View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_161 (Length: 242)
Name: NF8901_low_161
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_161 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 38512620 - 38512478
Alignment:
| Q |
100 |
actacaaacggcaagtcaagattacaacaaatggaagaactgctactatataaagcgctagcttggaccaaattctagtttatgggagtttctcagttag |
199 |
Q |
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| T |
38512620 |
actagaaacggcaagtcaagactacaacaaatggaagaactgctactatataaagcgctagcttggaccaaattctagtttatgggagtttctcagttag |
38512521 |
T |
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| Q |
200 |
aataagtttatgtttcttcacttgcaaaaaagtccttaaaagc |
242 |
Q |
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| T |
38512520 |
aataagtttatgtttcttcacttgcaaaaaagtccttaaaagc |
38512478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 38512746 - 38512636
Alignment:
| Q |
7 |
atggacatcaaaacaagaaatgtggagagggtttcttctagtttttgtgatgaagtaaacaaaggc-ttgattgggttgcatgcaaaagccaagactaca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38512746 |
atggacatcaaaacaagaaatgtggagagggtttcttctagtttttgtgatgaagtaaacaaaggctttgattgggttgcatgcaaaagccaagactaca |
38512647 |
T |
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| Q |
106 |
aacggcaagtc |
116 |
Q |
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| T |
38512646 |
aacggcaagtc |
38512636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 1743554 - 1743503
Alignment:
| Q |
179 |
ttatgggagtttctcagttagaataagtttatgtttcttcacttgcaaaaaa |
230 |
Q |
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| T |
1743554 |
ttatgggagcttctcatttagaataagtttatggttcttcacttacaaaaaa |
1743503 |
T |
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