View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8901_low_162 (Length: 242)
Name: NF8901_low_162
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_162 |
 | |
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| [»] chr3 (4 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0304 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
| | |
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| [»] scaffold0897 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0108 (1 HSPs) |
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| [»] scaffold0319 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0107 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 10786774 - 10787002
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaataaactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagtttcaaaataagctctaaaagag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10786774 |
atcatacaagagtaattcgaaaataaacataaacatagcatttcattaaagccaactaatgggcggtttacacaaagtttcaaaataagctctaaaagag |
10786873 |
T |
|
| Q |
113 |
cgcaaaagtaaaccattacaaaagaaatgctataagaaagaaaatggctttttcgatggaaaaccttacgcaagttggccaaagccaaagagatcgagga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
10786874 |
cgcaaaagtaaaccattacaaaagaaatgctataagaaagaaaatggc-ttttcgatggaaaaccctacgcaagttggccaaagctaaagagatcgagga |
10786972 |
T |
|
| Q |
213 |
accatcgaatttcgctatctagacgacacc |
242 |
Q |
| |
|
||||||||| ||||||||| |||||||||| |
|
|
| T |
10786973 |
accatcgaacttcgctatccagacgacacc |
10787002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 7361020 - 7360793
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaa--taaactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagtttcaaaataagctctaaaag |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7361020 |
atcatacaagagtaattcgaaaagataaacccaaacatagcatttcattaa-gccaactaatgggcggtttacacaaaatttcaaaataagctctaaaag |
7360922 |
T |
|
| Q |
111 |
agcgcaaaagtaaaccattacaaaagaaatgctataagaaagaaaatggctttttcgatggaaaaccttacgcaagttggccaaagccaaagagatcgag |
210 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || | ||||||| | || ||||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
7360921 |
agcgc-gaagtaaaccattacaaaagaaatgctacaa-acagaaaat-gattcttcgatggaaagtcctacataagttggccaaagccaaagagatcgag |
7360825 |
T |
|
| Q |
211 |
gaaccatcgaatttcgctatctagacgacacc |
242 |
Q |
| |
|
|||||||||||| ||||| || |||||||||| |
|
|
| T |
7360824 |
gaaccatcgaatctcgctgtccagacgacacc |
7360793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 14689018 - 14688791
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaa--taaactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagtttcaaaataagctctaaaag |
110 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
14689018 |
atcatacaagagtaattcgaaaagataaattcaaacatagcatttcatggg-gccaactgatgggcggtttacacaaaatttcaaaataaactctaaaa- |
14688921 |
T |
|
| Q |
111 |
agcgca-aaagtaaaccattacaaaagaaatgctataagaaagaaaatggctttttcgatggaaaaccttacgcaagttggccaaagccaaagagatcga |
209 |
Q |
| |
|
|| ||| |||||||||||||||||| ||||||||| || | |||||||| || |||||||||||| | ||| ||||||||||||||||||||||| || |
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|
| T |
14688920 |
agagcacaaagtaaaccattacaaa-gaaatgctacaa-acagaaaatga-ttcttcgatggaaaaacctacataagttggccaaagccaaagagattga |
14688824 |
T |
|
| Q |
210 |
ggaaccatcgaatttcgctatctagacgacacc |
242 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| |
|
|
| T |
14688823 |
ggaaccatcgaatctcgctgtccagacgacacc |
14688791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 10157527 - 10157661
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaataaac--tcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagt----ttcaaaataagctcta |
106 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
10157527 |
atcatacaagagtaattcgaaaagaaaagttcaaacatggcatttcat-aaggccaactaatgggcggtttacacaaaataaacttcaaaatgggctcta |
10157625 |
T |
|
| Q |
107 |
aaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10157626 |
aa-gagcgcaaa-gtaaaccattacaaaagaaatgcta |
10157661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 41375972 - 41375747
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaa-taaactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagtttcaaaataagctctaaaaga |
111 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41375972 |
atcatacaagagtaattcgaaaaataaactcaaacatagcattccattag-gccaactaatgggcggtttacacaaagtttcaaaataagctctagaaga |
41375874 |
T |
|
| Q |
112 |
gcgcaaaagtaaaccattacaaaagaaatgctataagaaagaaaatggctttttcgatggaaaaccttacgcaagttggccaaagccaaagagatcgagg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
41375873 |
gcgcaaaagtaaaccattacaaaagaaatgctataaaaaagaaaatgg-tttttcgatggaaaaccctacacaagttggccaaagccaaagagatcgagg |
41375775 |
T |
|
| Q |
212 |
aaccatcgaatttcgctatctagacgac |
239 |
Q |
| |
|
||||||||||| |||||||| ||||||| |
|
|
| T |
41375774 |
aaccatcgaatctcgctatccagacgac |
41375747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 22080697 - 22080818
Alignment:
| Q |
119 |
agtaaaccattacaaaagaaatgctataagaaagaaaatggctttttcgatggaaaaccttacgcaagttggccaaagccaaagagatcgaggaaccatc |
218 |
Q |
| |
|
||||||||| |||||||||||||||| || | |||||||| || ||||||||||| || ||| ||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
22080697 |
agtaaaccactacaaaagaaatgctacaa-acagaaaatga-ttcttcgatggaaagccctacataagctggccaaatccaaaaagatcgaggaaccatc |
22080794 |
T |
|
| Q |
219 |
gaatttcgctatctagacgacacc |
242 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
22080795 |
gaatctcgctatctagacgacacc |
22080818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 1729591 - 1729820
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaa-taaactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagtttcaaaataagctctaaaaga |
111 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
1729591 |
atcatacaagagtaattcaaaaaataaactcaaacatagcattccattag-gccaactaatgggtggtttacacaaagtttcaaaataagctctagaaga |
1729689 |
T |
|
| Q |
112 |
gcgcaaaagtaaaccattaca-aaagaaatgctataagaaagaaaatggctttttcgatggaaaaccttacgcaagttggccaaagccaaagagatcgag |
210 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1729690 |
gcgcaaaagtaaaccattatagaaaaaaatgctataaaaaagaaaatggtttttt-gatggaaaaccctacgcaagttggccaaagccaaagagatcgag |
1729788 |
T |
|
| Q |
211 |
gaaccatcgaatttcgctatctagacgacacc |
242 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| |
|
|
| T |
1729789 |
gaaccatcgaatctcgctatccagacgacacc |
1729820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 14329550 - 14329322
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaa--taaactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagtttcaaaataagctctaaaa- |
109 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||||||||||| || |||| ||||||||||||||||||| | ||| |||||| ||||||||| |
|
|
| T |
14329550 |
atcatacaagagtaattcgaaaagatagactcaaatatagcatttcatgaa-gccagctaatgggcggtttacacataatttaaaaataggctctaaaaa |
14329452 |
T |
|
| Q |
110 |
gagcgcaaaagtaaaccattacaaaagaaatgctataagaaagaaaatggctttttcgatggaaaaccttacgcaagttggccaaagccaaagagatcga |
209 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||||| || | |||||||| || ||||||||| | || ||| |||||||||||||||||||||||||| |
|
|
| T |
14329451 |
gagcgcgaa-gtaaaccgttacaaaagaaatgctacaa-acagaaaatga-ttcttcgatggagatccctacataagttggccaaagccaaagagatcga |
14329355 |
T |
|
| Q |
210 |
ggaaccatcgaatttcgctatctagacgacacc |
242 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| |
|
|
| T |
14329354 |
ggaaccatcgaatatcgctgtccagacgacacc |
14329322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 18167203 - 18167072
Alignment:
| Q |
17 |
tacaagagtaattcgaaaata--aactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaa----gtttcaaaataagctctaaaag |
110 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
18167203 |
tacaagagtaattcgaaaagacaaattcaaacatagcatttcat-aaggccaactaatgggcggtttacacaaaaaagacttcaaaatgagctctaaaag |
18167105 |
T |
|
| Q |
111 |
agcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
18167104 |
agcgc-aaagtaaaccattacaaaagaaatgcta |
18167072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 242
Target Start/End: Original strand, 24954362 - 24954563
Alignment:
| Q |
38 |
aactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagtttcaaaataagctct-aaaagagcgcaaaagtaaaccattacaaaag |
136 |
Q |
| |
|
|||||||| |||||||||||| || |||||||||||||||||||||||| | |||||||| | ||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
24954362 |
aactcaaatatagcatttcatgaa-gccaactaatgggcggtttacacataatttcaaaagaggctctaaaaagagcgc-gaagtaaaccattacaaaag |
24954459 |
T |
|
| Q |
137 |
aaatgctataagaaagaaaatggctttttcgatggaaaaccttacgcaagttggccaaagccaaagagatcgaggaaccatcgaatttcgctatctagac |
236 |
Q |
| |
|
|||||||| || | ||||||| || ||||||||| | || ||| |||||||||||||| |||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
24954460 |
aaatgctacaa-acagaaaat-aattcttcgatggagacccctacataagttggccaaagctaaagagatcgaggaaccatcgaatctcgctgtccagac |
24954557 |
T |
|
| Q |
237 |
gacacc |
242 |
Q |
| |
|
|||||| |
|
|
| T |
24954558 |
gacacc |
24954563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 23196429 - 23196294
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaata--aactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaa----gtttcaaaataagctcta |
106 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
23196429 |
atcatacaagagtaattcgaaaagacaaattcaaacatagcatttcat-aaggccaactaatgggcggtttacacaaaaaagacttcaaaatgagctcta |
23196331 |
T |
|
| Q |
107 |
aaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23196330 |
aaagagcgc-aaagtaaaccattacaaaagaaatgcta |
23196294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 23622033 - 23621899
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaata--aactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagt---ttcaaaataagctctaa |
107 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| | |||||| |
|
|
| T |
23622033 |
atcatacaagagtaattcgaaaagacaaattcaaacatagcatttcat-aaggccaactaatgggcggtctacacaaaaagacttcaaaatgaactctaa |
23621935 |
T |
|
| Q |
108 |
aagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23621934 |
aagagcgcaaa-gtaaaccattacaaaagaaatgcta |
23621899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 22642923 - 22643058
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaa--taaactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagt----ttcaaaataagctcta |
106 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||| ||||||| || ||||||||||||| |||||||||||| |||||||| ||||||| |
|
|
| T |
22642923 |
atcatacaagagtaattcgaaaagataaattcaaaaataaaatttcat-aaggccaactaatgggtggtttacacaaaaaagaattcaaaatgagctcta |
22643021 |
T |
|
| Q |
107 |
aaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
22643022 |
aaagagagcaaa-gtaaaccattacaaaagaaatgcta |
22643058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 74033 - 74169
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaa--taaactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagt---ttcaaaataagctctaa |
107 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
74033 |
atcatacaagagtaattcgaaaagataaattcaaacatagcatttcat-aaagccaactaatgggcggtttacacaaaaagacttcaaaatgggctctaa |
74131 |
T |
|
| Q |
108 |
aa-gagcgcaaaagtaaaccattacaaaagaaatgctat |
145 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
74132 |
aaagagcgcaaa-gtaaaccattacaaaagaaatgctat |
74169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 18610 - 18475
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaata--aactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaa----gtttcaaaataagctcta |
106 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
18610 |
atcatacaagagtaattcgaaaagacaaattcaaacatagcatttcat-aaggccaactaatgggcggtttacacaaaagagacttcaaaatgggctcta |
18512 |
T |
|
| Q |
107 |
aaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18511 |
aaagagcgc-aaagtaaaccattacaaaagaaatgcta |
18475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 33230 - 33095
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaata--aactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaa----gtttcaaaataagctcta |
106 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
33230 |
atcatacaagagtaattcgaaaagacaaattcaaacatagcatttcat-aaggccaactaatgggcggtttacacaaaagagacttcaaaatgggctcta |
33132 |
T |
|
| Q |
107 |
aaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33131 |
aaagagcgc-aaagtaaaccattacaaaagaaatgcta |
33095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 14562816 - 14562681
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaata--aactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaa----gtttcaaaataagctcta |
106 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
14562816 |
atcatacaagagtaattcgaaaagacaaattcaaacatagcatttcat-aaggccaactaatgggcggtttacacaaaagagacttcaaaatgggctcta |
14562718 |
T |
|
| Q |
107 |
aaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14562717 |
aaagagcgc-aaagtaaaccattacaaaagaaatgcta |
14562681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 13284915 - 13284815
Alignment:
| Q |
47 |
atagcatttcattaaagccaactaatgggcggtttacac----aaagtttcaaaataagctctaaaagagcgcaaaagtaaaccattacaaaagaaatgc |
142 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||||||| ||| || |||||| ||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
13284915 |
atagcatttcat-aaggccagctaatgggcggtttacacgataaaaattccaaaatgggctct-aaagagcgcaaaagtaaaccattacaaaagggatgc |
13284818 |
T |
|
| Q |
143 |
tat |
145 |
Q |
| |
|
||| |
|
|
| T |
13284817 |
tat |
13284815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 4423 - 4288
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaata--aactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagt---ttcaaaataagctctaa |
107 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
4423 |
atcatacaagagtaattcgaaaagacaaattcaaacatagcatttcat-aaggccaactaatgggcggtttacacaaaaagacttcaaaatgagctctaa |
4325 |
T |
|
| Q |
108 |
aagagcgcaaaagtaaaccattac-aaaagaaatgcta |
144 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
4324 |
aagagcgc-aaagtaaaccattacaaaaagaaatgcta |
4288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 28221 - 28356
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaata--aactcaaacatagcatttcattaaagccaactaatgggcggtttacaca----aagtttcaaaataagctcta |
106 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||||||| || |||||||||||||||||||||||| || ||||||| |||||| |
|
|
| T |
28221 |
atcatacaagagtaattcgaaaagacaaattcaaacatagcatttcat-aaggccaactaatgggcggtttacacaaaagaaacttcaaaacgggctcta |
28319 |
T |
|
| Q |
107 |
aaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28320 |
aaagagcgc-aaagtaaaccattacaaaagaaatgcta |
28356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 128118 - 127983
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaata--aactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagt----ttcaaaataagctcta |
106 |
Q |
| |
|
|||||||||||||||||| |||| | || |||||||||||||||||| || ||||||||||||| |||||||||||| || ||||| ||||||| |
|
|
| T |
128118 |
atcatacaagagtaattccaaaagacaaattcaaacatagcatttcat-aaggccaactaatgggtggtttacacaaacaagacttaaaaatgagctcta |
128020 |
T |
|
| Q |
107 |
aaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
128019 |
aaagagcgcaaa-gtaaaccattacaaaagaaatgcta |
127983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 19030754 - 19030621
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaataaact-caaacatagcatttcattaaagccaactaatgggcggtttacacaa----agtttcaaaataagctctaa |
107 |
Q |
| |
|
|||||||| |||||||||||||| ||| | ||||||||||||||||| || ||||||||||||||||||||||||| | || |||||| ||||| | |
|
|
| T |
19030754 |
atcatacaggagtaattcgaaaagaaagttcaaacatagcatttcat-aaggccaactaatgggcggtttacacaaaaggaattccaaaatgggctct-a |
19030657 |
T |
|
| Q |
108 |
aagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19030656 |
aagagcgc-aaagtaaaccattacaaaagaaatgcta |
19030621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 38538 - 38643
Alignment:
| Q |
41 |
tcaaacatagcatttcattaaagccaactaatgggcggtttacacaaagt----ttcaaaataagctctaaaagagcgcaaaagtaaaccattacaaaag |
136 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38538 |
tcaaacatagcatttcat-aaggccaactaatgggcggtttacacaaaagagacttcaaaatgggctctaaaagagcgcaaa-gtaaaccattacaaaag |
38635 |
T |
|
| Q |
137 |
aaatgcta |
144 |
Q |
| |
|
|||||||| |
|
|
| T |
38636 |
aaatgcta |
38643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 21515172 - 21515306
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaataaact-caaacatagcatttcattaaagccaactaatgggcggtttaca-caaag---tttcaaaataagctctaa |
107 |
Q |
| |
|
||||||| ||||||||||||||| ||| | |||||||||||||||| || |||||||||||||||||||||| |||| |||||||| ||||| | |
|
|
| T |
21515172 |
atcatacgagagtaattcgaaaagaaaattcaaacatagcatttcac-aaggccaactaatgggcggtttacatgaaaggatcttcaaaatgagctcgca |
21515270 |
T |
|
| Q |
108 |
aagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
21515271 |
aggagcgcaaaa-taaaccattacaaaagaaatgcta |
21515306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 21515368 - 21515424
Alignment:
| Q |
184 |
aagttggccaaagccaaagagatcgaggaaccatcgaatttcgctatctagacgaca |
240 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||| || |||||||| |||||||| |
|
|
| T |
21515368 |
aagttggccaaagccaaaaaggtcgagaaaccatcttatctcgctatcgagacgaca |
21515424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 19002 - 19136
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaa--ataaactcaaacatagcatttcattaaagccaactaatgggcggtttacacaaa----gtttcaaaataagctcta |
106 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||| || ||| |
|
|
| T |
19002 |
atcatacaagagtaattcgaaaagacaaattcaaacatagcatttca-taaggccaactaatggacggtttacacaaaagagacttcaaaatgggc-cta |
19099 |
T |
|
| Q |
107 |
aaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
19100 |
aaagagcgc-aaagtagaccatgacaaaagaaatgcta |
19136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 122359 - 122226
Alignment:
| Q |
13 |
atcatacaagagtaattcgaaaa-taaactcaaacatagcatttcattaaagccaactaatgggcggtttaca-caaag---tttcaaaataagctctaa |
107 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||| || ||||| |||| |||||||| |||| | |
|
|
| T |
122359 |
atcatacaagagtaattcgaaaagaaaattcaaacatagcatttca-taaggccaactaatgggtggcttacatgaaaggatcttcaaaatgggctc-ga |
122262 |
T |
|
| Q |
108 |
aagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
122261 |
aagagcgcaaaa-taaaccattacaaacgaaatgcta |
122226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 35622 - 35718
Alignment:
| Q |
48 |
tagcatttcattaaagccaactaatgggcggtttacacaaag---tttcaaaataagctctaaaagagcgcaaaagtaaaccattacaaaagaaatgcta |
144 |
Q |
| |
|
||||||||||| || ||||||||||||||| | |||| |||| || |||||| |||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
35622 |
tagcatttcat-aaggccaactaatgggcgttgtacaaaaaggaattccaaaatgggctctaaa-gagcgcaaaa-taaaccattacaaaagaaatgcta |
35718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 8758 - 8826
Alignment:
| Q |
19 |
caagagtaattcgaaaataaactcaaacatagcatttcat---taaagccaactaatgggcggtttaca |
84 |
Q |
| |
|
||||||| ||||||||| ||| | |||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
8758 |
caagagtgattcgaaaagaaatttaaacatagcatttcatacagaaggccaactaatgggcggtttaca |
8826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 23626 - 23694
Alignment:
| Q |
19 |
caagagtaattcgaaaataaactcaaacatagcatttcat---taaagccaactaatgggcggtttaca |
84 |
Q |
| |
|
||||||| ||||||||| ||| | |||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
23626 |
caagagtgattcgaaaagaaatttaaacatagcatttcatacaaaaggccaactaatgggcggtttaca |
23694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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