View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_144 (Length: 255)
Name: NF8901_low_144
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_144 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: scaffold0042 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 32503 - 32726
Alignment:
| Q |
19 |
gcttgaaataagttggaccagtgtatgaatttcccacacgtgtcgagcaactgtcatataagtgacagacactaacatgtgtcgaacaccacaacatgtc |
118 |
Q |
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| T |
32503 |
gcttgaaataagttggacacatgtatgaatttccctcacctgtcgagcaattgtcatacaagtgacagacac----atgtgtcgaacaccacaacatgtc |
32598 |
T |
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| Q |
119 |
taatcctagtggcatctgttcttcatatatttgatttcgtgtgagtagaaacaaattctaaatctaagtttttgaccat-aaaaaattccaaagtagcat |
217 |
Q |
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|||||||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32599 |
taatcctagtggcatcccttcttcatatatttgatctcttttgagtagaaacaaattctaaatctaagtttttgaccataaaaaaattccaaagtagcat |
32698 |
T |
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| Q |
218 |
aaatttatattctctaaggttctaacac |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32699 |
aaatttatattctctaaggttctaacac |
32726 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 44625899 - 44625826
Alignment:
| Q |
171 |
aaattctaaatctaagtttttgaccataaaaaattccaaagtagcataaatttatattctctaaggttctaacac |
245 |
Q |
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|||||||||| ||||| | |||||||||||| ||||||||||||||| |||||||||| |||||| ||||||||| |
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| T |
44625899 |
aaattctaaaactaaggtcttgaccataaaatattccaaagtagcatcaatttatatt-tctaagattctaacac |
44625826 |
T |
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