View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_104 (Length: 313)
Name: NF8901_low_104
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_104 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 13141162 - 13141459
Alignment:
| Q |
16 |
ttcgatacatctactttgagagcaaggttcccaccgaagcactttttatccagcacattgattgcttcagaggtaagggcaatgcaatctcttatgttcc |
115 |
Q |
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| T |
13141162 |
ttcgatacatctactttgagagcaaggttcccaccgaagcactttttatccagcacattgattgcttcagaggtaagggcaatgcaatctcttatgttcc |
13141261 |
T |
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| Q |
116 |
tgccttgaacaaaaactctttgttcttttgagatgatactaggaagaatttttgctaacctatcagcaagaactttgctgatgattttgaatttaaaatt |
215 |
Q |
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| T |
13141262 |
tgccttgaacaaaacctctttgttcttttgagatgatactaggaagaatttttgctaacctatcagcaagaactttgctgatgattttgaatttgaaatt |
13141361 |
T |
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| Q |
216 |
ggctagagcaataggtcgaaattgatcaatactatcagcattgggagtttttggaataagaatgattgagttagcattgaaattggtggggaacaaac |
313 |
Q |
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| T |
13141362 |
ggctagagcaataggtcgaaattgatcaatactatcagcattgggagtttttggaataagaatgattgagttagcattgaaattggtgggaaacaaac |
13141459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 24559862 - 24560159
Alignment:
| Q |
16 |
ttcgatacatctactttgagagcaaggttcccaccgaagcactttttatccagcacattgattgcttcagaggtaagggcaatgcaatctcttatgttcc |
115 |
Q |
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| T |
24559862 |
ttcgatacatctactttgagagcaaggttcccaccgaagcactttttatccagcacattgattgcttcagaggtaagggcaatgcaatctcttatgttcc |
24559961 |
T |
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| Q |
116 |
tgccttgaacaaaaactctttgttcttttgagatgatactaggaagaatttttgctaacctatcagcaagaactttgctgatgattttgaatttaaaatt |
215 |
Q |
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| T |
24559962 |
tgccttgaacaaaacctctttgttcttttgagatgatactaggaagaatttttgctaacctatcagcgagaactttgctgatgattttgaatttgaaatt |
24560061 |
T |
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| Q |
216 |
ggctagagcaataggtcgaaattgatcaatactatcagcattgggagtttttggaataagaatgattgagttagcattgaaattggtggggaacaaac |
313 |
Q |
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| T |
24560062 |
ggctagagcaataggtcgaaattgatcaatactatcagcattgggagtttttggaataagaatgattgagttagcattgaaattggtgggaaacaaac |
24560159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 260
Target Start/End: Original strand, 20751280 - 20751503
Alignment:
| Q |
37 |
gcaaggttcccaccgaagcactttttatccagcacattgattgcttcagaggtaagggcaatgcaatctcttatgttcctgccttgaacaaaaactcttt |
136 |
Q |
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| T |
20751280 |
gcaaggttcccaccaaagcactttttatcaagaacattaactgcttcagaggctagagcaatgcagtctttaatgttcctgcctcgtatgaaacctcttt |
20751379 |
T |
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| Q |
137 |
gttcttttgagatgatactaggaagaatttttgctaacctatcagcaagaactttgctgatgattttgaatttaaaattggctagagcaataggtcgaaa |
236 |
Q |
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| T |
20751380 |
gctctttagaaatgatacctggtaatattattgccaatctgtctgcaagtacctttgtaataattttaaatttaaaattggcaagagcaatgggtctaaa |
20751479 |
T |
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| Q |
237 |
ttgatcaatactatcagcattggg |
260 |
Q |
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| T |
20751480 |
ttgatcaatggtgtcagcattggg |
20751503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 34244787 - 34245053
Alignment:
| Q |
30 |
tttgagagcaaggttcccaccgaagcactttttatccagcacattgattgcttcagaggtaagggcaatgcaatctcttatgttcctgccttgaacaaaa |
129 |
Q |
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| T |
34244787 |
tttgagagcaaggtttcccccaaaacttttgttatccaaaacattgatagcttcagatgtaagagcaatacagtctcttatgttccttccttgtacaaac |
34244886 |
T |
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| Q |
130 |
actctttgttcttttgagatgatactaggaagaatttttgctaacctatcagcaagaactttgctgatgattttgaatttaaaattggctagagcaatag |
229 |
Q |
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| T |
34244887 |
cctctttgttccttagaaataatgctaggaagaatctttgctaacctatctgctaaaaccttgttgataattttgaatttaaaattgaccaaagcaatag |
34244986 |
T |
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| Q |
230 |
gtcgaaattgatcaatactatcagcattgggagtttttggaataagaatgattgagttagcattgaa |
296 |
Q |
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| T |
34244987 |
ttctgtattgatctacactatcagcattgggagtctttgggataagtatgatagagtttgcattgaa |
34245053 |
T |
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