View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_149 (Length: 250)

Name: NF8901_low_149
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_149
NF8901_low_149
[»] scaffold0586 (1 HSPs)
scaffold0586 (15-237)||(9610-9832)
[»] chr8 (2 HSPs)
chr8 (15-237)||(10637665-10637887)
chr8 (15-237)||(32717707-32717929)
[»] chr1 (2 HSPs)
chr1 (15-237)||(22893820-22894046)
chr1 (13-130)||(44306145-44306261)
[»] chr6 (2 HSPs)
chr6 (15-237)||(19701177-19701404)
chr6 (15-136)||(21481443-21481564)
[»] chr7 (3 HSPs)
chr7 (15-121)||(13331532-13331638)
chr7 (15-121)||(13342447-13342553)
chr7 (14-130)||(33430221-33430338)
[»] chr5 (1 HSPs)
chr5 (15-121)||(5672003-5672109)
[»] chr2 (2 HSPs)
chr2 (13-130)||(6049928-6050045)
chr2 (15-136)||(26661525-26661646)
[»] chr4 (1 HSPs)
chr4 (11-130)||(13893695-13893814)
[»] chr3 (1 HSPs)
chr3 (16-121)||(15761974-15762079)


Alignment Details
Target: scaffold0586 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 9610 - 9832
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9610 gtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 9709  T
Q  115 ggtgatttatatcatttctctgnnnnnnngtcttctgatgttgcttattgctttgttactaaatgaatttgttatttctctgcttgcttattgcttttga 214  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  9710 ggtgatttatatcatttctctgtttttttgtcttctgatgttgcttattgctttgttacttaatgaatttgtcatttctctgcttgcttattgcttttga 9809  T
Q  215 tgtcgcatcatttatctgtttgc 237  Q
    |||||||||||||||||||||||    
T  9810 tgtcgcatcatttatctgtttgc 9832  T

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Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 10637665 - 10637887
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10637665 gtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactcaacatagattt 10637764  T
Q  115 ggtgatttatatcatttctctgnnnnnnngtcttctgatgttgcttattgctttgttactaaatgaatttgttatttctctgcttgcttattgcttttga 214  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10637765 ggtgatttatatcatttctctgtttttttgtcttctgatgttgcttattgctttgttactaaatgaatttgtcatttccctgcttgcttattgcttttga 10637864  T
Q  215 tgtcgcatcatttatctgtttgc 237  Q
    ||||||||||||||||| |||||    
T  10637865 tgtcgcatcatttatctttttgc 10637887  T

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Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 32717929 - 32717707
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32717929 gtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 32717830  T
Q  115 ggtgatttatatcatttctctgnnnnnnngtcttctgatgttgcttattgctttgttactaaatgaatttgttatttctctgcttgcttattgcttttga 214  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  32717829 ggtgatttatatcatttctctgtttttttgtcttctgatgttgcttattgctttgttgctaaatgaatttgtcatttctctgcttgcttattgtttttga 32717730  T
Q  215 tgtcgcatcatttatctgtttgc 237  Q
    ||| |||||||||||||||||||    
T  32717729 tgttgcatcatttatctgtttgc 32717707  T

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Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 22893820 - 22894046
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22893820 gtgttcatcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccattactcaacatagattt 22893919  T
Q  115 ggtgatttatatcatttctctg----nnnnnnngtcttctgatgttgcttattgctttgttactaaatgaatttgttatttctctgcttgcttattgctt 210  Q
    ||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  22893920 ggtgatttatatcatttctctgtttttttttttgtcttctgatgttgcttattgctttgttactaaatgaatttgtcatttctctgtttgcttattgctt 22894019  T
Q  211 ttgatgtcgcatcatttatctgtttgc 237  Q
     ||||||||||| ||||||||||||||    
T  22894020 ctgatgtcgcataatttatctgtttgc 22894046  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 44306145 - 44306261
Alignment:
Q  13 tggtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagat 112  Q
    ||||||||||||||| |||||| |||  ||| ||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||    
T  44306145 tggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatc-aaattcttttcaattcttccattactcaacatagat 44306243  T
Q  113 ttggtgatttatatcatt 130  Q
    ||||| ||| ||||||||    
T  44306244 ttggtcattgatatcatt 44306261  T

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Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 19701177 - 19701404
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19701177 gtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 19701276  T
Q  115 ggtgatttatatcatttctctg-----nnnnnnngtcttctgatgttgcttattgctttgttactaaatgaatttgttatttctctgcttgcttattgct 209  Q
    | ||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19701277 gttgatttatatcatttctctgatttttttttttgtcttctgatgttgcttattgctttgttactaaatgaatttgtcatttctctgcttgcttattgct 19701376  T
Q  210 tttgatgtcgcatcatttatctgtttgc 237  Q
    | ||||||| ||||||||||||||||||    
T  19701377 tctgatgtcacatcatttatctgtttgc 19701404  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 21481443 - 21481564
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    |||| ||||||||||||||   ||| ||||| |||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  21481443 gtgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattactcaacatagattt 21481542  T
Q  115 ggtgatttatatcatttctctg 136  Q
    ||||||| |||||| |||||||    
T  21481543 ggtgattgatatcaattctctg 21481564  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 13331638 - 13331532
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||    
T  13331638 gtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagattt 13331539  T
Q  115 ggtgatt 121  Q
    |||||||    
T  13331538 ggtgatt 13331532  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 13342553 - 13342447
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||    
T  13342553 gtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagattt 13342454  T
Q  115 ggtgatt 121  Q
    |||||||    
T  13342453 ggtgatt 13342447  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 33430338 - 33430221
Alignment:
Q  14 ggtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaa-tttcattttaattcttccattactcaacatagat 112  Q
    |||||||||||| |  ||||| ||||  ||||| |||||||| |||||||||||||||||||||| |||  |||||||  |||||||||||||| |||||    
T  33430338 ggtgttcatcaagtgtttgctatttggattttgaatttcactattctcttcaaggtaccatctaattttttttttaatcgttccattactcaacgtagat 33430239  T
Q  113 ttggtgatttatatcatt 130  Q
    ||| ||||| | ||||||    
T  33430238 ttgatgattgacatcatt 33430221  T

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Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 5672109 - 5672003
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||    
T  5672109 gtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagattt 5672010  T
Q  115 ggtgatt 121  Q
    |||||||    
T  5672009 ggtgatt 5672003  T

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Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 6049928 - 6050045
Alignment:
Q  13 tggtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagat 112  Q
    ||||||||||||||| |||||| |||  ||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  6049928 tggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagat 6050027  T
Q  113 ttggtgatttatatcatt 130  Q
    ||||||||| ||||||||    
T  6050028 ttggtgattgatatcatt 6050045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 26661525 - 26661646
Alignment:
Q  15 gtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    |||| |||||||| |||||   ||| ||||| |||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  26661525 gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagattt 26661624  T
Q  115 ggtgatttatatcatttctctg 136  Q
    ||||||| |||||| |||||||    
T  26661625 ggtgattgatatcaattctctg 26661646  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 13893814 - 13893695
Alignment:
Q  11 tttggtgttcatcaactacttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatag 110  Q
    ||||||||||||||||| |||| | |||  ||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  13893814 tttggtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatag 13893715  T
Q  111 atttggtgatttatatcatt 130  Q
    ||||||||||| ||||||||    
T  13893714 atttggtgattgatatcatt 13893695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 15762079 - 15761974
Alignment:
Q  16 tgttcatcaactacttgctg-tttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagattt 114  Q
    ||||||||||||| |||||  |||| |||||| |||||||| |||| ||||| ||||||||||||||||| | |||||||| ||||||||||||||||||    
T  15762079 tgttcatcaactatttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagattt 15761981  T
Q  115 ggtgatt 121  Q
    |||||||    
T  15761980 ggtgatt 15761974  T

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