View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_107 (Length: 308)
Name: NF8901_low_107
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_107 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 3075370 - 3075068
Alignment:
| Q |
10 |
gcacatgtcaatgatggaaaattagctccacgagccgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttatggtgctctgatc |
109 |
Q |
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| T |
3075370 |
gcacatgtcaatgatggaaaattagctccacgagccgttgagtgcatatttcttgattatgcatctgagtctaaggggtatcgtttgtggtgctctgatc |
3075271 |
T |
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| Q |
110 |
caaaatcacaaaaattaattcttagtagagatgtgacttttaatgaggatgcattattatcttctagaaaacaatcttttgtgtcttcttctactagtac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3075270 |
caaaatcacaaaaattaattcttagtagagatgtgacttttaatgaggatgcattattatcttctagaaaacagtcttttgtgtcttcttctactagtac |
3075171 |
T |
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| Q |
210 |
aggtaatctgcagagtactagcgagaaggtggagtttgtat----------------ttacgttgatgtcccatcttcctctacaaatgaatttaacatt |
293 |
Q |
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| T |
3075170 |
aggtaatctgcagagtactagcgagaaggtggagtttgtattaaaacctgcagctccttacgttgatgtcccatcttcctctacaaatgaatttaacatt |
3075071 |
T |
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| Q |
294 |
gat |
296 |
Q |
| |
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||| |
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| T |
3075070 |
gat |
3075068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 29473166 - 29473405
Alignment:
| Q |
5 |
catatgcacatgtcaatgatggaaaattagctccacgagccgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttatggtgctc |
104 |
Q |
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| T |
29473166 |
catatgcacatgtcaatgatggcaaattagctccaagagctgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttgtggtgctc |
29473265 |
T |
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| Q |
105 |
tgatccaaaatcacaaaaattaattcttagtagagatgtgacttttaatgaggatgcattattatcttctagaaaacaatcttttgtgtcttcttctact |
204 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||| |
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| T |
29473266 |
tgattcaaaatcacaaaaattaattcttagtagagatgtgacttttaatgaggatgtattattatcttctggaaaacagtcttttgtgttttcttctact |
29473365 |
T |
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| Q |
205 |
agtacaggtaatctgcagagtactagcgagaaggtggagtttgtatt |
251 |
Q |
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| T |
29473366 |
agtacaggtaatttg-------ctagcgagaaggtggagtttgtatt |
29473405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 23045862 - 23046112
Alignment:
| Q |
1 |
cctgcatatgcacatgtcaatgatggaaaattagctccacgagccgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttatggt |
100 |
Q |
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| T |
23045862 |
cctgcatatgcacatgtcaatgatggcaaattagctccaagagctgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttgtggt |
23045961 |
T |
|
| Q |
101 |
gctctgatccaaaatcacaaaaattaattcttagtagagatgtgacttttaatgaggatgcattattatcttctagaaaacaatcttttgtgtcttcttc |
200 |
Q |
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| T |
23045962 |
gctctgatccaaaatcacaaaaattaattcttagtagagatgtgacttttaatgaggattcattattatcttctggaaaacagtcttttgtgtcttcttc |
23046061 |
T |
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| Q |
201 |
tactagtacaggtaatctgcagagtactagcgagaaggtggagtttgtatt |
251 |
Q |
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| T |
23046062 |
tactagtacaggtaatctgcaaagtactagcgagaaggtggagtttgtatt |
23046112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 303
Target Start/End: Complemental strand, 15239554 - 15239239
Alignment:
| Q |
4 |
gcatatgcacatgtcaatgatggaaaattagctccacgagccgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttatggtgct |
103 |
Q |
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|||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
15239554 |
gcatatgcacttgtcaatgatggcaaattagctccaagagccgttgagtgcatatttctttcttatgcatctgagtctaaggggtatcgtttgtggtgct |
15239455 |
T |
|
| Q |
104 |
ctgatccaaaatcacaaaaattaattcttagtagagatgtgacttttaatgaggatgcattattatcttctagaaaacaatcttttgtgtcttcttctac |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
15239454 |
ctgatccaaaatcacaaaaattaattcttagtagagatgtgacttttaatgaggatgcattattatcttctggaaaacagtcttttgtgtcttcttctac |
15239355 |
T |
|
| Q |
204 |
tagtacaggtaatctgcagagtactagcgagaaggtggagtttgtat----------------ttacgttgatgtcccatcttcctctacaaatgaattt |
287 |
Q |
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||||| |||||||||||| ||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||| | |
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| T |
15239354 |
tagtataggtaatctgcaaagtactagcaagaacgtggagtttgtattaaagcttgcagctcctaacgttgatgtcccatcttcctctacaaatgaatct |
15239255 |
T |
|
| Q |
288 |
aacattgatgtccatc |
303 |
Q |
| |
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|||||||||| ||||| |
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| T |
15239254 |
aacattgatgaccatc |
15239239 |
T |
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