View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_138 (Length: 258)
Name: NF8901_low_138
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_138 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 29918780 - 29918532
Alignment:
| Q |
1 |
acctgttgagcctataaaggttcaaaaagcaacatggatggctgatggatctcattggccagggacttggttgaacacttcgcctgagcactcaaggggt |
100 |
Q |
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| T |
29918780 |
acctgttgagcctataaaggttcaaaaagcaacatggatggctgatggatctcattggccagggacttggttgaacacttcgcctgagcactcaaggggt |
29918681 |
T |
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| Q |
101 |
gaccatgctggcataattcaggtactaagtactaaacttttgaaattgctgctgtgatctatgaaattatnnnnnnnttcagttagagaattagtaatat |
200 |
Q |
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| T |
29918680 |
gaccatgctggcataattcaggtactaagtactaaacttttgaaattgctgctgtgatctatgaaattataaaaaaattcagttagagaattagtaatat |
29918581 |
T |
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| Q |
201 |
aaatcaagattcaaannnnnnnccattttctcacacctattgatgtcca |
249 |
Q |
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| T |
29918580 |
aaatcaagattcaaattattttccattttctcacacctatttatgtcca |
29918532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 47918479 - 47918600
Alignment:
| Q |
87 |
agcactcaaggggtgaccatgctggcataattcaggtactaagtactaaacttttgaaattgctgctgtgatctatgaaattatnnnnnnnttcagttag |
186 |
Q |
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| T |
47918479 |
agcactcaaagggtgaccattccggcataattcaggtacta---attaagcttttgaaattgctgctgcaatctatgatattataaaaaattgcagtcag |
47918575 |
T |
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| Q |
187 |
agaattagtaatataaatcaagatt |
211 |
Q |
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| T |
47918576 |
agtattagtaatataaatcaagatt |
47918600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 15419144 - 15419100
Alignment:
| Q |
26 |
aaagcaacatggatggctgatggatctcattggccagggacttgg |
70 |
Q |
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| T |
15419144 |
aaagctacatggatggctgatggtactcattggccaggaacttgg |
15419100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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