View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_100 (Length: 319)
Name: NF8901_low_100
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 311
Target Start/End: Original strand, 43034656 - 43034962
Alignment:
| Q |
5 |
gagcaatgaagagagtagcatcaggcatgcaagtcacgtgccgtacccccacttgtacaacaggtttacttacttttccttcaccactcacagttgaacc |
104 |
Q |
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| T |
43034656 |
gagcaatgaagagagcagcatcaggcatgcaagtcacgtgccgtacccccacttgtacaacaggtttacttacttttccttcaccactcacagttgaacc |
43034755 |
T |
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| Q |
105 |
catcacaaacccttcacccggtaaccactttgaacccaatattgcagaatcaatgcagaatttaccaccttttttcacactcactgtgccttcagcaatt |
204 |
Q |
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| T |
43034756 |
catcacaaacccttcacccggtaaccactttgaacccaatattgcagaatcaatgcagaatttaccaccttttttcacactcactgtgccttcagcaatt |
43034855 |
T |
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| Q |
205 |
ggttttgcattaacaggtccattgtcagagaaaagctctatcttgtagcccaagccatcgataggacctctctctcaccatgcctcgagacgaccccatg |
304 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
43034856 |
ggtattgcattaacaggtccattgtcagagaaaagctctaccttgtagcccaagccatcgataggacctctctctcgccatgcctcgagatgaccccatg |
43034955 |
T |
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| Q |
305 |
atgtcca |
311 |
Q |
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|| |||| |
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| T |
43034956 |
atttcca |
43034962 |
T |
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