View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8901_low_14 (Length: 747)
Name: NF8901_low_14
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 702; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 17 - 741
Target Start/End: Original strand, 36892675 - 36893400
Alignment:
| Q |
17 |
atcaagaaaaagatgacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36892675 |
atcaagaaaaagatgacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaagtaccaagtgccattcataaca |
36892774 |
T |
|
| Q |
117 |
ctacctcaagaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgattaagcattcaaaaccagaact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36892775 |
ctacctcaagaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgattaagcattcaaaaccagaact |
36892874 |
T |
|
| Q |
217 |
ttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcagattgctggt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36892875 |
ttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagccgaggcattaggtggtgataaaccttggcagattgctggt |
36892974 |
T |
|
| Q |
317 |
tctgccttgcaaatgatgtgggatataaaatggtttcaggtacataaaat-gtataatctttatctcttccaagtgaaaatgtttgtacaagttgatcca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36892975 |
tctgccttgcaaatgatgtgggatataaaatggtttcaggtacataaaattgtataatctttatctcttccaagtgaaaatgtttgtacaagttgatcca |
36893074 |
T |
|
| Q |
416 |
tgtgattattttttatttatgttaaattggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36893075 |
tgtgattattttttatttatgttaaattggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaag |
36893174 |
T |
|
| Q |
516 |
agaaattttcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36893175 |
agaaattttcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagct |
36893274 |
T |
|
| Q |
616 |
ggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccattt |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36893275 |
ggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccattt |
36893374 |
T |
|
| Q |
716 |
cttcacttattggtctctgctcctcc |
741 |
Q |
| |
|
|||||||||| |||||||||| |||| |
|
|
| T |
36893375 |
cttcacttatcggtctctgcttctcc |
36893400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 31 - 362
Target Start/End: Original strand, 36881599 - 36881936
Alignment:
| Q |
31 |
gacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaa |
130 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| |||| | |||||| ||| |
|
|
| T |
36881599 |
gacaccatttttggttgcagcgaaaaatggaatagttgaactggttaacgaatttctagacaaaattccaagtgccattcatgacacaaactcaaggaaa |
36881698 |
T |
|
| Q |
131 |
gaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgag------aatgattaagcattcaaaaccagaactttggaata |
224 |
Q |
| |
|
||||||||||||| ||||||||| || | || ||||| ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
36881699 |
gaaaatgtattgcatgttgcagtgaagtcaagacaacccgttattgttgagacattgagaatgagaatgattaagcactcaaaaccagaactttggaata |
36881798 |
T |
|
| Q |
225 |
atttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcagattgctggttctgcctt |
324 |
Q |
| |
|
| || ||||||||||||||| |||| ||||||||| ||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
36881799 |
acttaattcttgcaatggataaggaggagaatacaatattgcatttggcagcaaaggcactaggtgatggtaaaccttggcagattgctggttctgcctt |
36881898 |
T |
|
| Q |
325 |
gcaaatgatgtgggatataaaatggtttcaggtacata |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36881899 |
acaaatgatgtgggatataaaatggtttcaggtacata |
36881936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 442 - 736
Target Start/End: Original strand, 36883098 - 36883392
Alignment:
| Q |
442 |
ttggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaag |
541 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| || |||| ||||| || |||||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
36883098 |
ttggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaa |
36883197 |
T |
|
| Q |
542 |
gtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgc |
641 |
Q |
| |
|
||||||| |||| || ||| |||||||||||||| || ||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
36883198 |
atcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaagcca |
36883297 |
T |
|
| Q |
642 |
tgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctttgccatttcttcacttattggtctctgct |
736 |
Q |
| |
|
||||||||||||||||| ||| |||| || || ||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| |||| |
|
|
| T |
36883298 |
agtacctggcggcacaaccgatgaaggcagtccagtattagaaggcaagcctgcatttgacgcctttgccatttcttcacttatcggtctttgct |
36883392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 444 - 707
Target Start/End: Original strand, 36902908 - 36903168
Alignment:
| Q |
444 |
ggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggt |
543 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||| | || ||||| || ||||||||| | | | || |||||| || |||| ||||| |
|
|
| T |
36902908 |
ggagcagtatatcaaaagccttgtgccagaacacttacatttgacaagcaacaacaaaggcaaaacagctgaaaatatcttcaaggaatcacatgaaggt |
36903007 |
T |
|
| Q |
544 |
cttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctg |
643 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||| | || |||||||| |||||| | || ||||| ||||||| |||||| ||||| |||| || | |
|
|
| T |
36903008 |
cttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcag |
36903107 |
T |
|
| Q |
644 |
tacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctt |
707 |
Q |
| |
|
|||||||||| ||||||| | |||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
36903108 |
tacctggcggaacaactg---agggtagaccagtattagaaggcaatcctgcattcaatgtctt |
36903168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 213 - 362
Target Start/End: Original strand, 36901989 - 36902141
Alignment:
| Q |
213 |
aactttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcag---at |
309 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||||| | |||||||| ||||||||||||||||||||||| || || |||||||||| | ||| || |
|
|
| T |
36901989 |
aactttggaatagcttggttcttgcaaaggatgataagcagaatacaatattgcatttggcagcagaggcacaagctgttgataaacctggacagaatat |
36902088 |
T |
|
| Q |
310 |
tgctggttctgccttgcaaatgatgtgggatataaaatggtttcaggtacata |
362 |
Q |
| |
|
|||| | ||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36902089 |
tgctaggtctgcattacaaatgatgtgggatatgaaatggtttcaggtacata |
36902141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 36901716 - 36901846
Alignment:
| Q |
33 |
caccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaaga |
132 |
Q |
| |
|
||||| ||||||||||||| | |||||| ||| ||||||||| || ||||||||||| || ||||| |||| | | || |||| |||||| ||| | |
|
|
| T |
36901716 |
caccaattttggttgcagctagaaatggcatatatgaaatggtgaaagaaattctaatcgaagcaccaactgccctccgtagtactaactcaagcaaaca |
36901815 |
T |
|
| Q |
133 |
aaatgtattgcttgttgcagtcaaatacagg |
163 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
36901816 |
aaatgtattgcttgttgcagtagaatacagg |
36901846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 23278833 - 23278879
Alignment:
| Q |
312 |
ctggttctgccttgcaaatgatgtgggatataaaatggtttcaggta |
358 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23278833 |
ctggtgctgccttgcaaatgatgtggcatataaaatggtttcaggta |
23278879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University