View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_13 (Length: 756)

Name: NF8901_low_13
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_13
NF8901_low_13
[»] chr1 (9 HSPs)
chr1 (509-756)||(32502561-32502804)
chr1 (13-419)||(32502894-32503293)
chr1 (232-355)||(32022616-32022741)
chr1 (177-328)||(48611676-48611829)
chr1 (179-353)||(19940548-19940723)
chr1 (232-325)||(34663092-34663185)
chr1 (235-304)||(45485044-45485113)
chr1 (235-310)||(4941199-4941274)
chr1 (184-311)||(1408615-1408741)
[»] chr2 (6 HSPs)
chr2 (230-354)||(9521064-9521182)
chr2 (202-349)||(27322708-27322854)
chr2 (232-312)||(9116405-9116485)
chr2 (232-305)||(16634421-16634494)
chr2 (230-299)||(3037421-3037490)
chr2 (180-218)||(19679448-19679486)
[»] chr3 (8 HSPs)
chr3 (204-355)||(8936054-8936205)
chr3 (232-312)||(43178597-43178677)
chr3 (353-419)||(4395315-4395381)
chr3 (232-328)||(42388719-42388815)
chr3 (185-328)||(36563038-36563180)
chr3 (232-312)||(1294908-1294988)
chr3 (185-328)||(36545134-36545276)
chr3 (112-178)||(4395256-4395323)
[»] chr8 (7 HSPs)
chr8 (178-354)||(9799198-9799375)
chr8 (232-349)||(40995823-40995942)
chr8 (230-299)||(7222846-7222913)
chr8 (179-312)||(30478408-30478540)
chr8 (235-302)||(45397512-45397578)
chr8 (231-312)||(12000142-12000223)
chr8 (309-354)||(35467786-35467831)
[»] scaffold0272 (1 HSPs)
scaffold0272 (179-349)||(6063-6235)
[»] chr4 (9 HSPs)
chr4 (178-355)||(19328775-19328950)
chr4 (353-419)||(18049945-18050011)
chr4 (230-327)||(27756450-27756547)
chr4 (235-312)||(3913647-3913724)
chr4 (235-355)||(38509880-38510000)
chr4 (112-178)||(18050003-18050070)
chr4 (231-293)||(4687363-4687425)
chr4 (235-312)||(3427861-3427938)
chr4 (235-293)||(25474657-25474715)
[»] chr7 (3 HSPs)
chr7 (232-328)||(30486952-30487048)
chr7 (185-312)||(37720509-37720635)
chr7 (230-325)||(28710390-28710485)
[»] chr5 (10 HSPs)
chr5 (202-349)||(28988361-28988512)
chr5 (184-348)||(21067574-21067739)
chr5 (206-355)||(24233126-24233277)
chr5 (232-301)||(39753318-39753387)
chr5 (230-303)||(19187144-19187217)
chr5 (175-304)||(36603640-36603769)
chr5 (202-322)||(14122887-14123006)
chr5 (230-302)||(1179953-1180025)
chr5 (235-299)||(38282505-38282569)
chr5 (230-311)||(39031661-39031741)
[»] scaffold0316 (1 HSPs)
scaffold0316 (177-312)||(1280-1415)
[»] chr6 (1 HSPs)
chr6 (230-304)||(17170671-17170745)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 509 - 756
Target Start/End: Complemental strand, 32502804 - 32502561
Alignment:
Q  509 ctttggttaaatacattgacagtatgtgacatatatacaatatggttgaaaatgcagattttctctgatgtttacattatataatgctaataatgtagaa 608  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32502804 ctttggttaaatacattgacagtatgtgacatatataca---tggttgaaaatgcagattttctctgatgtttacattatataatgctaataatgtagaa 32502708  T
Q  609 ttgaacaaaatatttgacttgccgagaggatttgatacattgacacaatgcatattccttgaaagttggagacagggaagaatatgtaactttctcatgt 708  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32502707 ttcaacaaa-tatttgacttgccgagaggatttgatacattgacacaatgcatattccttgaaagttggagacaaggaagaatatgtaactttctcatgt 32502609  T
Q  709 atgtataggtaacaacaatgcagttacatgtatgtttaaaatcttata 756  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  32502608 atgtataggtaacaacaatgaagttacatgtatgtttaaaatcttata 32502561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 32503293 - 32502894
Alignment:
Q  13 cagagaataatggtcgtacaaaatagagaaaatgaattacaaagtgatataccaaatgcatnnnnnnnntcttatcttagcccgcgcttatgattcaagg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        | |||||||||||||| ||||||||||||||    
T  32503293 cagagaataatggtcgtacaaaatagagaaaatgaattacaaagtgatataccaaatgcataaaaaaa-tattatcttagcccgcccttatgattcaagg 32503195  T
Q  113 gtgttgttgtttcatttagaacaaatctcaagagctggatatagtctacacgtatatttcgcaaatgggtgatgttaaccggtgccctaggggcactggt 212  Q
    || |||||||||||||||||||||||||||||||||  |||  ||||||||||||||||| |||||| ||||||||||| |||||||  | | ||||| |    
T  32503194 gtattgttgtttcatttagaacaaatctcaagagctatatacggtctacacgtatatttcccaaatgagtgatgttaactggtgccc-cgagacactgat 32503096  T
Q  213 taaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 312  Q
    |||| |||||       |||| ||||||||||||||||| |||||||||| |||| |||| ||||||||||||||| |||||   |||||||||||||||    
T  32503095 taagaaaactaaaaaaagaaaattttaaaataaaagtaatactttttatattttttaaaaattgacagcacaaattccaatg---tacttaccacatttg 32502999  T
Q  313 gctctttaaccagtgctcggggcactggttaacattatcctttgcaaatttgagtaacaccccatcaaaatgatgatttgtgaattgtacaatagatgta 412  Q
     ||| ||||| | ||| |   ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32502998 actccttaactaatgccc--cgcattggttaacattatccttcgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaatagatgta 32502901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 232 - 355
Target Start/End: Original strand, 32022616 - 32022741
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg--ct 329  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||  |     
T  32022616 aagttttaaaataaaagtaatactttttatacttttaaaaagttgacagtacaattttcaatgtaatacttaccacatttgactccttaaccagtgcccc 32022715  T
Q  330 cggggcactggttaacattatccttt 355  Q
    ||| ||||||||||||||||||||||    
T  32022716 cggagcactggttaacattatccttt 32022741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 177 - 328
Target Start/End: Original strand, 48611676 - 48611829
Alignment:
Q  177 atgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttg 276  Q
    |||||| ||||||||||||| |   |||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||| |||||||     
T  48611676 atgggtcatgttaaccggtgtctacggggcactggttaaggaaactaaaaaaagatagttttaaaataaaagtaacactttttatacttttgaaaagtta 48611775  T
Q  277 acagcacaaatttcaatgtaatact--taccacatttggctctttaaccagtgc 328  Q
    ||| ||||| || ||||||| ||||  ||| ||||||| |||||||| ||||||    
T  48611776 acaacacaagttgcaatgtagtacttatactacatttgactctttaatcagtgc 48611829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 179 - 353
Target Start/End: Original strand, 19940548 - 19940723
Alignment:
Q  179 gggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgac 278  Q
    |||| ||||||||||||||||  |||||||||||||||||||||       |||||||||||| | ||| ||||||||||||| ||||| |  |||||||    
T  19940548 gggtcatgttaaccggtgcccccggggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgac 19940646  T
Q  279 agcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctc--ggggcactggttaacattatcct 353  Q
    |||| || |||||||| ||||||||| |||||||  || ||||||||||| |  ||||||| |||||||||| ||||    
T  19940647 agcataagtttcaatgcaatacttactacatttgattccttaaccagtgccccgggggcaccggttaacattttcct 19940723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 34663185 - 34663092
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccag 325  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||| |||| || ||||  ||||||||||||||||| ||| ||||||||    
T  34663185 aagttttaaaatgaaagtaacactttttatacttttgaaaagttgacagtacaagttccaatacaatacttaccacatttgactccttaaccag 34663092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 45485044 - 45485113
Alignment:
Q  235 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttac 304  Q
    ||||||||||||| |||||| |||||| ||||| | ||||||||| |||||||||||||| |||||||||    
T  45485044 ttttaaaataaaaataacacattttatgctttttagaagttgacaacacaaatttcaatgcaatacttac 45485113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 4941199 - 4941274
Alignment:
Q  235 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatt 310  Q
    ||||||||||||| ||||||||||||| ||||| |  |||||||| ||||| |||||||| |||| |||| |||||    
T  4941199 ttttaaaataaaaataacactttttatgcttttgaggagttgacaacacaagtttcaatgcaataattactacatt 4941274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 311
Target Start/End: Complemental strand, 1408741 - 1408615
Alignment:
Q  184 atgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcac 283  Q
    |||||||||  |||||| || ||| ||||||||||||||       |||||||||||||| ||| ||| |||||||||  |||| || |||||||| |||    
T  1408741 atgttaaccaatgccct-ggtgcattggttaaggaaactaaaaaaagaaagttttaaaatgaaaataaaactttttatgtttttgaagagttgacaacac 1408643  T
Q  284 aaatttcaatgtaatacttaccacattt 311  Q
    || || |||||||| | |||| ||||||    
T  1408642 aagttccaatgtaaaaattactacattt 1408615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 230 - 354
Target Start/End: Original strand, 9521064 - 9521182
Alignment:
Q  230 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgct 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||         
T  9521064 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaagtttcaatgtaatacttatcacatttgactccttaacca----- 9521158  T
Q  330 cggggcactggttaacattatcctt 354  Q
     ||||||||||||||||||||||||    
T  9521159 -ggggcactggttaacattatcctt 9521182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 202 - 349
Target Start/End: Complemental strand, 27322854 - 27322708
Alignment:
Q  202 ggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatact 301  Q
    |||||||||||||||||||||       | |||||  ||||||||||||| ||||||||| |||||||| |||||||||||||| || ||||| ||||||    
T  27322854 ggggcactggttaaggaaactaaaaaaaggaagttcgaaaataaaagtaatactttttatgcttttcaagagttgacagcacaagttccaatgcaatact 27322755  T
Q  302 taccacatttggctctttaaccagtgctcggggcactggttaacatta 349  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  27322754 taccacatttgactccttaaccagtgc-cggggcactggttaacatta 27322708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 9116405 - 9116485
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 312  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||| ||||||||||||    
T  9116405 aagttttaaaataaaagtaacactttgtatacttttcaaaagttgacagcacaagttccaatgcaatatttaccacatttg 9116485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 16634494 - 16634421
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttacc 305  Q
    ||||||||||||| ||| |||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  16634494 aagttttaaaatagaagcaacattttttatgcttttgaaaagttgacagcacaaattccaatgtaatacttacc 16634421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 3037490 - 3037421
Alignment:
Q  230 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaata 299  Q
    |||| ||||||||| ||||||||||||||||||||||| |  |||||||| |||||||| ||||||||||    
T  3037490 gaaaattttaaaatcaaagtaacactttttatacttttaaggagttgacaacacaaattccaatgtaata 3037421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 19679486 - 19679448
Alignment:
Q  180 ggtgatgttaaccggtgccctaggggcactggttaagga 218  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  19679486 ggtgttgttaaccggtgcccttggggcactggttaagga 19679448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 204 - 355
Target Start/End: Original strand, 8936054 - 8936205
Alignment:
Q  204 ggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactta 303  Q
    |||||||||||||||||||       | |||||||||||||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||     
T  8936054 ggcactggttaaggaaacttaaaaaaggaagttttaaaataaaagtaacactttttatgcttttcaagggttgacagcacaagtttcaatgtaatacttg 8936153  T
Q  304 ccacatttggctctttaaccagtgctcggggcactggttaacattatccttt 355  Q
    ||||||||  ||| ||||||||||| || ||||||||||||||||| |||||    
T  8936154 ccacatttaactccttaaccagtgcccgaggcactggttaacattacccttt 8936205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 43178677 - 43178597
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 312  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||  |||||||    
T  43178677 aagttttaaaataaaagtaacattttttatacttttcaaaagttgacagtacaaatttcaatgtaatatttattacatttg 43178597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 353 - 419
Target Start/End: Original strand, 4395315 - 4395381
Alignment:
Q  353 tttgcaaatttgagtaacaccccatcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 419  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  4395315 tttgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaa 4395381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 42388815 - 42388719
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgc 328  Q
    ||||||||| || ||| |||||||||||||  |||| |||||||||||||||||||| ||||  ||||||||| ||||||| ||  |||||||||||    
T  42388815 aagttttaagatgaaaataacactttttatgtttttgaaaagttgacagcacaaattccaatacaatacttactacatttgacttcttaaccagtgc 42388719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 328
Target Start/End: Complemental strand, 36563180 - 36563038
Alignment:
Q  185 tgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 284  Q
    |||||||||||||||  |||||||||||||| ||||||       |||||||||||| | ||| ||||||||||||| ||||| |  |||||||| ||||    
T  36563180 tgttaaccggtgcccccggggcactggttaaagaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgacatcaca 36563082  T
Q  285 aatttcaatgtaatacttaccacatttggctctttaaccagtgc 328  Q
    | || ||||  ||||||||| |||||||  || |||||||||||    
T  36563081 agttacaatacaatacttactacatttgtttcgttaaccagtgc 36563038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 1294908 - 1294988
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 312  Q
    |||||||||||| ||||||||| |||||||  || | || || |||||||||||||||||||||||||||||  |||||||    
T  1294908 aagttttaaaatgaaagtaacattttttatgtttatgaagagctgacagcacaaatttcaatgtaatacttattacatttg 1294988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 328
Target Start/End: Original strand, 36545134 - 36545276
Alignment:
Q  185 tgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 284  Q
    |||||||||||||||  |||||||||||||| ||||||       |||| ||||||| | ||| ||||||||||||| ||||| |  |||||||| ||||    
T  36545134 tgttaaccggtgcccccggggcactggttaaagaaactaaaaag-gaaaattttaaagtgaaaataacactttttatgcttttgaggagttgacatcaca 36545232  T
Q  285 aatttcaatgtaatacttaccacatttggctctttaaccagtgc 328  Q
    | || ||||  ||||||||| |||||||  || |||||||||||    
T  36545233 agttacaatacaatacttactacatttgtttcgttaaccagtgc 36545276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 4395256 - 4395323
Alignment:
Q  112 ggtgttgttg-tttcatttagaacaaatctcaagagctggatatagtctacacgtatatttcgcaaat 178  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| |||||||| || |||| ||||||    
T  4395256 ggtgttgttgctttgatttagaacaaatctcaagagttggatatggtctacacataaattttgcaaat 4395323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 354
Target Start/End: Original strand, 9799198 - 9799375
Alignment:
Q  178 tgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttga 277  Q
    ||||| ||||||||| ||||||  | |||||||||||||||||||       |||||| |||||||||| ||||||||||||||||||||||| ||||||    
T  9799198 tgggtcatgttaaccagtgcccccgtggcactggttaaggaaactaaaaattgaaagtcttaaaataaaggtaacactttttatacttttcaagagttga 9799297  T
Q  278 cagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg-ctcggggcactggttaacattatcctt 354  Q
    || ||||| || ||||||||||||||||||||||  ||| |||||||||| | | || ||||||||||||||| ||||    
T  9799298 caacacaagttccaatgtaatacttaccacatttaactccttaaccagtgcccctggacactggttaacattaccctt 9799375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 40995823 - 40995942
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcg 331  Q
    |||||||||||| ||| |||||||||||||  |||| || |||||||| |||||||||||||||||||||||| |||||||  ||||||| || |||||     
T  40995823 aagttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaaatttcaatgtaatacttactacatttgattctttaatcaatgctct 40995922  T
Q  332 gg--gcactggttaacatta 349  Q
    ||  ||||||||||||||||    
T  40995923 ggaagcactggttaacatta 40995942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 7222846 - 7222913
Alignment:
Q  230 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaata 299  Q
    |||| |||||||||||||||||||||||||||  |||| || |||  |||||||||||||||||||||||    
T  7222846 gaaaattttaaaataaaagtaacactttttatgtttttgaatagt--acagcacaaatttcaatgtaata 7222913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 312
Target Start/End: Complemental strand, 30478540 - 30478408
Alignment:
Q  179 gggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgac 278  Q
    |||| ||||||||||||||||| ||||||| |||||||||| ||       ||||| |||||||| ||| ||| ||||||| | ||||| | || |||||    
T  30478540 gggtcatgttaaccggtgccctcggggcacgggttaaggaacctaaaaaaggaaag-tttaaaatgaaaataatactttttgtgcttttgagaaattgac 30478442  T
Q  279 agcacaaatttcaatgtaatacttaccacatttg 312  Q
    || |||| |||||| | ||||||||| |||||||    
T  30478441 agtacaagtttcaacgcaatacttactacatttg 30478408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 45397578 - 45397512
Alignment:
Q  235 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactt 302  Q
    ||||||||||||| |||||||||| | |||||| | ||||||||| || |||||||||||||||||||    
T  45397578 ttttaaaataaaaataacacttttaa-actttttagaagttgacaacaaaaatttcaatgtaatactt 45397512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 12000142 - 12000223
Alignment:
Q  231 aaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 312  Q
    ||||||||||| | ||| ||| | ||||||| ||||| | | |||||||||||||||| ||||| || |||||| |||||||    
T  12000142 aaagttttaaagtgaaaataatattttttatgcttttgagatgttgacagcacaaattccaatgcaacacttactacatttg 12000223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 35467786 - 35467831
Alignment:
Q  309 tttggctctttaaccagtgctcggggcactggttaacattatcctt 354  Q
    |||| ||| ||||||||||| |||||||||||||||||||| ||||    
T  35467786 tttgactccttaaccagtgcccggggcactggttaacattaccctt 35467831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 179 - 349
Target Start/End: Complemental strand, 6235 - 6063
Alignment:
Q  179 gggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgac 278  Q
    |||| |||||||||||||  | |||||||| |||||||||||||       |||||||||||||| |||||||||||||||||  |||| ||||||||||    
T  6235 gggttatgttaaccggtgttccaggggcaccggttaaggaaactaaaaaaagaaagttttaaaatgaaagtaacactttttatgtttttgaaaagttgac 6136  T
Q  279 agcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcggg--gcactggttaacatta 349  Q
    |||| ||||| ||||| ||||||||| ||||||| ||| ||||||||||| | ||  ||||||||||||||||    
T  6135 agcataaattccaatgcaatacttactacatttgactccttaaccagtgccccggaagcactggttaacatta 6063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 9e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 178 - 355
Target Start/End: Complemental strand, 19328950 - 19328775
Alignment:
Q  178 tgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttga 277  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||         |||||||||||| ||||||||||||||||||||||| || ||||||    
T  19328950 tgggtcatgttaaccggtgccccgggggcactggttaaggaaactaaaaaaatgaagttttaaaatgaaagtaacactttttatacttttgaagagttga 19328851  T
Q  278 cagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgc--tcggggcactggttaacattatccttt 355  Q
     ||||||| || ||||||||||||||||||||||| ||  ||||||| |||  ||    |||||||||||||||||||||    
T  19328850 tagcacaagttccaatgtaatacttaccacatttgacttcttaaccaatgccttc----cactggttaacattatccttt 19328775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 353 - 419
Target Start/End: Complemental strand, 18050011 - 18049945
Alignment:
Q  353 tttgcaaatttgagtaacaccccatcaaaatgatgatttgtgaattgtacaatagatgtagaaagaa 419  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  18050011 tttgcaaatttgagtaacacaccatcaaaatgatgatttgtgaattgtacaacagatgtagaaagaa 18049945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 27756547 - 27756450
Alignment:
Q  230 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtg 327  Q
    |||| ||||||||| ||| ||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| |||||||  || ||||||||||    
T  27756547 gaaacttttaaaatgaaaataacactttttatgcttttgaagagttgacaacacaaatttcaatgtaatacttactacatttgattccttaaccagtg 27756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 3913724 - 3913647
Alignment:
Q  235 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 312  Q
    ||||||||| ||||||||||||||||||||||| || |||| ||| ||||| || ||| |||||||||||||||||||    
T  3913724 ttttaaaatgaaagtaacactttttatacttttgaagagttaacaacacaagttccaacgtaatacttaccacatttg 3913647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 38510000 - 38509880
Alignment:
Q  235 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgctcgggg 334  Q
    ||||||||||||| |||||||||| |||||||| |  |||||||| ||||| || ||||| |||| |||  |||||||  || ||||| |||| || ||     
T  38510000 ttttaaaataaaaataacacttttcatacttttgaggagttgacaacacaagttccaatgcaatatttattacatttgattccttaacaagtgttccgga 38509901  T
Q  335 cactggttaacattatccttt 355  Q
    ||| ||||||||||| |||||    
T  38509900 caccggttaacattacccttt 38509880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 18050070 - 18050003
Alignment:
Q  112 ggtgttgttg-tttcatttagaacaaatctcaagagctggatatagtctacacgtatatttcgcaaat 178  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| |||||||| || |||| ||||||    
T  18050070 ggtgttgttgctttgatttagaacaaatctcaagagttggatatggtctacacataaattttgcaaat 18050003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 4687363 - 4687425
Alignment:
Q  231 aaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaat 293  Q
    ||||||||||| ||||| ||||||||||||| ||||| | ||||||| |||||||||| ||||    
T  4687363 aaagttttaaagtaaaaataacactttttatgcttttgagaagttgatagcacaaattccaat 4687425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 3427938 - 3427861
Alignment:
Q  235 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttg 312  Q
    ||||||||| ||| |||||||||||||  |||| || |||||||| ||||| |||||||  ||||||||| |||||||    
T  3427938 ttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaagtttcaatacaatacttactacatttg 3427861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 25474657 - 25474715
Alignment:
Q  235 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaat 293  Q
    ||||||||| ||| ||||| ||||||| ||||| || |||||||| |||||||||||||    
T  25474657 ttttaaaatgaaaataacattttttatgcttttgaagagttgacaacacaaatttcaat 25474715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 30486952 - 30487048
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccagtgc 328  Q
    |||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||| ||||||||| ||||||| ||| |||||||||||    
T  30486952 aagttttaaaataaaagtaacattttttatattttttaaaagttgacggcacaaatttcaatgcaatacttacgacatttgactccttaaccagtgc 30487048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 37720509 - 37720635
Alignment:
Q  185 tgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 284  Q
    ||||||||| |||||   ||||||||||||||||||||       |||||||||||| | ||| ||||||||||||| ||||| |  |||||||||||||    
T  37720509 tgttaaccgatgcccccagggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttgaggagttgacagcaca 37720607  T
Q  285 aatttcaatgtaatacttaccacatttg 312  Q
      || ||||| ||||||||| |||||||    
T  37720608 tgttccaatgcaatacttactacatttg 37720635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 28710390 - 28710485
Alignment:
Q  230 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacatttggctctttaaccag 325  Q
    |||||||||||| | ||| ||||| |||||||  |||| |  ||||  ||||||||||| ||||||||||||||| |||||||  || ||||||||    
T  28710390 gaaagttttaaagtgaaaataacaatttttatgtttttgaggagttagcagcacaaattccaatgtaatacttactacatttgattccttaaccag 28710485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 28988361 - 28988512
Alignment:
Q  202 ggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttata--cttttcaaaagttgacagcacaaatttcaatgtaata 299  Q
    |||||||||||||||||||||       | || ||||||||| ||||||||||||||| ||  ||||| ||||||||||  |||||||||||||||||||    
T  28988361 ggggcactggttaaggaaactaaaaaaaggaaattttaaaatgaaagtaacactttttttatgcttttgaaaagttgacgacacaaatttcaatgtaata 28988460  T
Q  300 cttaccacatttggctctttaaccagtg--ctcggggcactggttaacatta 349  Q
     |||||||||||| ||| ||||||||||  |  ||| |||||||||||||||    
T  28988461 attaccacatttgactccttaaccagtggccctgggacactggttaacatta 28988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 184 - 348
Target Start/End: Complemental strand, 21067739 - 21067574
Alignment:
Q  184 atgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcac 283  Q
    |||||||||| ||||   || ||||||||||||||||||       | |||||||||||| ||||||  ||||||||| ||||| || || ||||| |||    
T  21067739 atgttaaccgatgcctccggtgcactggttaaggaaactcaaaaaaggaagttttaaaatgaaagtactactttttatgcttttgaagagatgacaacac 21067640  T
Q  284 aaatttcaatgtaatacttaccacatttggctctttaaccagtgctcgg-ggcactggttaacatt 348  Q
    || |||||||||||||||||| ||||||| ||| |||||||||   ||| ||||||||||||||||    
T  21067639 aagtttcaatgtaatacttactacatttgactccttaaccagtttccggaggcactggttaacatt 21067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 206 - 355
Target Start/End: Complemental strand, 24233277 - 24233126
Alignment:
Q  206 cactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttacc 305  Q
    |||||||||||||||||       | |||||| || || |||||||||||||||||| |||| ||||||||||||||||| || ||||| ||||||||      
T  24233277 cactggttaaggaaactaaaaaaaggaagtttgaagatgaaagtaacactttttatatttttgaaaagttgacagcacaagttccaatgcaatacttatt 24233178  T
Q  306 acatttggctctttaaccagtgctc--ggggcactggttaacattatccttt 355  Q
    ||||||| ||| ||||| |||| ||  ||| ||||||||||||||| |||||    
T  24233177 acatttgactccttaactagtgttccggggacactggttaacattacccttt 24233126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 39753318 - 39753387
Alignment:
Q  232 aagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatact 301  Q
    |||||||||||| ||||||| ||||||||| ||||| || |||||||||||||| |||||||||||||||    
T  39753318 aagttttaaaatgaaagtaatactttttatgcttttgaagagttgacagcacaagtttcaatgtaatact 39753387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 19187217 - 19187144
Alignment:
Q  230 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactta 303  Q
    |||||||||||||| |||  |||||||||||| ||||| || |||||||| ||||||||||||||||| |||||    
T  19187217 gaaagttttaaaatgaaaacaacactttttatgcttttgaagagttgacaacacaaatttcaatgtaaaactta 19187144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 36603640 - 36603769
Alignment:
Q  175 aaatgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagt 274  Q
    |||||||| ||||||||| || |||  |||||||| ||||||||| ||       |||||||||||||| ||||| |||||||||||  |||| || |||    
T  36603640 aaatgggtcatgttaaccagtaccccgggggcactagttaaggaacctaaaaaaagaaagttttaaaatgaaagtgacactttttatgtttttgaagagt 36603739  T
Q  275 tgacagcacaaatttcaatgtaatacttac 304  Q
    ||||| ||||| || ||||| |||||||||    
T  36603740 tgacaacacaagttccaatgcaatacttac 36603769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 202 - 322
Target Start/End: Complemental strand, 14123006 - 14122887
Alignment:
Q  202 ggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatact 301  Q
    |||||||||||||||||||||       | |||||||||||| ||||||||||||| ||| ||||| || ||||||||   || ||| ||| ||||||||    
T  14123006 ggggcactggttaaggaaactaaaagaaggaagttttaaaatgaaagtaacactttatatgcttttgaatagttgaca-atcatattccaaggtaatact 14122908  T
Q  302 taccacatttggctctttaac 322  Q
    ||||||||||| ||| |||||    
T  14122907 taccacatttgactccttaac 14122887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 1180025 - 1179953
Alignment:
Q  230 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatactt 302  Q
    |||| ||||||||||||| |||||||||||||  |||| | ||||||||| || || ||||||||||||||||    
T  1180025 gaaaattttaaaataaaaataacactttttatgttttttagaagttgacaacataagtttcaatgtaatactt 1179953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 38282569 - 38282505
Alignment:
Q  235 ttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaata 299  Q
    ||||||||| ||| |||||||||||||| |||| || |||||||| ||||||||| |||||||||    
T  38282569 ttttaaaatgaaaataacactttttatatttttaaagagttgacaacacaaattttaatgtaata 38282505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 39031741 - 39031661
Alignment:
Q  230 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttaccacattt 311  Q
    |||||||||||||| ||||||| | |||||||  |||| || | ||||||||| |||||| ||||||||| |||||||||||    
T  39031741 gaaagttttaaaatgaaagtaatattttttatg-ttttgaataattgacagcataaattttaatgtaatatttaccacattt 39031661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 312
Target Start/End: Complemental strand, 1415 - 1280
Alignment:
Q  177 atgggtgatgttaaccggtgccctaggggcactggttaaggaaactnnnnnnngaaagttttaaaataaaagtaacactttttatacttttcaaaagttg 276  Q
    |||||| ||||||||||||||||  ||||||| || ||||||| ||       |||| ||||||||| ||| ||||| ||||||| ||||| |  |||||    
T  1415 atgggtcatgttaaccggtgcccctggggcacgggctaaggaacctaaaaaaagaaatttttaaaatgaaaataacattttttatgcttttgatgagttg 1316  T
Q  277 acagcacaaatttcaatgtaatacttaccacatttg 312  Q
    ||| ||||| |  ||||| ||||||||| |||||||    
T  1315 acaacacaagtaccaatgcaatacttactacatttg 1280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 17170671 - 17170745
Alignment:
Q  230 gaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaaatttcaatgtaatacttac 304  Q
    |||| ||||||||||||| |||||||||||||| |||| |||| || ||| || |||||  ||||||| ||||||    
T  17170671 gaaaattttaaaataaaaataacactttttatatttttaaaaaattaacaacataaattctaatgtaaaacttac 17170745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University