View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_127 (Length: 276)
Name: NF8901_low_127
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_127 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 5414069 - 5414318
Alignment:
| Q |
18 |
ctcctcaacatggtgttgttggggttggagctcagactcgtgcacctgagatggttcagatctatcagtactacggtctctgcccctacccctgcccact |
117 |
Q |
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| T |
5414069 |
ctcctcaacatggtgttgttggggttggagctcatactcgtgcacctgagatggttcagatctatcagtactacggtctctgcccctacccctgcccact |
5414168 |
T |
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| Q |
118 |
ctcccttctgctacaaccttctgcatccgctatcacttaatggatgcagtcatgactggttatgtagtttctaatgcggtatatgatgtccatacctaaa |
217 |
Q |
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| T |
5414169 |
ctcccttctgctacaaccttctgcatccgctatcacttaatggatgcagtcatgactggttatgtagtttctaatgcggtatatgatgtctatacctaaa |
5414268 |
T |
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| Q |
218 |
acatgcaaaatcacatatacatagtttctgatgcggtatatgatgtccat |
267 |
Q |
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| T |
5414269 |
acatgcaaaatcacatatacatagtttctgatgcggtatatgatgtccat |
5414318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 5414290 - 5414347
Alignment:
| Q |
182 |
tagtttctaatgcggtatatgatgtccatacctaaaacatgcaaaatcacatatacat |
239 |
Q |
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| T |
5414290 |
tagtttctgatgcggtatatgatgtccatgcctaaaacatgcaaaatcacatacacat |
5414347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 40570215 - 40570143
Alignment:
| Q |
20 |
cctcaacatggtgttgttggggttggagctcagactcgtgcacctgagatggttcagatctatcagtactacg |
92 |
Q |
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| T |
40570215 |
cctcaacacggtgttgttggggctcgggttcagtctcgtgcactagagatggtccagatccatcggtactacg |
40570143 |
T |
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