View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_12 (Length: 756)
Name: NF8901_low_12
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 20 - 727
Target Start/End: Complemental strand, 349958 - 349250
Alignment:
| Q |
20 |
agaagtaccatgatgacatccccctgttggatgccaagtttgttgagaccggaggcgactttttgcgcggtgagttcgacatcatagtaggtgtaaattt |
119 |
Q |
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| T |
349958 |
agaagaaccatgatgacatccccctgttggatgccaagtttgttgagaccggaggcgactttttgcgcggtgagttggacatcatagtaggtgtaaattt |
349859 |
T |
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| Q |
120 |
caccagttggtgcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagcaatatgaatgaagaggaaggtgtttgggaatgtaaatatc |
219 |
Q |
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| T |
349858 |
cagcagttggagcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagcaatatgaatgaagaggaaggtgtttgggaatgtaaatatc |
349759 |
T |
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| Q |
220 |
aggaagcttagacttgaaaatgaactcttgttccattgtttggatagtcattagaatgttattgtttgcttaaagagaatgaatattgttgttgatttca |
319 |
Q |
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| T |
349758 |
aggaagcttagacttgaaaatcaactcttgttccattgtttggatagtcattagaatgttattgtttgcttaaagagaatgaatattgttgatgatttca |
349659 |
T |
|
| Q |
320 |
atttttctcttgagaaagaacaagaactacactttgtgtaatataggacttgttatggctaaggtgatgtgaatgt----agccagccacatggaaattg |
415 |
Q |
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| T |
349658 |
attattctcttgagaaagaacaagaacttcac-ttgtgtaatataggacttgttatggctaaggtgatgtgaatgtagccagccagccacatggaaattg |
349560 |
T |
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| Q |
416 |
gttaaaaggtggtcgtggttggtgaagggacaaaatggacaattcaaaaaatatagttggtgatggtgggtaaggataggagttggtgagagtgatttgt |
515 |
Q |
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| T |
349559 |
gttaaaaggtggtcgtggttggtgaagggacaaaatggacaattcaataaatatagt------tggtgggtaaggaaaggagttggtgagagtgatttgt |
349466 |
T |
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| Q |
516 |
gtttaaattttattaattctctactataattagaagtgattggatcaaaatcaaac-aagtttggtaaataaattacattttactttataagttgattaa |
614 |
Q |
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| T |
349465 |
gtttaaattttattaattctctactataattacaagtggttggatcaaaatcaaactaagtttggtaaataaattacattttactttataagttgattaa |
349366 |
T |
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| Q |
615 |
ttaaaaaatcaatgccaaaaattgtcaattaaaa---ttaannnnnnnnnaaatctttatggcattcagtggggtaaaatcaaaggaaaaatactttttc |
711 |
Q |
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| T |
349365 |
ttaaaaaatcaatgccaaaaattgtcaattaaaattctttttttttttttaaatctttatggcattcagtggggtaaaatcaaaggaaaaatactttttc |
349266 |
T |
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| Q |
712 |
ttttattattggtgac |
727 |
Q |
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| T |
349265 |
ttttattattggtgac |
349250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 45521120 - 45521059
Alignment:
| Q |
131 |
gcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagcaatatgaatgaag |
192 |
Q |
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| T |
45521120 |
gcattgatgagacatggacgtgaaccgaattgggagagattttcaaaacaatatgaatgaag |
45521059 |
T |
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