View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_114 (Length: 294)
Name: NF8901_low_114
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_114 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 21839337 - 21839469
Alignment:
| Q |
96 |
tacatataattcactgagacctccatcaccactctcactttcacactgatatagttaggaactgaaaactaaatttggcatcatacatcaatgtagattt |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21839337 |
tacatataattcactgagacctccatcaccactctcactttcacagtgatttagttaggaactgaaaactaaatttggcatcatacatcaatgttgattt |
21839436 |
T |
|
| Q |
196 |
gtttcagaattgcttgatgcttctgatcctttg |
228 |
Q |
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| T |
21839437 |
gtttcagaattgctagatgcttctgatactttg |
21839469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 21839244 - 21839273
Alignment:
| Q |
1 |
tctgatatgatggcaagcagtcaacagagg |
30 |
Q |
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| T |
21839244 |
tctgatatgatggcaagcagtcaacagagg |
21839273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 39002797 - 39002666
Alignment:
| Q |
96 |
tacatataattcactgagacctccatcaccactctcactttcacactgatatagttaggaactgaaaactaaatttggcatcatacatcaatgtagattt |
195 |
Q |
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|
||||||||||||||| |||| || ||||||| ||||||||||||| |||| ||| |||||||||| ||||||| |||||||||| || |||||| |||| |
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| T |
39002797 |
tacatataattcacttagacatc-atcaccattctcactttcacagtgatttagctaggaactgataactaaagttggcatcatgcagcaatgttaattt |
39002699 |
T |
|
| Q |
196 |
gtttcagaattgcttgatgcttctgatcctttg |
228 |
Q |
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|||| |||||| || ||||||| |||||||||| |
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| T |
39002698 |
gttttagaattactagatgcttttgatcctttg |
39002666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 6721123 - 6721085
Alignment:
| Q |
226 |
ttgccaattttattcaatctttcctattttgaagagtaa |
264 |
Q |
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| T |
6721123 |
ttgccaattttattcaatctttcctattttaaagagtaa |
6721085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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