View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_105 (Length: 311)

Name: NF8901_low_105
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_105
NF8901_low_105
[»] chr2 (4 HSPs)
chr2 (1-297)||(37830859-37831155)
chr2 (86-125)||(13337302-13337341)
chr2 (98-146)||(1269490-1269538)
chr2 (100-156)||(14405195-14405251)
[»] chr1 (5 HSPs)
chr1 (86-247)||(15840926-15841091)
chr1 (5-52)||(8133528-8133575)
chr1 (90-176)||(41403016-41403102)
chr1 (86-156)||(46814481-46814551)
chr1 (210-255)||(27335501-27335546)
[»] chr7 (3 HSPs)
chr7 (1-72)||(28006672-28006743)
chr7 (224-257)||(17802972-17803005)
chr7 (100-156)||(6584906-6584962)
[»] chr6 (3 HSPs)
chr6 (87-159)||(34105407-34105479)
chr6 (208-253)||(34105321-34105366)
chr6 (90-176)||(20970423-20970509)
[»] scaffold0236 (1 HSPs)
scaffold0236 (17-123)||(10347-10452)
[»] chr4 (6 HSPs)
chr4 (86-142)||(2792288-2792344)
chr4 (103-163)||(31050693-31050753)
chr4 (208-262)||(2165395-2165449)
chr4 (86-175)||(2165486-2165574)
chr4 (88-125)||(32057141-32057178)
chr4 (189-253)||(46879831-46879896)
[»] scaffold0620 (1 HSPs)
scaffold0620 (87-158)||(3825-3896)
[»] scaffold0572 (1 HSPs)
scaffold0572 (90-176)||(6273-6359)
[»] scaffold0127 (1 HSPs)
scaffold0127 (90-176)||(31233-31319)
[»] chr3 (6 HSPs)
chr3 (180-237)||(24992026-24992084)
chr3 (188-241)||(30127170-30127224)
chr3 (190-263)||(51065963-51066037)
chr3 (86-154)||(19176501-19176569)
chr3 (86-125)||(19295879-19295918)
chr3 (86-154)||(43012374-43012442)
[»] scaffold0200 (1 HSPs)
scaffold0200 (98-156)||(19380-19438)
[»] chr5 (1 HSPs)
chr5 (218-263)||(28765752-28765797)
[»] scaffold0119 (1 HSPs)
scaffold0119 (98-146)||(42164-42212)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 37831155 - 37830859
Alignment:
Q  1 tgagccaaatttcaacactcattcggattccaccaccaatcaatcctcggttcgtcgtagaagacaccaaaatatgacnnnnnnncttgagtcaagaaac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||||||    
T  37831155 tgagccaaatttcaacactcattcagattccaccaccaatcaatcctcggttcgtcgtagaagacaccaaaatatggcaaaaaaacttgagtcaagaaac 37831056  T
Q  101 tgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcactagggcgtccctcaactccacgttcggataagacaccttaacc 200  Q
    ||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37831055 tgacttcagatttcgaatcaaaagtgatcggcttacctgactttagaaacaaatcactagggcgtccctcaactccacgttcggataagacaccttaacc 37830956  T
Q  201 atcccataacttgaaactagacactaacttccgatctcgaagtaaaagtgatcggcctaccaggatgttttctaactagagatatggggatgtattt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  37830955 atcccataacttgaaactagacactaacttccgatctcgaagtaaaagtgataggcctaccaagatgttttctaactagagatatggggatgtattt 37830859  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 13337341 - 13337302
Alignment:
Q  86 cttgagtcaagaaactgacttccgatttcgaatcaaaagt 125  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  13337341 cttgagtcaaagaactgacttccgatttcgaatcaaaagt 13337302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 1269538 - 1269490
Alignment:
Q  98 aactgacttccgatttcgaatcaaaagtcaccggcttaccagactttag 146  Q
    |||||||||||||| ||||||||||||| | ||||  ||||||||||||    
T  1269538 aactgacttccgatctcgaatcaaaagtgatcggcccaccagactttag 1269490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 14405251 - 14405195
Alignment:
Q  100 ctgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatca 156  Q
    |||||| ||||| ||||||||||||| | ||||  |||||||||||||| |||||||    
T  14405251 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatca 14405195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 15840926 - 15841091
Alignment:
Q  86 cttgagtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcactagggcgtccctcaactcc---acgttc 182  Q
    ||||| |||||||||||||| ||||| ||||||||||||| | | ||  |||||||| |||||||||||| ||| ||   |||||| ||||   || |||    
T  15840926 cttgaatcaagaaactgactcccgatctcgaatcaaaagtgatcagcccaccagactctagaaacaaatccctaaggaacccctcatctcccggacattc 15841025  T
Q  183 ggataagacaccttaaccatc-ccataacttgaaactagacactaacttccgatctcgaagtaaaa 247  Q
    ||| || |||||||||||||| | | ||||||||||||||| ||||||||||||||||||| ||||    
T  15841026 ggagaaaacaccttaaccatcacaaaaacttgaaactagacgctaacttccgatctcgaagcaaaa 15841091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 8133575 - 8133528
Alignment:
Q  5 ccaaatttcaacactcattcggattccaccaccaatcaatcctcggtt 52  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||    
T  8133575 ccaaatttcagcactcattcgaattccaccaccaattaatcctcggtt 8133528  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 41403016 - 41403102
Alignment:
Q  90 agtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcactagggcgtccctcaactcc 176  Q
    ||||||||||||||||| ||   |||||||||| || | ||||| |||||||| |||||||||||||||| | |  |||||||||||    
T  41403016 agtcaagaaactgactttcgtcctcgaatcaaatgtgatcggctcaccagactctagaaacaaatcactaagtcacccctcaactcc 41403102  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 46814481 - 46814551
Alignment:
Q  86 cttgagtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatca 156  Q
    |||||| ||| || |||||| ||||| ||||||||||||| | ||||  |||||||||||||| |||||||    
T  46814481 cttgagccaaaaagctgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatca 46814551  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 27335501 - 27335546
Alignment:
Q  210 cttgaaactagacactaacttccgatctcgaagtaaaagtgatcgg 255  Q
    ||||||||||| |||||| |||||||||||||  ||||||||||||    
T  27335501 cttgaaactaggcactaatttccgatctcgaaccaaaagtgatcgg 27335546  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28006743 - 28006672
Alignment:
Q  1 tgagccaaatttcaacactcattcggattccaccaccaatcaatcctcggttcgtcgtagaagacaccaaaa 72  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||    
T  28006743 tgagccaaattcccacactcattcggattccaccaccaatcaatcctaggtttgacggagaagacaccaaaa 28006672  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 17802972 - 17803005
Alignment:
Q  224 ctaacttccgatctcgaagtaaaagtgatcggcc 257  Q
    ||||||||||||||||||| ||||||||||||||    
T  17802972 ctaacttccgatctcgaagcaaaagtgatcggcc 17803005  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 6584962 - 6584906
Alignment:
Q  100 ctgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatca 156  Q
    |||||| ||||| ||||||||||||| | ||||  |||||||||||||| |||||||    
T  6584962 ctgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatca 6584906  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 34105479 - 34105407
Alignment:
Q  87 ttgagtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcacta 159  Q
    ||||||||||||||||||| ||||| ||||||||||||| | ||||  |||| ||| ||||||||||||||||    
T  34105479 ttgagtcaagaaactgactcccgatctcgaatcaaaagtgatcggcccaccaaactctagaaacaaatcacta 34105407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 34105366 - 34105321
Alignment:
Q  208 aacttgaaactagacactaacttccgatctcgaagtaaaagtgatc 253  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||    
T  34105366 aacttgaaactagacactaacttccgatctcgaagcaaaaatgatc 34105321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 20970423 - 20970509
Alignment:
Q  90 agtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcactagggcgtccctcaactcc 176  Q
    ||||||||||||||||| ||   |||||||||| || | ||||| |||||||| |||||||||||||||| | |  |||||||||||    
T  20970423 agtcaagaaactgactttcgtcctcgaatcaaatgtgatcggctcaccagactctagaaacaaatcactaagtcacccctcaactcc 20970509  T

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Target: scaffold0236 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 10347 - 10452
Alignment:
Q  17 actcattcggattccaccaccaatcaatcctcggttcgtcgtagaagacaccaaaatatgacnnnnnnncttgagtcaagaaactgacttccgatttcga 116  Q
    ||||||| |||||||||||||||||||||||||||| ||   |||||||||||||| | | |       ||||||||||||||||||||  |||| ||||    
T  10347 actcatttggattccaccaccaatcaatcctcggtttgttagagaagacaccaaaacaag-ccaaacaacttgagtcaagaaactgactctcgatctcga 10445  T
Q  117 atcaaaa 123  Q
    |||||||    
T  10446 atcaaaa 10452  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 2792288 - 2792344
Alignment:
Q  86 cttgagtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagact 142  Q
    |||||||||||||||||||||||||| ||||||||||||| | |||| ||| |||||    
T  2792288 cttgagtcaagaaactgacttccgatctcgaatcaaaagtgatcggcctactagact 2792344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 31050693 - 31050753
Alignment:
Q  103 acttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcactagggc 163  Q
    ||||||||| ||||||||||||| | ||||  |||||||||||||| ||||||| ||||||    
T  31050693 acttccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaatcagtagggc 31050753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 2165449 - 2165395
Alignment:
Q  208 aacttgaaactagacactaacttccgatctcgaagtaaaagtgatcggcctacca 262  Q
    ||||||||| ||||||||||||| |||| | |||| |||||||||||||| ||||    
T  2165449 aacttgaaaatagacactaactttcgatattgaagcaaaagtgatcggcccacca 2165395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 2165574 - 2165486
Alignment:
Q  86 cttgagtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcactagggcgtccctcaactc 175  Q
    |||||||||||||||||||| ||||| || |||||||||  | ||||  |||| ||| |||||||||||||| | ||| || ||||||||    
T  2165574 cttgagtcaagaaactgactcccgatctcaaatcaaaagcgatcggc-caccaaactctagaaacaaatcaccaaggcatcactcaactc 2165486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 32057178 - 32057141
Alignment:
Q  88 tgagtcaagaaactgacttccgatttcgaatcaaaagt 125  Q
    |||||||||||||||||||||||| || ||||||||||    
T  32057178 tgagtcaagaaactgacttccgatctcaaatcaaaagt 32057141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 46879896 - 46879831
Alignment:
Q  189 gacaccttaaccatcccataa-cttgaaactagacactaacttccgatctcgaagtaaaagtgatc 253  Q
    |||||| ||||||||||| || || ||| || ||| ||||||||||||||||||| ||||||||||    
T  46879896 gacaccataaccatcccaaaaactcgaagctggacgctaacttccgatctcgaagcaaaagtgatc 46879831  T

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Target: scaffold0620 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 3896 - 3825
Alignment:
Q  87 ttgagtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcact 158  Q
    ||||||||||||||||||| ||||| ||||||||||| | | ||||  |||||||| || ||||||||||||    
T  3896 ttgagtcaagaaactgactcccgatctcgaatcaaaattgatcggcccaccagactctaaaaacaaatcact 3825  T

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Target: scaffold0572 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 6273 - 6359
Alignment:
Q  90 agtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcactagggcgtccctcaactcc 176  Q
    ||||||||||||||||| ||   |||||||||| || | ||||| |||||||| |||||||||||||||| | |  |||||||||||    
T  6273 agtcaagaaactgactttcgtcctcgaatcaaatgtgatcggctcaccagactctagaaacaaatcactaagtcacccctcaactcc 6359  T

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Target: scaffold0127 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 31319 - 31233
Alignment:
Q  90 agtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatcactagggcgtccctcaactcc 176  Q
    ||||||||||||||||| ||   |||||||||| || | ||||| |||||||| |||||||||||||||| | |  |||||||||||    
T  31319 agtcaagaaactgactttcgtcctcgaatcaaatgtgatcggctcaccagactctagaaacaaatcactaagtcacccctcaactcc 31233  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 24992026 - 24992084
Alignment:
Q  180 ttcggataagacaccttaaccatccc-ataacttgaaactagacactaacttccgatct 237  Q
    |||||| ||||||||||||||||||| |||||||| |||||||| |||||||| |||||    
T  24992026 ttcggagaagacaccttaaccatcccaataacttggaactagacgctaacttctgatct 24992084  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 30127224 - 30127170
Alignment:
Q  188 agacaccttaaccatcccataa-cttgaaactagacactaacttccgatctcgaa 241  Q
    |||||||||||||| |||| || |||||||||||||||||||||| |||||||||    
T  30127224 agacaccttaaccaacccaaaaacttgaaactagacactaacttctgatctcgaa 30127170  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 51065963 - 51066037
Alignment:
Q  190 acaccttaaccatcccataa-cttgaaactagacactaacttccgatctcgaagtaaaagtgatcggcctaccag 263  Q
    |||||||||||||| || || ||||||| |||||||| ||||||||||| |||| ||||||||| |||| |||||    
T  51065963 acaccttaaccatcgcaaaaacttgaaattagacactgacttccgatcttgaagcaaaagtgattggccaaccag 51066037  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 19176569 - 19176501
Alignment:
Q  86 cttgagtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaat 154  Q
    ||||||||||  |||||||| ||||| ||||||||||||| | ||||  |||||||||||||| |||||    
T  19176569 cttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcggcccaccagactttagaaccaaat 19176501  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Original strand, 19295879 - 19295918
Alignment:
Q  86 cttgagtcaagaaactgacttccgatttcgaatcaaaagt 125  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  19295879 cttgagtcaagaaactaacttccgatatcgaatcaaaagt 19295918  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 43012442 - 43012374
Alignment:
Q  86 cttgagtcaagaaactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaat 154  Q
    ||||||||||  |||||||| ||||| ||||||||||||| | |||   |||||||||||||| |||||    
T  43012442 cttgagtcaaagaactgactcccgatctcgaatcaaaagtgatcgggccaccagactttagaaccaaat 43012374  T

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Target: scaffold0200 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 19438 - 19380
Alignment:
Q  98 aactgacttccgatttcgaatcaaaagtcaccggcttaccagactttagaaacaaatca 156  Q
    |||||||||||||| ||||||||||||| | ||||  |||||||||||| | |||||||    
T  19438 aactgacttccgatctcgaatcaaaagtgatcggcccaccagactttaggaccaaatca 19380  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 28765752 - 28765797
Alignment:
Q  218 tagacactaacttccgatctcgaagtaaaagtgatcggcctaccag 263  Q
    |||||| |||||| | ||||| ||||||||||||||||||||||||    
T  28765752 tagacagtaactttcaatctcaaagtaaaagtgatcggcctaccag 28765797  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 42164 - 42212
Alignment:
Q  98 aactgacttccgatttcgaatcaaaagtcaccggcttaccagactttag 146  Q
    |||||||||||||| ||||||||||||| | ||||  ||||||||||||    
T  42164 aactgacttccgatctcgaatcaaaagtgatcggcccaccagactttag 42212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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