View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_125 (Length: 280)
Name: NF8901_low_125
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_125 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 4331107 - 4330862
Alignment:
| Q |
18 |
ggtgctattattttgtatagtagagttttattgcaacatctatgataacttctattaggtgacaaacaaacaatattgctccctcttcnnnnnnnnnnnn |
117 |
Q |
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| T |
4331107 |
ggtgctattattctgtatagtagagttttattgcaacatctatgataacttctattaggtgacaaacaaacaatattgctccctct-ccaaaaaacaaaa |
4331009 |
T |
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| Q |
118 |
nnnnnnctatcgctcatttatgaataattgtgtacgtgatacatgttaatcaccaatatgtattgaatcaatcactctctctgtcttagattatatgtca |
217 |
Q |
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| T |
4331008 |
aaaaaactatcgctcatttatgaataattgtgtacgtgatacatgttaatcaccaatatgtattgaatcaatcactctctatgtcttagattatatgtca |
4330909 |
T |
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| Q |
218 |
ttatagcaaatgcacattattaagaaatctaattaaagtgtcaagtt |
264 |
Q |
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| T |
4330908 |
ttatagcaaatgcacattattaagaaatctaaataaagtgtcaagtt |
4330862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 35893350 - 35893296
Alignment:
| Q |
211 |
tatgtcattatagcaaatgcacatt-attaagaaatctaattaaagtgtcaagtt |
264 |
Q |
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| T |
35893350 |
tatgtcattctaacaaatgcacatggattaaaaaatctaattaaagtgtcaagtt |
35893296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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