View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_115 (Length: 288)

Name: NF8901_low_115
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_115
NF8901_low_115
[»] chr7 (16 HSPs)
chr7 (9-249)||(16449165-16449405)
chr7 (9-249)||(16042059-16042299)
chr7 (9-168)||(2155390-2155549)
chr7 (17-168)||(5128809-5128960)
chr7 (9-168)||(11423944-11424103)
chr7 (9-168)||(16502547-16502706)
chr7 (9-168)||(16517583-16517742)
chr7 (9-168)||(10916035-10916194)
chr7 (248-288)||(16041392-16041432)
chr7 (248-288)||(16450032-16450072)
chr7 (248-286)||(31088498-31088536)
chr7 (248-286)||(45733531-45733569)
chr7 (248-288)||(2109039-2109079)
chr7 (248-288)||(2775428-2775468)
chr7 (248-288)||(11424810-11424850)
chr7 (248-288)||(26484763-26484803)
[»] chr5 (20 HSPs)
chr5 (9-249)||(25199773-25200013)
chr5 (9-249)||(22889213-22889453)
chr5 (15-166)||(23893033-23893184)
chr5 (9-168)||(11550179-11550338)
chr5 (9-168)||(22998292-22998451)
chr5 (9-168)||(24687335-24687494)
chr5 (17-168)||(23751636-23751787)
chr5 (9-168)||(30935458-30935617)
chr5 (9-168)||(33778312-33778471)
chr5 (15-168)||(23717172-23717325)
chr5 (9-168)||(24970843-24971002)
chr5 (248-288)||(22888547-22888587)
chr5 (248-288)||(23892283-23892323)
chr5 (248-288)||(25199106-25199146)
chr5 (248-286)||(11325873-11325911)
chr5 (248-286)||(13184693-13184731)
chr5 (248-286)||(13440539-13440577)
chr5 (248-286)||(33877326-33877364)
chr5 (248-288)||(29889127-29889167)
chr5 (18-124)||(37357830-37357936)
[»] chr3 (21 HSPs)
chr3 (9-249)||(18531084-18531324)
chr3 (9-249)||(16625923-16626163)
chr3 (9-168)||(29148077-29148236)
chr3 (9-168)||(22386900-22387059)
chr3 (9-168)||(35881543-35881702)
chr3 (9-168)||(4722408-4722567)
chr3 (9-168)||(6193093-6193252)
chr3 (9-168)||(15892028-15892187)
chr3 (9-139)||(18331434-18331564)
chr3 (9-168)||(4795975-4796134)
chr3 (9-168)||(15740416-15740575)
chr3 (9-168)||(18052039-18052198)
chr3 (9-168)||(8296749-8296908)
chr3 (9-168)||(8300589-8300748)
chr3 (248-288)||(16626695-16626735)
chr3 (248-288)||(18530417-18530457)
chr3 (248-286)||(4625975-4626013)
chr3 (18-124)||(17984287-17984393)
chr3 (248-286)||(17993973-17994011)
chr3 (248-286)||(5652418-5652456)
chr3 (248-288)||(31034306-31034346)
[»] chr1 (6 HSPs)
chr1 (9-249)||(16207312-16207552)
chr1 (26-249)||(20461819-20462042)
chr1 (248-288)||(20461148-20461188)
chr1 (248-288)||(20340483-20340523)
chr1 (248-288)||(16208179-16208219)
chr1 (248-288)||(28151929-28151969)
[»] chr4 (12 HSPs)
chr4 (9-249)||(1901007-1901247)
chr4 (9-249)||(15228619-15228859)
chr4 (9-249)||(15284209-15284449)
chr4 (17-129)||(15390663-15390775)
chr4 (9-168)||(24113493-24113652)
chr4 (9-168)||(14665849-14666008)
chr4 (9-139)||(24591636-24591766)
chr4 (248-288)||(15285076-15285116)
chr4 (248-286)||(24460753-24460791)
chr4 (248-288)||(1900340-1900380)
chr4 (250-286)||(14235675-14235711)
chr4 (248-288)||(15227953-15227993)
[»] chr2 (17 HSPs)
chr2 (9-249)||(21702434-21702674)
chr2 (9-249)||(19455691-19455931)
chr2 (15-168)||(28883026-28883179)
chr2 (9-168)||(12656354-12656513)
chr2 (9-168)||(23127836-23127995)
chr2 (9-148)||(27433714-27433853)
chr2 (17-148)||(20838750-20838881)
chr2 (248-286)||(3784720-3784758)
chr2 (248-286)||(16163665-16163703)
chr2 (248-286)||(19456558-19456596)
chr2 (248-286)||(27118754-27118792)
chr2 (248-286)||(31891465-31891503)
chr2 (248-286)||(34157077-34157115)
chr2 (248-286)||(34303440-34303478)
chr2 (248-288)||(21703301-21703341)
chr2 (18-124)||(21676461-21676567)
chr2 (250-286)||(27393035-27393071)
[»] chr8 (12 HSPs)
chr8 (17-129)||(22080150-22080262)
chr8 (9-249)||(16284184-16284424)
chr8 (9-168)||(2136499-2136658)
chr8 (9-168)||(14558440-14558599)
chr8 (9-168)||(16278370-16278529)
chr8 (9-168)||(18791523-18791682)
chr8 (9-168)||(27608145-27608304)
chr8 (9-168)||(19688914-19689073)
chr8 (248-286)||(9354692-9354730)
chr8 (248-286)||(44563171-44563209)
chr8 (248-286)||(19659146-19659184)
chr8 (248-286)||(33244735-33244773)
[»] chr6 (24 HSPs)
chr6 (9-168)||(16750667-16750826)
chr6 (9-168)||(13298175-13298334)
chr6 (9-168)||(24303842-24304001)
chr6 (9-168)||(26919193-26919352)
chr6 (9-167)||(15423541-15423699)
chr6 (9-168)||(22934104-22934263)
chr6 (9-168)||(23856549-23856708)
chr6 (9-168)||(27019949-27020108)
chr6 (9-166)||(24864532-24864689)
chr6 (15-168)||(26989815-26989968)
chr6 (9-249)||(27289594-27289834)
chr6 (27-145)||(17091688-17091806)
chr6 (27-249)||(20161433-20161655)
chr6 (27-249)||(22171176-22171398)
chr6 (248-286)||(8892401-8892439)
chr6 (248-286)||(8903636-8903674)
chr6 (248-286)||(13522164-13522202)
chr6 (248-286)||(33374347-33374385)
chr6 (248-288)||(20160766-20160806)
chr6 (248-288)||(22172025-22172065)
chr6 (248-284)||(22457025-22457061)
chr6 (248-284)||(22477364-22477400)
chr6 (248-288)||(27290461-27290501)
chr6 (252-286)||(28162724-28162758)
[»] scaffold0124 (2 HSPs)
scaffold0124 (9-168)||(31269-31428)
scaffold0124 (248-288)||(20456-20496)
[»] scaffold0089 (3 HSPs)
scaffold0089 (9-168)||(46266-46425)
scaffold0089 (9-140)||(30601-30732)
scaffold0089 (9-168)||(39350-39509)
[»] scaffold0143 (1 HSPs)
scaffold0143 (9-168)||(28109-28268)
[»] scaffold0415 (1 HSPs)
scaffold0415 (248-286)||(2065-2103)
[»] scaffold0558 (1 HSPs)
scaffold0558 (248-288)||(176-216)
[»] scaffold0260 (1 HSPs)
scaffold0260 (248-288)||(2806-2846)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 16449165 - 16449405
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  16449165 aggagcagagacaagatggatatctttgacggggtttgcagcagctgatctacaatcttgtagtcacttctcttgattaacctcaagatctcatccagat 16449264  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  16449265 tggaatcctctatagactggcttggttggctcgcacctctagtaacaggggaaacgtcagatggagtcactttatcagcgggtgtggtggtaggcataac 16449364  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
    | ||||||||||||||| |||||||||||||||||||||||    
T  16449365 agctttcttttggaataacggtggacggacccttccgcttc 16449405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 16042299 - 16042059
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| || |||| || |||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  16042299 aggagtagtgacaggaaggatatctttgatggggtttgcagcagctgatctacaatcttgtagtcacttctcttgattaacctcaagatctcatccagat 16042200  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| ||||||||||||| || ||||||||||  ||||||||||||||||||| |   ||||  |||| |||  ||||| |||||||||||||||    
T  16042199 tggaatcctctatagactggctttgtaggctcgcatccttagtaacaggggaaacatcggtcagagttgctttgtcaatgggtggggtggtaggcataac 16042100  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
    | ||||||||||||| | ||||||||||||||||| |||||    
T  16042099 agctttcttttggaacaacggtggacggacccttctgcttc 16042059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 2155549 - 2155390
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||| || ||||| || ||||    
T  2155549 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgattaacctcaaaatctcgtccagat 2155450  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||  ||| ||||||||||||||| ||  |||| |||||||||||||    
T  2155449 tagaatcctctatagatcggcctggttggctcgcatccctgttaacgggggaaacatcag 2155390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 5128960 - 5128809
Alignment:
Q  17 agacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcc 116  Q
    |||||| ||||||||||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||||    
T  5128960 agacaaaatggatatcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagattagaatcc 5128861  T
Q  117 tttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||| ||||||||||||||||||  |||| || ||||||||||    
T  5128860 tctatagaccggcctggttggctcgcatctctgttaacgggagaaacatcag 5128809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 11423944 - 11424103
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||  ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  11423944 aggagtagagacagaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 11424043  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  11424044 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 11424103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 16502547 - 16502706
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  16502547 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 16502646  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  16502647 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 16502706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 16517583 - 16517742
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  16517583 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 16517682  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  16517683 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 16517742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 10916035 - 10916194
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |  |||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  10916035 aggagtagagacaaaatggatatcttcgacggagtttgcagtagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 10916134  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  10916135 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 10916194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 16041432 - 16041392
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  16041432 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 16041392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 16450032 - 16450072
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  16450032 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 16450072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 31088498 - 31088536
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  31088498 tcaggtggaggcttgccctgtctggttgtgcagtgccct 31088536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 45733569 - 45733531
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  45733569 tcaggtggaggcttgccctgtctggttgtgcagtgccct 45733531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 2109039 - 2109079
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  2109039 tcaggtggaggcttcccctgtctgattgtgcagtgccctct 2109079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 2775468 - 2775428
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  2775468 tcaggtggaggcttcccctgtctgattgtgcagtgccctct 2775428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 11424810 - 11424850
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||| |||||||| |||||||||||||| ||||||||    
T  11424810 tcaggtgggggcttgccctgtctggttgtgcaatgccctct 11424850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 26484803 - 26484763
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  26484803 tcaggtggaggcttcccctgtctgattgtgcagtgccctct 26484763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 25200013 - 25199773
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    |||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||    
T  25200013 aggagcagagacaaaatggatatctttgacggggtttgcagcagctgatctacaatcttgtagtcacttctcttgattaacctcaaaatctcgtccagat 25199914  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||| |   ||||  |||| |||  ||||| |||||||||  || |    
T  25199913 tggaatcctctatagactggcttggtaggctcgcatccttagtaacaggggaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgtagc 25199814  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | |||||||||||||||||||||||    
T  25199813 tgctttcttttggaacaacggtggacggacccttccgcttc 25199773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 22889453 - 22889213
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    |||||||| |||| || ||||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||| ||| || || ||||||||||    
T  22889453 aggagcagtgacaggacggatatctttgacggggtttgcagcggctgatctacaatcttgtagtcacttctcttgattatcctcaaaatttcatctagat 22889354  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||||||| |   ||||  |||| |||  ||||| |||||||||  || |    
T  22889353 tggaatcctctatagactggctttgttggctcgcacctctagtaacaggagaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgtagc 22889254  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | |||||||||||||||||| ||||    
T  22889253 tgctttcttttggaacaacggtggacggacccttccacttc 22889213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 23893184 - 23893033
Alignment:
Q  15 agagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaat 114  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||||||| | || ||||| || |||||||| |    
T  23893184 agagacaagatggatatcttcgacggagtttgtaacagctgatccacgatcttgtaatcacttcttttgattaacttcaaaatctcgtccagattggact 23893085  T
Q  115 cctttatagactggcttggttggctcgcatctctagtaacaggggaaacatc 166  Q
    | | ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23893084 catctatagactggcttggttggctcgcatctctagtaacaggagaaacatc 23893033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 11550338 - 11550179
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  11550338 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 11550239  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  11550238 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 11550179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 22998292 - 22998451
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  22998292 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 22998391  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  22998392 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 22998451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 24687335 - 24687494
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||||||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  24687335 aggagtagagacaaaatggatatcttcgacggggtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 24687434  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  24687435 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 24687494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 23751636 - 23751787
Alignment:
Q  17 agacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcc 116  Q
    |||||| ||||||||||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||||    
T  23751636 agacaaaatggatatcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagattagaatcc 23751735  T
Q  117 tttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  23751736 tctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 23751787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 30935617 - 30935458
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| || || || ||||| || ||||    
T  30935617 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaatctcaaaatctcgtccagat 30935518  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| ||||||||||||||||||  |||| || ||||||||||    
T  30935517 tagaatcctctatagaccggcctggttggctcgcatctctgttaacgggagaaacatcag 30935458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 33778471 - 33778312
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  33778471 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 33778372  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||| ||| |||||  |||| || ||||||||||    
T  33778371 tagaatcctctatagaccggcctggttggcccgcgtctctgttaacgggagaaacatcag 33778312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 23717172 - 23717325
Alignment:
Q  15 agagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaat 114  Q
    |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||    
T  23717172 agagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagattagaat 23717271  T
Q  115 cctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    ||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  23717272 cctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 23717325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 24971002 - 24970843
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| || ||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  24971002 aggagtagggacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 24970903  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  24970902 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 24970843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 22888587 - 22888547
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  22888587 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 22888547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 23892323 - 23892283
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  23892323 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 23892283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 25199146 - 25199106
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  25199146 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 25199106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 11325911 - 11325873
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  11325911 tcaggtggaggcttgccctgtctggttgtgcagtgccct 11325873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 13184693 - 13184731
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  13184693 tcaggtggaggcttgccctgtctggttgtgcagtgccct 13184731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 13440539 - 13440577
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  13440539 tcaggtggaggcttgccctgtctggttgtgcagtgccct 13440577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 33877364 - 33877326
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  33877364 tcaggtggaggcttgccctgtctggttgtgcagtgccct 33877326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 29889127 - 29889167
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  29889127 tcaggtggaggcttgccctgtctggtggtgcagtgccctct 29889167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 37357830 - 37357936
Alignment:
Q  18 gacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcct 117  Q
    ||||||| |||||||||||| || || || | || |||||| || ||||||||||| || ||||| |||| ||| |  |||||||||| ||| |||||||    
T  37357830 gacaagacggatatctttgaaggagtctgcagcaactgatcaacgatcttgtagtcgctcctctttattatcctcagaatctcatctaaatttgaatcct 37357929  T
Q  118 ttataga 124  Q
     ||||||    
T  37357930 ctataga 37357936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 18531324 - 18531084
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||||||||||||||||||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||| ||| || || ||||||||||    
T  18531324 aggagcagagacaagatggatatctttgatggggtttgcagcagctgatctacaatcttgtagtcacttctcttgattatcctcaacatttcatctagat 18531225  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||| |||||||| |   ||||  |||| |||  ||||| |||||||||  || |    
T  18531224 tggaatcctctatagattggcttggttggctcgcacctctagtaacaggagaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgtagc 18531125  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | |||||||||||||||||||||||    
T  18531124 tgctttcttttggaacaacggtggacggacccttccgcttc 18531084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 16625923 - 16626163
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| || |||| || ||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||| ||||    
T  16625923 aggagtagtgacaggacggatatctttgacggggtttgcagcagctgatctacaatcttgtagtcacttttcttgattatcctcaagatctcatccagat 16626022  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||  |||||||||||||||| ||||| ||||  |||||||||| |||||||| |   ||||  |||| |||  ||||| |||||||||  || |    
T  16626023 tggaatcccctatagactggcttggtcggctcacatccttagtaacaggagaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgtagc 16626122  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | | ||||||| |||||||||||||    
T  16626123 tgctttcttttggaacaacagtggacgaacccttccgcttc 16626163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 29148077 - 29148236
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| || ||||| |||||||    
T  29148077 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttgtaatcacttcttttgatcaacctcaaaatctcgtctagat 29148176  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  29148177 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 29148236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 22386900 - 22387059
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  22386900 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 22386999  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| ||||||||||||||||||  |||| |||||||||||||    
T  22387000 tagaatcctctatagaccggcctggttggctcgcatctctgttaacgggggaaacatcag 22387059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 35881702 - 35881543
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  35881702 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 35881603  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| |||||||||||||||| |||||  |||| || ||||||||||    
T  35881602 tagaatcctctatagaccggcttggttggctcgcgtctctgttaacgggagaaacatcag 35881543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 4722567 - 4722408
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| ||||| || ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||| || ||||| |||||||    
T  4722567 aggagtagagataaaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtctagat 4722468  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  4722467 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 4722408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 6193252 - 6193093
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  6193252 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 6193153  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  6193152 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 6193093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 15892028 - 15892187
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    |||||||||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  15892028 aggagcagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 15892127  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  15892128 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 15892187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 18331564 - 18331434
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||| || ||||| |||||||    
T  18331564 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtctagat 18331465  T
Q  109 tggaatcctttatagactggcttggttggct 139  Q
    | ||||||| ||||||| ||| |||||||||    
T  18331464 tagaatcctctatagaccggcctggttggct 18331434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 4795975 - 4796134
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  4795975 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 4796074  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  4796075 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 4796134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 15740416 - 15740575
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  15740416 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 15740515  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| || ||||||||| |||||  |||| || ||||||||||    
T  15740516 tagaatcctctatagaccggcctgattggctcgcgtctctgttaacgggagaaacatcag 15740575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 18052198 - 18052039
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  18052198 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 18052099  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  18052098 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 18052039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 8296908 - 8296749
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  8296908 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 8296809  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||| | |||||  |||| || ||||||||||    
T  8296808 tagaatcctctatagaccggcctggttggctcacgtctctgttaacgggagaaacatcag 8296749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 8300589 - 8300748
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| ||||| || ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  8300589 aggagtagagataaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 8300688  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  8300689 tagaatcctctatagaccggcctggttggctcgcgtctctgttaactggagaaacatcag 8300748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 16626695 - 16626735
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  16626695 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 16626735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 18530457 - 18530417
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  18530457 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 18530417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 4626013 - 4625975
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  4626013 tcaggtggaggcttgccctgtctggttgtgcagtgccct 4625975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 17984287 - 17984393
Alignment:
Q  18 gacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcct 117  Q
    ||||||| |||||||||||| || || || | || |||||| |||||||||||||| || ||||| |||| ||| |  |||||||||| ||| |||||||    
T  17984287 gacaagacggatatctttgaaggagtctgcagcaactgatcaacaatcttgtagtcgctcctctttattatcctcagaatctcatctaaatttgaatcct 17984386  T
Q  118 ttataga 124  Q
     ||||||    
T  17984387 ctataga 17984393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 17993973 - 17994011
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  17993973 tcaggtggaggcttgccctgtctggttgtgcagtgccct 17994011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 5652456 - 5652418
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  5652456 tcaggtgaaggcttgccctgtctggttgtgcagtgccct 5652418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 31034306 - 31034346
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  31034306 tcaggtggaggcttcccctgtctgattgtgcagtgccctct 31034346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 16207312 - 16207552
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| || ||||| || ||||    
T  16207312 aggagcagagacaagatggatatctttgacggggtttgcagcagctgatctacaatcttgtagtcacttctcttgattaacctcaaaatctcgtccagat 16207411  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |   ||||  |||| |||  ||||| |||||||||   |      
T  16207412 tggaatcctctatagactggcttggttggctcgcatctctagtaacaggagaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgcatt 16207511  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | |||||| ||||||||||||||||    
T  16207512 tgctttcttttggaacaacggtgggcggacccttccgcttc 16207552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 20462042 - 20461819
Alignment:
Q  26 ggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcctttatagac 125  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  20462042 ggatatctttgacggggtttgcaacagctgatctacaatcttgtagtcacttctcttgattatccttaagatctcatccagattggaatcctctatagac 20461943  T
Q  126 tggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataacaactttcttttggaata 225  Q
    ||||||||| ||||| ||||  |||||||||| |||||||  |   ||||  |||| |||  ||||| |||||||||  || |  ||||||| ||||| |    
T  20461942 tggcttggtcggctcacatccttagtaacaggagaaacatttgtcagagttgctttgtcaatgggtggggtggtaggtgtagctgctttcttgtggaaca 20461843  T
Q  226 gcggtggacggacccttccgcttc 249  Q
     ||||||||||||| |||||||||    
T  20461842 acggtggacggacctttccgcttc 20461819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 20461188 - 20461148
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  20461188 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 20461148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 20340483 - 20340523
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  20340483 tcaggtggaggcttgccctgtctggttgtgtagtgccctct 20340523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 16208179 - 16208219
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||| || || |||||||||||||||||||||||    
T  16208179 tcaggtggaggttttccctgtctggttgtgcagtgccctct 16208219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 28151969 - 28151929
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  28151969 tcaggtggaggcttcccctgtctgattgtgcagtgccctct 28151929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 1901247 - 1901007
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| || ||||||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  1901247 aggagtagtgacaagacggatatctttgacggggtttgcagcagctgatctacaatcttgtagtcacttctcttgattatcctcaagatctcatccagat 1901148  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| |||||||||||||||| ||||| ||||  |||||||||| |||||||| |   ||||  |||| |||  ||||| |||||||||  || |    
T  1901147 tggaatcctctatagactggcttggtcggctcacatccttagtaacaggagaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgtatc 1901048  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | |||||||||||||||||||||||    
T  1901047 tgctttcttttggaacaacggtggacggacccttccgcttc 1901007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 15228859 - 15228619
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    |||||||| |||| || ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| ||| || || |||||||  |    
T  15228859 aggagcagtgacaggacggatatctttgacggggtttgcagcagctgatctacaatcttgtagtcacttctcttgattatcctcaaaatttcatctaagt 15228760  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    |||||||||  ||||| ||||||||| ||||| ||||  |||||||||| |||||||| |   ||||  |||| |||  ||||| |||||||||  || |    
T  15228759 tggaatcctcgatagattggcttggtcggctcacatccttagtaacaggagaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgtagc 15228660  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | |||||||||||||||||||||||    
T  15228659 tgctttcttttggaacaacggtggacggacccttccgcttc 15228619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 15284209 - 15284449
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| || |||| || ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| ||||    
T  15284209 aggagtagtgacaggacggatatctttgacggggtttgcagcagctgatctacaatcttgtagtcacttctcttaattatcctcaagatctcatccagat 15284308  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| |||||| ||||||||| ||||| ||||  |||||| ||| |||||||| |   ||||  |||| |||  ||||| |||||||||  || |    
T  15284309 tggaatcctctatagattggcttggtcggctcacatccttagtaataggagaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgtagc 15284408  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | |||||||| ||||||||||||||    
T  15284409 tgctttcttttggaacaacggtggacagacccttccgcttc 15284449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 15390663 - 15390775
Alignment:
Q  17 agacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcc 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||  |||||||||    
T  15390663 agacaagatggatatctttgacggagtttgtaacagctgatccacgatcttgtagtcacttctcttgattaacctcaaaatcttatctaagttggaatcc 15390762  T
Q  117 tttatagactggc 129  Q
    |  ||||||||||    
T  15390763 tcgatagactggc 15390775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 24113652 - 24113493
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||| ||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  24113652 aggagtagagacaaaatggatatcttcgacggagtttgcagcagttgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 24113553  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| |||||||||||||||| |||||  |||| || ||||||||||    
T  24113552 tagaatcctctatagaccggcttggttggctcgcgtctctgttaacgggagaaacatcag 24113493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 14666008 - 14665849
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  14666008 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 14665909  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| ||||||||| || |||||  |||| || ||||||||||    
T  14665908 tagaatcctctatagaccggcctggttggcttgcgtctctgttaacgggagaaacatcag 14665849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 24591636 - 24591766
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  24591636 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 24591735  T
Q  109 tggaatcctttatagactggcttggttggct 139  Q
    | ||||||| ||||||| ||| |||||||||    
T  24591736 tagaatcctctatagaccggcctggttggct 24591766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 15285076 - 15285116
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  15285076 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 15285116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 24460753 - 24460791
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  24460753 tcaggtggaggcttgccctgtctggttgtgcagtgccct 24460791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 1900380 - 1900340
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  1900380 tcaggtggaggcttaccatgtctggttgtgcagtgccctct 1900340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 14235675 - 14235711
Alignment:
Q  250 aggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  14235675 aggtggaggcttgccctgtctggttgtacagtgccct 14235711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 15227993 - 15227953
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||||||||| || ||||||||||| |||||||||||    
T  15227993 tcaggtggaggcttaccctgtctggttgtacagtgccctct 15227953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 21702434 - 21702674
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| || |||| || |||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  21702434 aggagtagtgacaggacggatatctttgatggggtttgcagcagctgatctacaatcttgtagtcacttctcttgattaacctcaagatctcatccagat 21702533  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| |||||||||||||||| | |||||||||||||||||| | |||||||| |   ||||  |||| |||  ||||| |||||||||  || |    
T  21702534 tggaatcctctatagactggcttggtcgactcgcatctctagtaacatgagaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgtagc 21702633  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | ||||||||||||| |||||||||    
T  21702634 tgctttcttttggaacaacggtggacggaccgttccgcttc 21702674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 19455691 - 19455931
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| || |||| || ||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  19455691 aggagtagtgacaggacggatatctttgacggggtttgcagcagctaatctacaatcttgtagtcacttctcttgattatcctcaagatctcatccagat 19455790  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    ||||||||| |||||| ||||||||| ||||| ||||  |||||||||| |||||||| |   ||||  |||| |||  ||||| |||||||||  || |    
T  19455791 tggaatcctctatagattggcttggtcggctcacatccttagtaacaggagaaacatcggtcagagttgctttgtcaatgggtggggtggtaggtgtagc 19455890  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      ||||||||||||| | |||||||||||||||||||||||    
T  19455891 tgctttcttttggaacaacggtggacggacccttccgcttc 19455931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 28883179 - 28883026
Alignment:
Q  15 agagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaat 114  Q
    |||||||| ||||||||||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||    
T  28883179 agagacaaaatggatatcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaacatctcgtccagattagaat 28883080  T
Q  115 cctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    ||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  28883079 cctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 28883026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 12656513 - 12656354
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||||||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || || |    
T  12656513 aggagtagagacaaaatggatatcttcgacggggtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccaggt 12656414  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  12656413 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 12656354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 23127836 - 23127995
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  23127836 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 23127935  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  23127936 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 23127995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 27433714 - 27433853
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||| | ||||| ||||| || ||||| || ||||    
T  27433714 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcactttttttgatcaacctcaaaatctcgtccagat 27433813  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctct 148  Q
    | ||||||| ||||||| ||| |||||||||||| |||||    
T  27433814 tagaatcctctatagaccggcctggttggctcgcgtctct 27433853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 20838881 - 20838750
Alignment:
Q  17 agacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcc 116  Q
    |||||| ||||||||||| ||||||||||| | ||||||||| ||||| ||||| |||||||| ||||| ||||| || ||||| || ||||| ||||||    
T  20838881 agacaaaatggatatcttcgacggggtttgcagcagctgatctacaatgttgtaatcacttcttttgatcaacctcaaaatctcgtccagattagaatcc 20838782  T
Q  117 tttatagactggcttggttggctcgcatctct 148  Q
    | ||||||  ||| |||||| ||||| |||||    
T  20838781 tctatagatcggcctggttgactcgcgtctct 20838750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 3784758 - 3784720
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  3784758 tcaggtggaggcttgccctgtctggttgtgcagtgccct 3784720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 16163703 - 16163665
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  16163703 tcaggtggaggcttgccctgtctggttgtgcagtgccct 16163665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 19456558 - 19456596
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  19456558 tcaggtggaggcttgccctgtctggttgtgcagtgccct 19456596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 27118792 - 27118754
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  27118792 tcaggtggaggcttgccctgtctggttgtgcagtgccct 27118754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 31891465 - 31891503
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  31891465 tcaggtggaggcttgccctgtctggttgtgcagtgccct 31891503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 34157115 - 34157077
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  34157115 tcaggtggaggcttgccctgtctggttgtgcagtgccct 34157077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 34303440 - 34303478
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  34303440 tcaggtggaggcttgccctgtctggttgtgcagtgccct 34303478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 21703301 - 21703341
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  21703301 tcaggtggaggcttgtcctgtctggttgtgcagtgccctct 21703341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 21676461 - 21676567
Alignment:
Q  18 gacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcct 117  Q
    ||||||| ||||||||| || || || || | || |||||| || |||||||||||||| ||||| |||| ||| |  |||||||||| ||| |||||||    
T  21676461 gacaagacggatatcttcgaaggagtctgcagcaactgatcaacgatcttgtagtcactcctctttattatcctcagaatctcatctaaattcgaatcct 21676560  T
Q  118 ttataga 124  Q
     ||||||    
T  21676561 ctataga 21676567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 27393071 - 27393035
Alignment:
Q  250 aggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||| || ||||||||||||||||||    
T  27393071 aggtggaggcttgccctgcctggttgtgcagtgccct 27393035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 22080150 - 22080262
Alignment:
Q  17 agacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcc 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||  |||||||||    
T  22080150 agacaagatggatatctttgacggagtttgtaacagctgatccacgatcttgtagtcacttctcttgattaacctcaaaatctcatctaagttggaatcc 22080249  T
Q  117 tttatagactggc 129  Q
    |  ||||||||||    
T  22080250 tcgatagactggc 22080262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 16284424 - 16284184
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||| ||||||||||||||||| |||||||| ||||| ||||| || ||||| || ||||    
T  16284424 aggagtagagacaaaatggatatcttcgacggagtttgcagcagttgatccacaatcttgtaatcacttcttttgatcaacctcaaaatctcgtccagat 16284325  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    | ||||||| ||||||| ||| |||||||||||| ||||| |||||||  ||||||||||  || ||  |||| |||  |||||   |||||||| || |    
T  16284324 tagaatcctctatagaccggcctggttggctcgcgtctctggtaacagcagaaacatcagtcggggttgctttgtcaatgggtggcatggtaggcgtagc 16284225  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      | |||||||| || | |||||||||||| ||||||||||    
T  16284224 tgccttcttttgaaacaacggtggacggactcttccgcttc 16284184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 2136499 - 2136658
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  2136499 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 2136598  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| ||||||| |||| |||||  |||| || ||||||||||    
T  2136599 tagaatcctctatagaccggcctggttggttcgcgtctctgttaacgggagaaacatcag 2136658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 14558599 - 14558440
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || |||||||| ||||    
T  14558599 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcatccagat 14558500  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| |||||||  || |||||||||||| |||||  |||| || ||||||||||    
T  14558499 tagaatcctctatagaccagcctggttggctcgcgtctctgttaacgggagaaacatcag 14558440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 16278529 - 16278370
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  16278529 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 16278430  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  16278429 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 16278370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 18791682 - 18791523
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  18791682 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 18791583  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  18791582 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 18791523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 27608145 - 27608304
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  27608145 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 27608244  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  27608245 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 27608304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 19689073 - 19688914
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  19689073 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 19688974  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| ||||||||| || |||||  |||| || ||||||||||    
T  19688973 tagaatcctctatagaccggcctggttggcttgcgtctctgttaacgggagaaacatcag 19688914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 9354730 - 9354692
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  9354730 tcaggtggaggcttgccctgtctggttgtgcagtgccct 9354692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 44563209 - 44563171
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  44563209 tcaggtggaggcttgccctgtctggttgtgcagtgccct 44563171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 19659146 - 19659184
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  19659146 tcaggtggaggcttgccctgtctggttgtgcagcgccct 19659184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 33244773 - 33244735
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  33244773 tcaggtggaggcttgccctgtctggttgtgcagcgccct 33244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 16750826 - 16750667
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| || ||||| || ||||    
T  16750826 aggagtagagacaaaatggatatctttgacggagtttgcaacagctgatccacaatcttgtaatcacttcttttgatcaacctcaaaatctcgtccagat 16750727  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  16750726 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 16750667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 13298175 - 13298334
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || |||||||| ||||    
T  13298175 aggagaagagacaaaatggatatcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcatccagat 13298274  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  13298275 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 13298334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 24303842 - 24304001
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    |||||||||||||| ||||||||||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  24303842 aggagcagagacaaaatggatatcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 24303941  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  24303942 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 24304001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 26919352 - 26919193
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| || ||||| || ||||    
T  26919352 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttgtaatcacttcttttgatcaacctcaaaatctcgtccagat 26919253  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||| | | |||||  |||| || ||||||||||    
T  26919252 tagaatcctctatagaccggcctggttggcccacgtctctgttaacgggagaaacatcag 26919193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 15423541 - 15423699
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  15423541 aggagtagagacaaaatggatatcttcgacggagtttgcaacagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 15423640  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatca 167  Q
    | ||||||| ||||||| ||| | |||||||||| |||||  |||| || |||||||||    
T  15423641 tagaatcctctatagaccggccttgttggctcgcgtctctgttaacgggagaaacatca 15423699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 22934104 - 22934263
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  22934104 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 22934203  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  22934204 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 22934263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 23856549 - 23856708
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  23856549 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 23856648  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  23856649 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 23856708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 27020108 - 27019949
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  27020108 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 27020009  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  27020008 tagaatcctctatagaccggcctggttggctcgcgtctctgttaactggagaaacatcag 27019949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 24864689 - 24864532
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  24864689 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 24864590  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatc 166  Q
    | ||||||| ||||||  ||| ||||||||||||||||||  |||| || ||||||||    
T  24864589 tagaatcctctatagatcggcctggttggctcgcatctctgttaacgggagaaacatc 24864532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 26989968 - 26989815
Alignment:
Q  15 agagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaat 114  Q
    |||||||| |||||| |||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||| ||||    
T  26989968 agagacaaaatggatgtcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagattagaat 26989869  T
Q  115 cctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    ||| ||||||| ||| || ||||||||| |||||  |||| || ||||||||||    
T  26989868 cctctatagaccggcctgattggctcgcgtctctgttaacgggagaaacatcag 26989815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 27289594 - 27289834
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  27289594 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 27289693  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataac 208  Q
    | ||||||| ||||||| | | |||||||||||| |||||  |||  || ||||||||||  || ||    || |||| ||||||   |||||||||| |    
T  27289694 tagaatcctctatagaccgacctggttggctcgcgtctctgttaatgggagaaacatcagtcggggttggcttgtcagtgggtgtcacggtaggcatagc 27289793  T
Q  209 aactttcttttggaatagcggtggacggacccttccgcttc 249  Q
      | |||||||| || | |||||||||||| ||||||||||    
T  27289794 tgccttcttttgaaacaacggtggacggactcttccgcttc 27289834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 17091688 - 17091806
Alignment:
Q  27 gatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcctttatagact 126  Q
    |||||||||||||||||||| | || ||||||||||||||||||||| ||||| |||||||  ||||||||||| || ||  |||| |||| ||| ||||    
T  17091688 gatatctttgacggggtttgcagcaactgatccacaatcttgtagtcgcttcttttgattattcttaagatctcgtccaggctggagtcctctatggact 17091787  T
Q  127 ggcttggttggctcgcatc 145  Q
    | |||||||| ||| ||||    
T  17091788 gacttggttgactcacatc 17091806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 20161655 - 20161433
Alignment:
Q  27 gatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcctttatagact 126  Q
    |||||||||||||| || || |  || ||||| ||||||||||||||||||||  |||||| ||||||||| ||||  | ||||||||| | ||| ||||    
T  20161655 gatatctttgacggagtctgcagtagttgatctacaatcttgtagtcacttcttctgattatccttaagatttcattcaaattggaatcatctatggact 20161556  T
Q  127 ggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataacaactttcttttggaatag 226  Q
    ||| |||| | ||| |||| |  |||||  | || ||||| ||| || |  |||| |||  ||||| |||||||||  ||||  ||||||| || |||||    
T  20161555 ggcctggtcgactcacatccccggtaactagagagacatcgggtagaattgctttgtcaatgggtggggtggtaggtgtaactgctttcttctgaaatag 20161456  T
Q  227 cggtggacggacccttccgcttc 249  Q
    ||||||||| ||| |||| ||||    
T  20161455 cggtggacgaaccgttccacttc 20161433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 22171176 - 22171398
Alignment:
Q  27 gatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagattggaatcctttatagact 126  Q
    |||||||||||||| || || |  || ||||| ||||||||||||||||||||  |||||| ||||||||| ||||  | ||||||||| | ||| ||||    
T  22171176 gatatctttgacggagtctgcagtagttgatctacaatcttgtagtcacttcttctgattatccttaagatttcattcaaattggaatcatctatggact 22171275  T
Q  127 ggcttggttggctcgcatctctagtaacaggggaaacatcaggtggagtcactttatcagcgggtgtggtggtaggcataacaactttcttttggaatag 226  Q
    ||| |||| | ||| |||| |  |||||  | || ||||| ||| || |  |||| |||  ||||| |||||||||  ||||  ||||||| || |||||    
T  22171276 ggcctggtcgactcacatccccggtaactagagagacatcgggtagaattgctttgtcaatgggtggggtggtaggtgtaactgctttcttctgaaatag 22171375  T
Q  227 cggtggacggacccttccgcttc 249  Q
    ||||||||| ||| |||| ||||    
T  22171376 cggtggacgaaccgttccacttc 22171398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 8892401 - 8892439
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  8892401 tcaggtggaggcttgccctgtctggttgtgcagtgccct 8892439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 8903636 - 8903674
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  8903636 tcaggtggaggcttgccctgtctggttgtgcagtgccct 8903674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 13522164 - 13522202
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  13522164 tcaggtggaggcttgccctgtctggttgtgcagtgccct 13522202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 33374347 - 33374385
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  33374347 tcaggtggaggcttgccctgtctggttgtgcagtgccct 33374385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 20160806 - 20160766
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  20160806 tcaggtggaggcttgccttgcctggttgtgcaatgccctct 20160766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 22172025 - 22172065
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  22172025 tcaggtggaggcttgccttgcctggttgtgcaatgccctct 22172065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 22457025 - 22457061
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgcc 284  Q
    ||||||||||||||||| |||||||||||||||||||    
T  22457025 tcaggtggaggcttgccctgtctggttgtgcagtgcc 22457061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 22477364 - 22477400
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgcc 284  Q
    ||||||||||||||||| |||||||||||||||||||    
T  22477364 tcaggtggaggcttgccctgtctggttgtgcagtgcc 22477400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 27290461 - 27290501
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  27290461 tcaggtggaggcttgccctgtctggttgtgtagtgccctct 27290501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 28162758 - 28162724
Alignment:
Q  252 gtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||| |||||||||||||||||||||    
T  28162758 gtggaggcttgccctgtctggttgtgcagtgccct 28162724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 31428 - 31269
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | |||||||||||||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  31428 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatccacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 31329  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| |||||||||||||||| |||||  |||| || ||||||||||    
T  31328 tagaatcctctatagaccggcttggttggctcgcgtctctgttaacgggagaaacatcag 31269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 20496 - 20456
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  20496 tcaggtggaggcttgccctgtctggttgtgcagtgccctct 20456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 46266 - 46425
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || |||||||| ||||    
T  46266 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcatccagat 46365  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  46366 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 46425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 30732 - 30601
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||||||||| | |||||||||||||||||| || |||||||| ||||| || || || ||||| || ||||    
T  30732 aggagtagagacaaaatggatatcttcgacggggtttgcagcagctgatccacaatcttataatcacttcttttgatcaatctcaaaatctcgtccagat 30633  T
Q  109 tggaatcctttatagactggcttggttggctc 140  Q
    | ||||||| ||||||| ||| ||||||||||    
T  30632 tagaatcctctatagaccggcctggttggctc 30601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 39350 - 39509
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  39350 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 39449  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||  ||| |||||| ||||| |||||  |||| || ||||||||||    
T  39450 tagaatcctctatagatcggcctggttgactcgcgtctctgttaacgggagaaacatcag 39509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 28268 - 28109
Alignment:
Q  9 aggagcagagacaagatggatatctttgacggggtttgtaacagctgatccacaatcttgtagtcacttctcttgattaaccttaagatctcatctagat 108  Q
    ||||| |||||||| ||||||||||| ||||| ||||| | ||||||||| |||||||| || |||||||| ||||| ||||| || ||||| || ||||    
T  28268 aggagtagagacaaaatggatatcttcgacggagtttgcagcagctgatctacaatcttataatcacttcttttgatcaacctcaaaatctcgtccagat 28169  T
Q  109 tggaatcctttatagactggcttggttggctcgcatctctagtaacaggggaaacatcag 168  Q
    | ||||||| ||||||| ||| |||||||||||| |||||  |||| || ||||||||||    
T  28168 tagaatcctctatagaccggcctggttggctcgcgtctctgttaacgggagaaacatcag 28109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0415 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 2065 - 2103
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccct 286  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  2065 tcaggtggaggcttgccctgtctggttgtgcagtgccct 2103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0558
Description:

Target: scaffold0558; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 176 - 216
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  176 tcaggtggaggcttgccatgtctggttgagcagtgccctct 216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 2806 - 2846
Alignment:
Q  248 tcaggtggaggcttgccttgtctggttgtgcagtgccctct 288  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  2806 tcaggtggaggcttgccctgtctggttgtgtagtgccctct 2846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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