687
Alignment:
| Q |
8 |
tggaataatgactccctaaaggtaatctagaccatcctgttcaaatccatcatcatctcctcataatttgcttataatagtcccataaggacagtagtcc |
107 |
Q |
| |
|
|||||||||||| |||| | | |||||||||||||||||| |||||| ||||||||||||||||||||||| | | ||||||| |||||||| ||| |
|
|
| T |
12465985 |
tggaataatgaccccctgatgtcaatctagaccatcctgtttggatccattatcatctcctcataatttgcttacagtggtcccatgaggacagttttcc |
12466084 |
T |
|
| Q |
108 |
aggtaaaggttcaaggaccgaaaccctaaacctacacaataagactaactcaggggaattggctcatgtatgcttactctcacttgaaatagcttatcat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||| ||| ||||||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
12466085 |
tggtaaaggttcaaggaccgaaaccctaaacctacacattatgactaactcaagggcattggctcaggtatgcttactctcactcgaaatacgttatcac |
12466184 |
T |
|
| Q |
208 |
ccacattgtttactgacttgaccgttggagtttgtgtaggtacacgatccccatatttgctctgagaagaaggttggtgttgttggatcttcaactacgc |
307 |
Q |
| |
|
||| | ||||||| |||||| ||||||| | |||| |||||||| |||||||||||||| |||| || || |||||||||| ||||||||||| ||| | |
|
|
| T |
12466185 |
ccaagtcgtttactaacttgatcgttggattgtgtgcaggtacaccatccccatatttgccctga-aaaaatgttggtgttgatggatcttcaaataccc |
12466283 |
T |
|
| Q |
308 |
ttacttttagcgtctcttttagttgtcctctctctacacaaaattcgccaccaccatccaaactccaatgaatcttgttaagatgtggacgtcgtttatg |
407 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||||||| |||||||||||| || | |||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
12466284 |
ttacttttagcgtctcttttctctgccatctctctacacaaaactcgccaccaccacccggaatccaatacatc---ttaagatgtagacgtcgtttatg |
12466380 |
T |
|
| Q |
408 |
gtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctgcaacatgatttttggtcgtggttcgacctctagtgggg |
507 |
Q |
| |
|
|||||| || ||||| |||| |||||||||||||||||||||||||| || | || ||||| || | ||||| | ||||||||| ||||| |||| |
|
|
| T |
12466381 |
gtggtgtgatgagcatcttgagccctctgcaccacctacctccatatttgacaatagtcctacacggcggttttttgcggtggttcgagctctaatggga |
12466480 |
T |
|
| Q |
508 |
tcgtaatatgtgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttc |
607 |
Q |
| |
|
| |||||||||||||| ||||||||||||| | |||||||||| |||||| |||||| ||||||||||| |||| |||||||| |||| ||||||| |
|
|
| T |
12466481 |
ttgtaatatgtgttgcagctttgtttctctggttgttcaacactgatggccttagttttcatctttttgttgtgtggttgttgataccagatatgttttc |
12466580 |
T |
|
| Q |
608 |
tctcttggtgaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgtt |
707 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| || ||||||||| |||||||||||||||||| |||||||| |||| |||||||||||| |||| |
|
|
| T |
12466581 |
tctcttggtgaggttttgttttctcgcaatgtgggttgtgatggactggtcacgatggtggtgatg-atatgtcacgattggtgataccaaatcaatgtt |
12466679 |
T |
|
| Q |
708 |
cgcatatg |
715 |
Q |
| |
|
|| ||||| |
|
|
| T |
12466680 |
cgtatatg |
12466687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 379 - 617
Target Start/End: Complemental strand, 6410395 - 6410151
Alignment:
| Q |
379 |
atcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctgcaacatgat |
478 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||| || ||| ||||||||||| || |
|
|
| T |
6410395 |
atcttcttaagatgtagacgtcgtttatggtggtgcgacgagcggcttgtgccctccgcatcacctacctccaaatatgttgatggtcctgc-acggcgg |
6410297 |
T |
|
| Q |
479 |
ttttggtcgtggt--------tcgacctctagtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtc |
570 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||| | |||||||| ||| ||||||||| ||| |||||| ||| |||||||| |||| ||| |
|
|
| T |
6410296 |
ttttggcggtggttccagcggtcgacctcttgtggggtcgtgaattgtgttgcagctctgtttctctggccgttcaactctgatggcctgatttttcgtc |
6410197 |
T |
|
| Q |
571 |
tttttgttgcgtggatgttgatatgagatttgttttctctcttggtg |
617 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||||||||||||| |
|
|
| T |
6410196 |
-ttttgttgcgtggtggctgatacaagattcaatttctctcttggtg |
6410151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 400 - 466
Target Start/End: Complemental strand, 38093724 - 38093658
Alignment:
| Q |
400 |
cgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtc |
466 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
38093724 |
cgtttatggtggtgcgacgagcggcttaagccctctgcaccacctacctccagatctgccgatggtc |
38093658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 676
Target Start/End: Original strand, 47518421 - 47518480
Alignment:
| Q |
617 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaat |
676 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
47518421 |
gaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatgaat |
47518480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 55729202 - 55729142
Alignment:
| Q |
406 |
tggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtc |
466 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||||||||| || || |||||||| |
|
|
| T |
55729202 |
tggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatatgccgatggtc |
55729142 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 667
Target Start/End: Original strand, 23054177 - 23054254
Alignment:
| Q |
597 |
gatttgttttctctcttggt-------gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtg |
667 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
23054177 |
gatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacgatggtg |
23054254 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 379 - 469
Target Start/End: Original strand, 38530932 - 38531022
Alignment:
| Q |
379 |
atcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctg |
469 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||||||||| ||||| |||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
38530932 |
atcttcttaagatgtagaggtcgtttatggtggtgcgacgagcggcttgagccctccgcaccacctacttccagatatgtcgatggtcctg |
38531022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 673
Target Start/End: Original strand, 1551571 - 1551624
Alignment:
| Q |
620 |
gttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
673 |
Q |
| |
|
||||||||| |||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
1551571 |
gttatgtttgctcgcaacataggtggtgatggatcagtcacgatggtggtgatg |
1551624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 17281887 - 17281970
Alignment:
| Q |
597 |
gatttgttttctctcttggt-------gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
673 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| | ||||||||||| ||||||| |||||||||||| |
|
|
| T |
17281887 |
gatttgttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatg |
17281970 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 468
Target Start/End: Complemental strand, 32059028 - 32058960
Alignment:
| Q |
400 |
cgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcct |
468 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
32059028 |
cgtttatggtggtgcgaccagcggcttgagccctccgcaccacctacctccagatctgtcgatggtcct |
32058960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 673
Target Start/End: Complemental strand, 34118124 - 34118068
Alignment:
| Q |
617 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
673 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||| | |||||||||||||||||| |
|
|
| T |
34118124 |
gaggttatgtttgctcgcaacataggtggtgatggatcggtcacgatggtggtgatg |
34118068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 380 - 469
Target Start/End: Complemental strand, 30845943 - 30845854
Alignment:
| Q |
380 |
tcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctg |
469 |
Q |
| |
|
|||| ||||||||| || | |||||||||||||||||||||| ||||| ||||| |||||||||||||||| || || ||||||||||| |
|
|
| T |
30845943 |
tcttcttaagatgtagaggccgtttatggtggtgcgacgagcggcttgaaccctccgcaccacctacctccagatttgccgatggtcctg |
30845854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 379 - 466
Target Start/End: Original strand, 42449 - 42536
Alignment:
| Q |
379 |
atcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtc |
466 |
Q |
| |
|
||||| ||| ||||| || || ||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
42449 |
atcttcttacgatgtagaggttgtttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtc |
42536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 6444433 - 6444347
Alignment:
| Q |
385 |
ttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctgca |
471 |
Q |
| |
|
||||||| | || |||||||||||||||| ||||||| ||||| | |||| ||| || ||||||||| |||||| |||||||||||| |
|
|
| T |
6444433 |
ttaagatctagatgtcgtttatggtggtgtgacgagcggcttgtgtcctccgcatcagctacctccagatctgtggatggtcctgca |
6444347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 673
Target Start/End: Complemental strand, 10408977 - 10408921
Alignment:
| Q |
617 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
673 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||| | |||||||||||||||||| |
|
|
| T |
10408977 |
gaggttatgtttgctcgcaacataggtggtgatggaacggtcacgatggtggtgatg |
10408921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 669
Target Start/End: Original strand, 27170059 - 27170111
Alignment:
| Q |
617 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggt |
669 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
27170059 |
gaggttatgtttgctcgcaacgtaagtggtgatggatcggtcacgatggtggt |
27170111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 673
Target Start/End: Complemental strand, 18697085 - 18697029
Alignment:
| Q |
617 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
673 |
Q |
| |
|
|||||||||||| | |||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
18697085 |
gaggttatgtttgcccgcaacataggtggtgatggatcagtcacgatggtggtgatg |
18697029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 371 - 465
Target Start/End: Complemental strand, 12156900 - 12156806
Alignment:
| Q |
371 |
tccaatgaatcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggt |
465 |
Q |
| |
|
|||||| |||||| ||| ||||| || | |||| |||||||||||||||| |||| ||| || |||||||||||||||| ||| | ||||||| |
|
|
| T |
12156900 |
tccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcggcttaagccttccgcaccacctacctccagatccgccgatggt |
12156806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 51264155 - 51264197
Alignment:
| Q |
107 |
caggtaaaggttcaaggaccgaaaccctaaacctacacaataa |
149 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
51264155 |
caggtaaaggttcaaggaccaaaaacctaaacctacactataa |
51264197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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