View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_156 (Length: 244)
Name: NF8901_low_156
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_156 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 35928399 - 35928181
Alignment:
| Q |
22 |
atatatatattgtaactgccctcttcacataatgtgatcatgtggctatatagcatgcatgatatagtgctctactttttcgtaataaagttggacaagt |
121 |
Q |
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| T |
35928399 |
atatatatattgtaactgccctcttcacataatgtgatcatgtggctatatagcatgcatgatatagtgctctactttttcgtaataaagttggacaagt |
35928300 |
T |
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| Q |
122 |
tttctttactcacttcatgattctaagagatagatagaataaaagagttggattaaaattaaataagacatcaagataggataacctcttatcatatctt |
221 |
Q |
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| T |
35928299 |
tt-ctttactcacttcatgattctaagagatagatagaataaaagagttggattaaaattaaataacacatcaagataggataagctcttatcatatctt |
35928201 |
T |
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| Q |
222 |
gcgtatgatgtccatctcat |
241 |
Q |
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||||||||||| |||||||| |
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| T |
35928200 |
gcgtatgatgttcatctcat |
35928181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35928466 - 35928436
Alignment:
| Q |
1 |
tttgtcgattgtggtgactaaatatatatat |
31 |
Q |
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| T |
35928466 |
tttgtcgattgtggtgactaaatatatatat |
35928436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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