View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_121 (Length: 282)
Name: NF8901_low_121
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_121 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 40783779 - 40783524
Alignment:
| Q |
17 |
attgtattgaagctttgtttatgcaaaaaactgcaccaaatgaacaagcactttttgctagaattgttttacataaggtggatactattgatatgatttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40783779 |
attgtattgaagctttgtttatgcaaaaaactgcaccaaatgaacaagcacttttcgctagaattgttttacataaggtggatactattgatatgattct |
40783680 |
T |
|
| Q |
117 |
gagagggcattctaaagccaaattttttatcaatggaaaacatatatgggctcgtaagtttgttccgaaaagagtaaacattagcaaagcaatgtttctt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| | |
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| T |
40783679 |
gagagggcattctaaagccaaattttttatcaatggaaaacatatatgggcccgtaagtttgttccaaaaagagtaaacattagcaaaacaatgtttcct |
40783580 |
T |
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| Q |
217 |
ggagagacttctggttttggttctggatttgggatgtagaggaaattatatgatgt |
272 |
Q |
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| T |
40783579 |
ggagagacttctggttttggttctggatttgggatgtagaggaaattatatgatgt |
40783524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 51977250 - 51977429
Alignment:
| Q |
17 |
attgtattgaagctttgtttatgcaaaaaactgcaccaaatgaacaagcactttttgctagaattgttttacataaggtggatactattgatatgatttt |
116 |
Q |
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|||| ||||| ||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||| |||| || |||||||||||||||| | |
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| T |
51977250 |
attgcattgaggctttgtttatgcaagaaacttcatcaaatgaacaatcactttttgctagaattgttttttataatgttagtactattgatatgattct |
51977349 |
T |
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| Q |
117 |
gagagggcattctaaagccaaattttttatcaatggaaaacatatatgggctcgtaagtttgttccgaaaagagtaaaca |
196 |
Q |
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| T |
51977350 |
gagaggggcttccaaagtcaaattttcaatcaatgggaaacatgtgtgggctcgaaagtttgttccgaaaggagcaaaca |
51977429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 51972829 - 51973008
Alignment:
| Q |
17 |
attgtattgaagctttgtttatgcaaaaaactgcaccaaatgaacaagcactttttgctagaattgttttacataaggtggatactattgatatgatttt |
116 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| | ||||||| ||| ||||||| |||||||||||||| ||||||||| ||||||||| |||||| | |
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| T |
51972829 |
attgtattgagactttgtttatgcaagaaactcaagcaaatgagcaaccacttttcgctagaattgtttttcataaggtgagtactattgacatgattct |
51972928 |
T |
|
| Q |
117 |
gagagggcattctaaagccaaattttttatcaatggaaaacatatatgggctcgtaagtttgttccgaaaagagtaaaca |
196 |
Q |
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| T |
51972929 |
gagaggggcttctaaagtcaaattttccatcaatgggaaacatgtgtgggtgagaaagtttgttccgaaaagagcaaaca |
51973008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 17711391 - 17711219
Alignment:
| Q |
17 |
attgtattgaagctttgtttatgcaaaaaactgcaccaaatgaacaagcactttttgctagaattgttttacataaggtggatactattgatatgatttt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||||||| ||| | ||||| || ||||||||||| |||| ||| ||||||||| |||||| | |
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| T |
17711391 |
attgtattgaggctttgtttatgcaagaaactcaaccaaatgagcaaccgcttttcgccagaattgtttttcatatggtaagtactattgacatgattct |
17711292 |
T |
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| Q |
117 |
gagagggcattctaaagccaaattttttatcaatggaaaacatatatgggctcgtaagtttgttccgaaaaga |
189 |
Q |
| |
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||||||| |||||||| |||||||| |||||| | |||||| | |||| | |||||||||||||||||| |
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| T |
17711291 |
gagaggggcttctaaagtcaaattttcaatcaataggaaacatgtgtgggtcagaaagtttgttccgaaaaga |
17711219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 17726272 - 17726053
Alignment:
| Q |
17 |
attgtattgaagctttgtttatgcaaaaaactgcaccaaatgaacaagcactttttgctagaattgttttacataaggtggatactattgatatgatttt |
116 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||| ||| ||||||| | |||||| |||| ||||||||| |||||||||||||||| | |
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| T |
17726272 |
attgtattgagactttgtttatgcaagaaactcaaccaaatgagcaaccacttttcggaagaattatttttcataaggtgagtactattgatatgattct |
17726173 |
T |
|
| Q |
117 |
gagagggcattctaaagccaaattttttatcaatggaaaacatatatgggctcgtaagtttgttccgaaaagagtaaacattagcaaagcaatgtttctt |
216 |
Q |
| |
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|| ||| |||||||| |||||||| |||||| | |||||| | |||| | |||||||||||||||||| ||||| ||||| || ||| | |
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| T |
17726172 |
gaaaggagcttctaaagtcaaattttcaatcaataggaaacatgtgtgggtcagaaagtttgttccgaaaagaacaaacaccgacaaagttatacttcct |
17726073 |
T |
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| Q |
217 |
ggagagacttctggttttgg |
236 |
Q |
| |
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|||||||||||||||||||| |
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| T |
17726072 |
ggagagacttctggttttgg |
17726053 |
T |
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