View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_122 (Length: 281)
Name: NF8901_low_122
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_122 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 271
Target Start/End: Complemental strand, 48398467 - 48398225
Alignment:
| Q |
29 |
ccatggttttggagtacatggttgatatacacagttcttgcatattataaaagcaaaaggctaacatcgaaccttacaaaggnnnnnnnttaaaccttaa |
128 |
Q |
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| T |
48398467 |
ccatggttttggagtacatggttgatatacacagttcttgcatattataaaagcaaaaagctaacatcgaaccctacaaaggaaaaaaactaaaccttaa |
48398368 |
T |
|
| Q |
129 |
aataactcgaagaacacaatcgactgcccttaaatgaaactcagcattcttctacatgatacctaatgggtaggaaaacagacaagttaggctttccgaa |
228 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48398367 |
aataactcgaagaacccaatcgactgcccttaaatgaaactcagcattcttctacatgatacctaatgggtgggaaaacagacaagttaggctttccgaa |
48398268 |
T |
|
| Q |
229 |
atacaacacgcctttctcgcttgtactctacttcgtctctctg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48398267 |
atacaacacgcctttctcgcttgtactctacttcgtctctctg |
48398225 |
T |
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