View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_166 (Length: 241)

Name: NF8901_low_166
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_166
NF8901_low_166
[»] chr3 (26 HSPs)
chr3 (1-234)||(36445819-36446051)
chr3 (39-98)||(1217779-1217838)
chr3 (39-151)||(37273166-37273278)
chr3 (38-81)||(42745069-42745112)
chr3 (39-87)||(5391911-5391959)
chr3 (39-79)||(33883748-33883788)
chr3 (38-81)||(3044255-3044298)
chr3 (38-81)||(25925773-25925816)
chr3 (39-82)||(39602205-39602248)
chr3 (39-82)||(52440657-52440700)
chr3 (41-79)||(5166357-5166395)
chr3 (40-82)||(23808059-23808101)
chr3 (114-152)||(25699123-25699161)
chr3 (38-80)||(45432936-45432978)
chr3 (39-88)||(5396229-5396278)
chr3 (38-99)||(29771869-29771930)
chr3 (38-79)||(34954113-34954154)
chr3 (38-87)||(36101599-36101648)
chr3 (38-87)||(36139909-36139958)
chr3 (38-135)||(43115087-43115184)
chr3 (107-144)||(44237517-44237554)
chr3 (38-98)||(3015822-3015882)
chr3 (38-82)||(24785236-24785280)
chr3 (46-150)||(27294385-27294489)
chr3 (46-134)||(36646325-36646413)
chr3 (39-87)||(39723230-39723278)
[»] chr8 (16 HSPs)
chr8 (40-144)||(30191074-30191178)
chr8 (43-99)||(11569435-11569491)
chr8 (38-86)||(20672781-20672829)
chr8 (40-79)||(4281579-4281618)
chr8 (39-98)||(9835879-9835938)
chr8 (45-81)||(779057-779093)
chr8 (39-78)||(30389131-30389170)
chr8 (67-173)||(2487912-2488018)
chr8 (39-81)||(2594993-2595035)
chr8 (38-80)||(3600735-3600777)
chr8 (39-101)||(11118973-11119035)
chr8 (38-80)||(14339602-14339644)
chr8 (38-120)||(41606860-41606942)
chr8 (20-81)||(3161619-3161680)
chr8 (38-99)||(5069728-5069789)
chr8 (46-94)||(3254264-3254312)
[»] chr5 (7 HSPs)
chr5 (39-98)||(41957430-41957489)
chr5 (38-150)||(17258810-17258922)
chr5 (21-99)||(13604827-13604905)
chr5 (38-144)||(40534230-40534336)
chr5 (40-81)||(25461312-25461353)
chr5 (38-104)||(8177505-8177571)
chr5 (38-83)||(36639553-36639598)
[»] chr1 (25 HSPs)
chr1 (48-147)||(32515371-32515470)
chr1 (38-144)||(10199341-10199447)
chr1 (38-80)||(25479612-25479654)
chr1 (38-140)||(27140509-27140611)
chr1 (38-99)||(28689430-28689491)
chr1 (38-101)||(38170666-38170729)
chr1 (40-81)||(1509961-1510002)
chr1 (38-87)||(6292524-6292573)
chr1 (39-83)||(5886988-5887032)
chr1 (38-149)||(31517668-31517779)
chr1 (39-82)||(34290268-34290311)
chr1 (38-81)||(37593680-37593723)
chr1 (38-81)||(46252678-46252721)
chr1 (40-154)||(4768752-4768866)
chr1 (39-81)||(31118075-31118117)
chr1 (38-80)||(47877140-47877182)
chr1 (39-144)||(3224455-3224560)
chr1 (40-81)||(28910023-28910064)
chr1 (39-100)||(30815630-30815691)
chr1 (39-99)||(38503442-38503503)
chr1 (39-87)||(10744333-10744381)
chr1 (38-98)||(11639395-11639455)
chr1 (54-118)||(26179518-26179582)
chr1 (38-94)||(33723365-33723421)
chr1 (110-150)||(34668759-34668799)
[»] chr7 (13 HSPs)
chr7 (38-120)||(20553134-20553216)
chr7 (96-144)||(19624266-19624314)
chr7 (46-144)||(33894666-33894764)
chr7 (42-99)||(5276266-5276323)
chr7 (38-80)||(7244711-7244753)
chr7 (46-144)||(28727696-28727794)
chr7 (38-80)||(29286822-29286864)
chr7 (47-104)||(6857312-6857369)
chr7 (46-99)||(36598334-36598387)
chr7 (38-99)||(46082067-46082128)
chr7 (38-82)||(8094301-8094345)
chr7 (39-87)||(43219634-43219682)
chr7 (46-142)||(45078317-45078413)
[»] chr4 (13 HSPs)
chr4 (38-144)||(47970327-47970433)
chr4 (46-135)||(28232584-28232673)
chr4 (46-98)||(23819128-23819180)
chr4 (110-144)||(32071966-32072000)
chr4 (39-81)||(49032046-49032088)
chr4 (41-78)||(24747353-24747390)
chr4 (38-79)||(28300297-28300338)
chr4 (43-100)||(43932471-43932528)
chr4 (39-87)||(825480-825528)
chr4 (38-150)||(22236032-22236144)
chr4 (46-101)||(29263409-29263465)
chr4 (38-82)||(43824314-43824358)
chr4 (37-89)||(52746828-52746880)
[»] chr6 (14 HSPs)
chr6 (40-144)||(34939777-34939881)
chr6 (38-82)||(6647418-6647462)
chr6 (38-98)||(9027609-9027669)
chr6 (39-99)||(21024243-21024303)
chr6 (38-81)||(3528834-3528877)
chr6 (38-81)||(6536978-6537021)
chr6 (40-87)||(31624123-31624170)
chr6 (38-144)||(8420130-8420236)
chr6 (38-144)||(33887861-33887967)
chr6 (39-87)||(696634-696682)
chr6 (41-101)||(821833-821893)
chr6 (38-82)||(13908494-13908538)
chr6 (72-144)||(27857423-27857495)
chr6 (38-98)||(28641728-28641788)
[»] chr2 (18 HSPs)
chr2 (38-81)||(1056125-1056168)
chr2 (38-101)||(15120214-15120277)
chr2 (43-144)||(5759508-5759609)
chr2 (38-100)||(35378993-35379055)
chr2 (39-144)||(8017466-8017571)
chr2 (38-81)||(14666579-14666622)
chr2 (110-144)||(7103406-7103440)
chr2 (38-132)||(10567088-10567182)
chr2 (38-87)||(12313163-12313212)
chr2 (107-144)||(40944013-40944050)
chr2 (38-98)||(11063519-11063579)
chr2 (38-82)||(12147488-12147532)
chr2 (39-87)||(29316765-29316813)
chr2 (41-101)||(33256774-33256834)
chr2 (55-99)||(37766847-37766891)
chr2 (38-150)||(40158749-40158861)
chr2 (39-82)||(40682389-40682433)
chr2 (38-98)||(41809224-41809284)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 36445819 - 36446051
Alignment:
Q  1 ttcaaactggtccataagctataaattatctagaatggcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445819 ttcaaactggtccataagctataaattatctagaatggcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcc 36445918  T
Q  101 cgaagtgtttcacaagtgctcatgtcaatagataaactcaaatatgccaacccatacaagctcttagttttgtgaaacaacttggattgcatattttttg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445919 c-aagtgtttcacaagtgctcatgtcaatagataaactcaaatatgccaacccatacaagctcttagttttgtgaaacaacttggattgcatattttttg 36446017  T
Q  201 tattgtgtgttgtggtaattcaaaatgatgatgt 234  Q
    ||||||||||||||||||||||||||||||||||    
T  36446018 tattgtgtgttgtggtaattcaaaatgatgatgt 36446051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 1217838 - 1217779
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  1217838 cttatgaaagtaagatgaaaacaacttatggacatgtcataagctgtttccgtaagctct 1217779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 37273166 - 37273278
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaact 138  Q
    |||||| ||||||| ||||||||||| ||| ||||||||||||  |||||| ||||||||||| ||  || |||| |||||| |||  |||| ||||  |    
T  37273166 cttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgctaataaataagtt 37273265  T
Q  139 caaatatgccaac 151  Q
    |||||| ||||||    
T  37273266 caaataagccaac 37273278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 42745069 - 42745112
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||    
T  42745069 gcttatggaaataagatgaaaacaacttatgaacatgtcataag 42745112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 5391911 - 5391959
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    |||||||||||||| |||||||| || ||||||||||||||||| ||||    
T  5391911 cttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttt 5391959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 33883788 - 33883748
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcata 79  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  33883788 cttatgaaaataagctgaaaacaacttatgaacatgtcata 33883748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 3044298 - 3044255
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||||||| |||||||| || ||||||||||||||||    
T  3044298 gcttatgaaaataagttgaaaacagcttatgaacatgtcataag 3044255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 25925773 - 25925816
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||||||| |||||||| || ||||||||||||||||    
T  25925773 gcttatgaaaataagttgaaaacagcttatgaacatgtcataag 25925816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 39602248 - 39602205
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    |||||||||||||| ||||||||| | |||||||||||||||||    
T  39602248 cttatgaaaataagttgaaaacaatttatgaacatgtcataagc 39602205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 52440700 - 52440657
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    ||||||||||| || ||||||||||| |||||||||||||||||    
T  52440700 cttatgaaaattagttgaaaacaacttatgaacatgtcataagc 52440657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 5166357 - 5166395
Alignment:
Q  41 tatgaaaataagatgaaaacaactaatgaacatgtcata 79  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  5166357 tatgaaaataagatgaaaacagcttatgaacatgtcata 5166395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 23808101 - 23808059
Alignment:
Q  40 ttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    ||||||||||||||||||||||| |  ||||||||||||||||    
T  23808101 ttatgaaaataagatgaaaacaatttgtgaacatgtcataagc 23808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 25699161 - 25699123
Alignment:
Q  114 aagtgctcatgtcaatagataaactcaaatatgccaacc 152  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  25699161 aagtgcttatgtcaatagataaactcaaataagccaacc 25699123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 45432978 - 45432936
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataa 80  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||    
T  45432978 gcttatggaaataagctgaaaacaacttatgaacatgtcataa 45432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 5396229 - 5396278
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttc 88  Q
    |||||||||||||| |||||||| || || |||||||||||||| |||||    
T  5396229 cttatgaaaataagctgaaaacaccttattaacatgtcataagctgtttc 5396278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 29771869 - 29771930
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    ||||||| ||||||| ||||||||||| ||| ||||||| ||||  ||||| ||||||||||    
T  29771869 gcttatggaaataagttgaaaacaacttatggacatgtcctaagttgtttctttaagctctc 29771930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 34954113 - 34954154
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcata 79  Q
    ||||||||||||||| |||||||| || ||||||||||||||    
T  34954113 gcttatgaaaataagctgaaaacagctcatgaacatgtcata 34954154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 36101599 - 36101648
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    ||||||||||||||| |||||||| ||  |||||||||||||||| ||||    
T  36101599 gcttatgaaaataagctgaaaacagcttgtgaacatgtcataagctgttt 36101648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 36139909 - 36139958
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    ||||||||||||||| |||||||| ||  |||||||||||||||| ||||    
T  36139909 gcttatgaaaataagctgaaaacagcttgtgaacatgtcataagctgttt 36139958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 43115087 - 43115184
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataa 135  Q
    ||||||| ||||||| ||||||||| | ||| ||||||||||||  |||||| ||| |||| || ||   | ||||||||| | ||||||||||||||    
T  43115087 gcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagataa 43115184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 44237517 - 44237554
Alignment:
Q  107 gtttcacaagtgctcatgtcaatagataaactcaaata 144  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  44237517 gtttcacaagtgcttatgtcagtagataaactcaaata 44237554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 3015882 - 3015822
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    |||||| ||||||||||||||||| || ||| ||||||||||||  |||| | ||||||||    
T  3015882 gcttattaaaataagatgaaaacatcttatggacatgtcataagttgttttcataagctct 3015822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 24785236 - 24785280
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    ||||||| ||||||| | ||||||||| |||||||||||||||||    
T  24785236 gcttatgtaaataagctaaaaacaacttatgaacatgtcataagc 24785280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 27294385 - 27294489
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactcaaatat 145  Q
    |||||||||||||||| || |||| ||| |||| ||  |||||  | ||||||| | ||  || ||||||||||| ||| |||||||||||||||| ||     
T  27294385 aaataagatgaaaacagcttatgagcatatcatgagttgtttctatgagctctctcaaacagtctcacaagtgcttatgacaatagataaactcaagtaa 27294484  T
Q  146 gccaa 150  Q
    |||||    
T  27294485 gccaa 27294489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 36646413 - 36646325
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagata 134  Q
    |||||||||||||||| || ||| ||||| ||||||  |||||| ||||||||||| ||  || | ||||||||  ||| |||||||||    
T  36646413 aaataagatgaaaacagcttatggacatgccataagtggtttccataagctctcccaaatagtcttacaagtgcctatgccaatagata 36646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 39723278 - 39723230
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    ||||||| |||||| |||||||| || ||||||||||||||||| ||||    
T  39723278 cttatgagaataagctgaaaacagcttatgaacatgtcataagctgttt 39723230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 30191178 - 30191074
Alignment:
Q  40 ttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactc 139  Q
    ||||| ||||||| ||||||||| |  |||||||||||||||  |||||| ||||||||||| ||  || | ||||||||| ||| ||||||||||||||    
T  30191178 ttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactc 30191079  T
Q  140 aaata 144  Q
    |||||    
T  30191078 aaata 30191074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 11569491 - 11569435
Alignment:
Q  43 tgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    |||||||||| ||||||||||| ||| ||||||||||||| |||||| |||||||||    
T  11569491 tgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctc 11569435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 20672781 - 20672829
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtt 86  Q
    ||||||||||||||| |||||||| || |||||||||||||||||||||    
T  20672781 gcttatgaaaataagctgaaaacagcttatgaacatgtcataagcagtt 20672829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 4281579 - 4281618
Alignment:
Q  40 ttatgaaaataagatgaaaacaactaatgaacatgtcata 79  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  4281579 ttatgaaaataagatgaaaacaacttatgaacatgtcata 4281618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 9835938 - 9835879
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    |||||| |||||||||||||||| || ||||||||||||||||| |||| | ||||||||    
T  9835938 cttatggaaataagatgaaaacagcttatgaacatgtcataagctgtttacataagctct 9835879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 779093 - 779057
Alignment:
Q  45 aaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    |||||||||||||||||||| ||||||||||||||||    
T  779093 aaaataagatgaaaacaacttatgaacatgtcataag 779057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 30389131 - 30389170
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcat 78  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  30389131 cttatgaaaataagctgaaaacaacttatgaacatgtcat 30389170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 2488018 - 2487912
Alignment:
Q  67 tgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactcaaatatgccaacccatacaagctctta 166  Q
    ||||||||| |||||  |||| | |||| |||||| ||  || ||||||||||| |||||| ||||| |||||||||| ||||| ||| ||| || ||||    
T  2488018 tgaacatgttataagttgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaacatgccctta 2487919  T
Q  167 gttttgt 173  Q
    | |||||    
T  2487918 gatttgt 2487912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 2595035 - 2594993
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||    
T  2595035 cttatgagaataagctgaaaacaacttatgaacatgtcataag 2594993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 3600777 - 3600735
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataa 80  Q
    ||||||||||||||| ||||||||||| ||| |||||||||||    
T  3600777 gcttatgaaaataagttgaaaacaacttatggacatgtcataa 3600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 11119035 - 11118973
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctccc 101  Q
    ||||| |||||| | |||||||| || |||||||||||||||| ||| ||| |||||||||||    
T  11119035 cttataaaaatatgctgaaaacagcttatgaacatgtcataagtagtctccataagctctccc 11118973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 14339644 - 14339602
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataa 80  Q
    ||||||||||||||| ||||||||||| ||| |||||||||||    
T  14339644 gcttatgaaaataagttgaaaacaacttatggacatgtcataa 14339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 41606942 - 41606860
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgct 120  Q
    ||||||| ||||||| |||||||||||  |||||||||||||||| |||| | ||   |||||| || |||||||||| ||||    
T  41606942 gcttatggaaataagctgaaaacaacttttgaacatgtcataagctgttttcgtagtttctcccaaactgtttcacaaatgct 41606860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 3161680 - 3161619
Alignment:
Q  20 tataaattatctagaatggcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    |||| |||||||  |||||||||| |||||||| ||||||||  | ||||||||||||||||    
T  3161680 tatatattatcttcaatggcttataaaaataagctgaaaacattttatgaacatgtcataag 3161619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 5069728 - 5069789
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    ||||||||||||||| ||||||  ||| |||||||||| |||||  |||||| |||||||||    
T  5069728 gcttatgaaaataagctgaaaatgacttatgaacatgttataagatgtttccataagctctc 5069789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 3254264 - 3254312
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttccttaag 94  Q
    ||||||| |||||||| || ||||||||||||||||| |||| ||||||    
T  3254264 aaataagctgaaaacagcttatgaacatgtcataagctgttttcttaag 3254312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 41957489 - 41957430
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  41957489 cttatgaaaataagatgaaaacaacttatggacatgtcataagctgtttccgtaagctct 41957430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 17258922 - 17258810
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    ||||||||||||||| |||||||| || |||||||||||||||||  ||| | || | |||||| |||  | ||||||||||| |||| | | ||||| |    
T  17258922 gcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcataggttctcccaaagaatgtcacaagtgcttatgttagttgataagc 17258823  T
Q  138 tcaaatatgccaa 150  Q
    ||||||| |||||    
T  17258822 tcaaataagccaa 17258810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 13604905 - 13604827
Alignment:
Q  21 ataaattatctagaatggcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    |||| |||||| |||  ||||||||||||||| ||||||||||  ||| ||||||||||||| |||| | |||||||||    
T  13604905 ataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctc 13604827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 40534230 - 40534336
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    ||||||| || |||||||||||| | | |||||||||||||||||   |||| ||||||||||  ||  || ||||||||| | |||||| || ||||||    
T  40534230 gcttatggaagtaagatgaaaactaattatgaacatgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaac 40534329  T
Q  138 tcaaata 144  Q
    |||||||    
T  40534330 tcaaata 40534336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 25461353 - 25461312
Alignment:
Q  40 ttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  25461353 ttatgaaaataagctgaaaacagctaatgaacatgtcataag 25461312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 8177571 - 8177505
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaa 104  Q
    ||||||||||||||  ||||||||||| ||| |||| |||||||| |||||| | |||||| |||||    
T  8177571 gcttatgaaaataacctgaaaacaacttatggacatatcataagctgtttccatgagctcttccgaa 8177505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 36639553 - 36639598
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagca 83  Q
    |||||||||||||||| |||||||||| ||| ||| ||||||||||    
T  36639553 gcttatgaaaataagaggaaaacaacttatggacacgtcataagca 36639598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 147
Target Start/End: Complemental strand, 32515470 - 32515371
Alignment:
Q  48 ataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactcaaatatgc 147  Q
    ||||| ||||||||||| ||  |||||||||| || |||||| ||||||||||| ||  || ||||||||||| |||| | |||||||||||||||||||    
T  32515470 ataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaatatgc 32515371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 10199447 - 10199341
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||  ||| | | || |||||| ||  || ||||||||||| |||| | ||||||| |    
T  10199447 gcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagc 10199348  T
Q  138 tcaaata 144  Q
    |||||||    
T  10199347 tcaaata 10199341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 25479612 - 25479654
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataa 80  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  25479612 gcttatgaaaataagctgaaaacaactaatgaacatgtcataa 25479654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 27140509 - 27140611
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    ||||||| ||||||| ||||||||||| ||| ||||||||||||| |||||||||| ||||| | ||| |  | |||| || | |||||||||||||| |    
T  27140509 gcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactctctcaaagagacttacaattgtttatgtcaatagataagc 27140608  T
Q  138 tca 140  Q
    |||    
T  27140609 tca 27140611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 28689491 - 28689430
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||| |||||| |||| ||||    
T  28689491 gcttatgaaaataagctgaaaacaacttatggacatgtcataagctgtttccgtaagttctc 28689430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 38170729 - 38170666
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctccc 101  Q
    ||||| ||||| ||| ||||||||||| ||||||||||||||||| |||| | |||||||||||    
T  38170729 gcttaggaaaacaagctgaaaacaacttatgaacatgtcataagctgttttcataagctctccc 38170666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 1510002 - 1509961
Alignment:
Q  40 ttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  1510002 ttatgaaaataagctgaaaacagctaatgaacatgtcataag 1509961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 6292524 - 6292573
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    ||||||||||||||| |||||||| || ||||||||||||||||| ||||    
T  6292524 gcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgttt 6292573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 5887032 - 5886988
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagca 83  Q
    |||| ||||||||| ||||||||||| ||||||||||||||||||    
T  5887032 cttacgaaaataagctgaaaacaacttatgaacatgtcataagca 5886988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 31517779 - 31517668
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    ||||||||||||||| |||||||| || ||||||||||||| ||  ||||   |||| |||||| ||  || ||||||||||| ||| || || |||| |    
T  31517779 gcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaataagc 31517680  T
Q  138 tcaaatatgcca 149  Q
    ||||||| ||||    
T  31517679 tcaaataagcca 31517668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 34290268 - 34290311
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||    
T  34290268 cttatgaaaataagctgaaaacaacttatgaatatgtcataagc 34290311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 37593723 - 37593680
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||||||| |||||||| || ||||||||||||||||    
T  37593723 gcttatgaaaataagctgaaaacagcttatgaacatgtcataag 37593680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 46252721 - 46252678
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||    
T  46252721 gcttatgaaaataacctgaaaacaacttatgaacatgtcataag 46252678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 4768866 - 4768752
Alignment:
Q  40 ttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactc 139  Q
    ||||| ||||||| ||||||||| | ||| ||||||| ||||| |||| | |||| | |||| || ||| ||||||||| | ||| || | |||||||||    
T  4768866 ttatggaaataagctgaaaacaagttatggacatgtcgtaagctgttttcgtaagttttcccaaactgtctcacaagtgtttatgccagttgataaactc 4768767  T
Q  140 aaatatgccaaccca 154  Q
    |||| ||| ||||||    
T  4768766 aaatgtgcaaaccca 4768752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 31118075 - 31118117
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||    
T  31118075 cttatggaaataagctgaaaacaactgatgaacatgtcataag 31118117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 47877140 - 47877182
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataa 80  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||    
T  47877140 gcttatgaaaataagctgaaaacaacttatgagcatgtcataa 47877182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 3224455 - 3224560
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaact 138  Q
    |||||||||||||| ||| ||||||| ||| |||||||||||| |||||   |||  |||| | ||  || ||||||||||| |||||  || |||||||    
T  3224455 cttatgaaaataagctgagaacaacttatggacatgtcataagtagtttgtataaattctctcaaatagtgtcacaagtgcttatgtcggtaaataaact 3224554  T
Q  139 caaata 144  Q
    ||||||    
T  3224555 caaata 3224560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 28910023 - 28910064
Alignment:
Q  40 ttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||||||||||||||||| || |||| ||||||||    
T  28910023 ttatgaaaataagatgaaaacaacttataaacaagtcataag 28910064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 30815691 - 30815630
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcc 100  Q
    |||||||||||||| ||||||||  | ||||||||||||||||| ||||   ||||||||||    
T  30815691 cttatgaaaataagctgaaaacattttatgaacatgtcataagctgtttatataagctctcc 30815630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 38503503 - 38503442
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaac-atgtcataagcagtttccttaagctctc 99  Q
    |||||||||||||| ||||||||||| |||||| |||||||| || |||||| |||| ||||    
T  38503503 cttatgaaaataagctgaaaacaacttatgaacaatgtcataggctgtttccataagttctc 38503442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 10744333 - 10744381
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    ||||| ||||||||||||||||| || ||||||||| ||||||| ||||    
T  10744333 cttataaaaataagatgaaaacagcttatgaacatgccataagctgttt 10744381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 11639455 - 11639395
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    ||||||||||||||| | |||||| || ||| ||||||||||||| |||| | ||||||||    
T  11639455 gcttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagctct 11639395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 26179518 - 26179582
Alignment:
Q  54 tgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtg 118  Q
    ||||||||||| ||| ||||||||||||  |||||||||| ||||||| ||  || |||||||||    
T  26179518 tgaaaacaactcatgcacatgtcataagttgtttccttaaactctccctaacagtctcacaagtg 26179582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 33723421 - 33723365
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaag 94  Q
    ||||||| ||||||| |||||||| || ||||||||||||| ||| |||||| ||||    
T  33723421 gcttatggaaataagctgaaaacatctcatgaacatgtcatgagctgtttccataag 33723365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 34668759 - 34668799
Alignment:
Q  110 tcacaagtgctcatgtcaatagataaactcaaatatgccaa 150  Q
    |||||||||||||||||| || ||||||||||||| |||||    
T  34668759 tcacaagtgctcatgtcagtacataaactcaaataagccaa 34668799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 20553134 - 20553216
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgct 120  Q
    ||||||| ||||||  ||||||||||| ||||||||||| ||||| |||||| |||||||||| |||  || |||||||||||    
T  20553134 gcttatggaaataatctgaaaacaacttatgaacatgtcgtaagctgtttccataagctctcctgaacagtctcacaagtgct 20553216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 19624266 - 19624314
Alignment:
Q  96 tctcccgaagtgtttcacaagtgctcatgtcaatagataaactcaaata 144  Q
    |||||||||  |||||||||||||| |||||||||||||||||||||||    
T  19624266 tctcccgaacagtttcacaagtgcttatgtcaatagataaactcaaata 19624314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 33894666 - 33894764
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactcaaata 144  Q
    ||||||| ||||||||||| ||| |||||||||| || |||| | ||||||||| | ||  || ||||||||||| |||||| | ||||| ||||||||    
T  33894666 aaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctcaaata 33894764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 5276266 - 5276323
Alignment:
Q  42 atgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    ||||||||||| ||||||||||||||||| ||||||||||  |||| | |||||||||    
T  5276266 atgaaaataaggtgaaaacaactaatgaagatgtcataagatgtttgcataagctctc 5276323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 7244711 - 7244753
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataa 80  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||    
T  7244711 gcttatgaaaataagctgaaaacaacttatgagcatgtcataa 7244753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 28727794 - 28727696
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactcaaata 144  Q
    ||||||| ||||||||||  | ||||||||||||||| |||||| ||||||||| | ||  || || ||||| || | ||||| |||||| ||||||||    
T  28727794 aaataagctgaaaacaacatacgaacatgtcataagccgtttccataagctctctcaaacagtctcgcaagttcttaggtcaaaagataagctcaaata 28727696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 29286822 - 29286864
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataa 80  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||    
T  29286822 gcttatgtaaataagctgaaaacaactgatgaacatgtcataa 29286864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 6857369 - 6857312
Alignment:
Q  47 aataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaa 104  Q
    |||||| ||||||||||| ||| ||||| ||||||| |||||| ||||||||| ||||    
T  6857369 aataagttgaaaacaacttatggacatggcataagctgtttccataagctctctcgaa 6857312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 36598387 - 36598334
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    ||||||| |||||||| || ||||||||||||||||  |||||| |||||||||    
T  36598387 aaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctc 36598334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 46082067 - 46082128
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    ||||||||||||||| ||||||||||| |||  |||||||||||  |||| | |||||||||    
T  46082067 gcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctc 46082128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 8094301 - 8094345
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    ||||||| || |||||| |||||| ||||||||||||||||||||    
T  8094301 gcttatggaagtaagataaaaacagctaatgaacatgtcataagc 8094345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 43219682 - 43219634
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    ||||||| |||||| |||||||| || ||||||||||||||||| ||||    
T  43219682 cttatgagaataagctgaaaacagcttatgaacatgtcataagctgttt 43219634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 45078317 - 45078413
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactcaaa 142  Q
    ||||||| |||||||| || ||| ||||||||||||   ||||  |||| ||||| ||| |||  |||||||||| || ||| ||||||||||||||    
T  45078317 aaataagttgaaaacagcttatggacatgtcataagttatttctataagttctcctgaactgtcacacaagtgcttatatcagtagataaactcaaa 45078413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 47970327 - 47970433
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    ||||||| ||||||| ||||||||| | ||| | |||||| ||| ||||||| |||||| |||  ||  |||||||||||||| |||||| ||||||| |    
T  47970327 gcttatgcaaataagctgaaaacaatttatggaaatgtcacaagtagtttccataagctttccataacagtttcacaagtgcttatgtcagtagataagc 47970426  T
Q  138 tcaaata 144  Q
    |||||||    
T  47970427 tcaaata 47970433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 28232584 - 28232673
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataa 135  Q
    ||||||||||||||||||| || || | ||||||||  ||||||  ||||||| || ||  || || |||||||||||||||||||||||    
T  28232584 aaataagatgaaaacaacttataaataagtcataagttgtttccacaagctcttccaaacagtctcgcaagtgctcatgtcaatagataa 28232673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 23819128 - 23819180
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    ||||||||||||||||||| ||| ||||||||||||| |||| ||||| ||||    
T  23819128 aaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactct 23819180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 32071966 - 32072000
Alignment:
Q  110 tcacaagtgctcatgtcaatagataaactcaaata 144  Q
    ||||||||||| |||||||||||||||||||||||    
T  32071966 tcacaagtgcttatgtcaatagataaactcaaata 32072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 49032088 - 49032046
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||    
T  49032088 cttatggaaataagatgaaaacaaataatggacatgtcataag 49032046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 24747353 - 24747390
Alignment:
Q  41 tatgaaaataagatgaaaacaactaatgaacatgtcat 78  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  24747353 tatgaaaataagctgaaaacaacttatgaacatgtcat 24747390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 28300338 - 28300297
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcata 79  Q
    ||||||||||||||| ||||||||||| | ||||||||||||    
T  28300338 gcttatgaaaataagttgaaaacaacttaagaacatgtcata 28300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 43932471 - 43932528
Alignment:
Q  43 tgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcc 100  Q
    |||||||||||||||||||||| ||| ||||||||| ||| | |||| ||| ||||||    
T  43932471 tgaaaataagatgaaaacaacttatggacatgtcatgagctgcttccgtaaactctcc 43932528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 825528 - 825480
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    |||||||||||||| ||||||||  |||||| ||||||||||| |||||    
T  825528 cttatgaaaataagctgaaaacagttaatgagcatgtcataagtagttt 825480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 22236144 - 22236032
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    |||||||||||||||  ||||||| || |||||||||||| |||| ||||   || |||||||| ||  ||||| |||||| | |||| | || || |||    
T  22236144 gcttatgaaaataagcagaaaacagctcatgaacatgtcacaagctgttttaataggctctcccaaacagtttcgcaagtggttatgttagtaaatgaac 22236045  T
Q  138 tcaaatatgccaa 150  Q
    ||||||| |||||    
T  22236044 tcaaataagccaa 22236032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 29263409 - 29263465
Alignment:
Q  46 aaataagatgaaaacaactaatgaacatgtcataagcagtttc-cttaagctctccc 101  Q
    ||||||| ||||||||||| |||||||| |||||||| |||||  ||||||||||||    
T  29263409 aaataagctgaaaacaacttatgaacatatcataagctgtttcaattaagctctccc 29263465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 43824314 - 43824358
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    ||||||| ||||||| ||||||||||| ||||||||| |||||||    
T  43824314 gcttatggaaataagctgaaaacaacttatgaacatgccataagc 43824358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 52746880 - 52746828
Alignment:
Q  37 ggcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttcc 89  Q
    ||||||||||||| || |||||||| || ||||||||||| ||||| ||||||    
T  52746880 ggcttatgaaaatcagctgaaaacagcttatgaacatgtcttaagctgtttcc 52746828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 34939777 - 34939881
Alignment:
Q  40 ttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactc 139  Q
    ||||| ||||||| ||||||||| | ||| ||||||||||||| |||||| ||||||||||  ||  ||||||||| || | |||||| ||||||| ||     
T  34939777 ttatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctccaaaacagtttcacaaatgtttatgtcactagataagctg 34939876  T
Q  140 aaata 144  Q
    |||||    
T  34939877 aaata 34939881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 6647418 - 6647462
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    ||||||||||||||| |||||||| || |||||||||||||||||    
T  6647418 gcttatgaaaataagttgaaaacatcttatgaacatgtcataagc 6647462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 9027609 - 9027669
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    ||||||||||||||| ||||||||||| ||| ||||||||||||   ||||| ||||||||    
T  9027609 gcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctct 9027669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 21024243 - 21024303
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    |||||||||||||| ||||||||||  ||||| ||||||||||| |||||| |||| ||||    
T  21024243 cttatgaaaataagttgaaaacaacatatgaatatgtcataagcggtttccgtaagttctc 21024303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 3528834 - 3528877
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||    
T  3528834 gcttatgaaaataagatgaaaacaagttatggacatgtcataag 3528877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 6536978 - 6537021
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||    
T  6536978 gcttatggaaataagctgaaaacaacttatgaacatgtcataag 6537021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 31624123 - 31624170
Alignment:
Q  40 ttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    ||||||||||||| |||||||| || ||||||||||||||||| ||||    
T  31624123 ttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttt 31624170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 8420236 - 8420130
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    ||||||| ||||||| |||||| | ||  || |||||||||||||  ||||  ||||||||| | ||  || ||||||||| | |||||||||||||| |    
T  8420236 gcttatggaaataagttgaaaatagcttgtggacatgtcataagctatttctataagctctcactaacagtctcacaagtgtttatgtcaatagataagc 8420137  T
Q  138 tcaaata 144  Q
    |||||||    
T  8420136 tcaaata 8420130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 33887861 - 33887967
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    ||||||| ||||||| |||||||||||  ||||||||||||||||  ||| | |||  |||| | ||   | ||||||||||| |||||| || ||||||    
T  33887861 gcttatggaaataagttgaaaacaacttgtgaacatgtcataagctattttcataaattctctcaaacaatgtcacaagtgctaatgtcagtaaataaac 33887960  T
Q  138 tcaaata 144  Q
    |||||||    
T  33887961 tcaaata 33887967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 696634 - 696682
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    ||||||| |||||| |||||||| || ||||||||||||||||| ||||    
T  696634 cttatgagaataagctgaaaacagcttatgaacatgtcataagctgttt 696682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 821833 - 821893
Alignment:
Q  41 tatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctccc 101  Q
    |||||||||||| |||||||| || ||||||||||||||| |  || || |||||||||||    
T  821833 tatgaaaataagctgaaaacagcttatgaacatgtcataacctattcccataagctctccc 821893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 13908494 - 13908538
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    ||||||||||||||| |||||||| || | |||||||||||||||    
T  13908494 gcttatgaaaataagctgaaaacagcttacgaacatgtcataagc 13908538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 27857423 - 27857495
Alignment:
Q  72 atgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactcaaata 144  Q
    ||||||||||  |||| | ||||||||||| ||  ||||||||||||   |||||| ||||||||||||||||    
T  27857423 atgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaata 27857495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 28641788 - 28641728
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    ||||||||||||||| | |||||| || |||||||||| |||||| |||| | ||||||||    
T  28641788 gcttatgaaaataagctaaaaacagcttatgaacatgttataagctgttttcataagctct 28641728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 1056168 - 1056125
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||    
T  1056168 gcttatgaaaacaagctgaaaacaactaatgaacatgtcataag 1056125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 15120214 - 15120277
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctccc 101  Q
    |||||| |||||||| | |||||| |||||||||||||||||||  |||||| |||||||||||    
T  15120214 gcttatcaaaataagcttaaaacagctaatgaacatgtcataagttgtttccataagctctccc 15120277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 5759609 - 5759508
Alignment:
Q  43 tgaaaataagatgaaa-acaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaactcaa 141  Q
    |||||||||| ||||| |||||| ||| ||||||| ||||| |||||| ||||||||||| ||  || |||||||| || ||  ||||||||||||||||    
T  5759609 tgaaaataagctgaaacacaacttatggacatgtc-taagctgtttccataagctctcccaaacagtctcacaagtacttataccaatagataaactcaa 5759511  T
Q  142 ata 144  Q
    |||    
T  5759510 ata 5759508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 35379055 - 35378993
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcc 100  Q
    ||||||||||||||| ||||||||||| ||||||| ||||| ||| |||| | ||||||||||    
T  35379055 gcttatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataagctctcc 35378993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 8017466 - 8017571
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaact 138  Q
    |||||||||||| |  |||||||| | |||||||| |||||||| |||| | |||| |||||| ||   |  |||||||||| |||||||||||||| ||    
T  8017466 cttatgaaaatacgcagaaaacaaattatgaacatatcataagctgttttcataagttctcccaaataatcgcacaagtgcttatgtcaatagataacct 8017565  T
Q  139 caaata 144  Q
    ||||||    
T  8017566 caaata 8017571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 14666579 - 14666622
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataag 81  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||    
T  14666579 gcttatgaaaataaggtgaaaacaacctatgaacatgtcataag 14666622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 7103440 - 7103406
Alignment:
Q  110 tcacaagtgctcatgtcaatagataaactcaaata 144  Q
    ||||| |||||||||||||||||||||||||||||    
T  7103440 tcacatgtgctcatgtcaatagataaactcaaata 7103406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 10567088 - 10567182
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaataga 132  Q
    |||| ||||||| || ||||||||||| |||| |||||||||||| ||||||  || ||||||| ||  || |||| ||| || |||||||||||    
T  10567088 gcttgtgaaaattagctgaaaacaacttatgatcatgtcataagctgtttccacaatctctcccaaacagtctcacgagtacttatgtcaataga 10567182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 12313212 - 12313163
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||    
T  12313212 gcttatgaaaataaggtgaaatcaacttatgaacatggcataagctgttt 12313163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 40944013 - 40944050
Alignment:
Q  107 gtttcacaagtgctcatgtcaatagataaactcaaata 144  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  40944013 gtttcacaagtgcttatgtcattagataaactcaaata 40944050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 11063519 - 11063579
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    ||||||||||||||| | ||||||||| ||| |||||||||||   |||||| ||||||||    
T  11063519 gcttatgaaaataagctaaaaacaacttatggacatgtcataatatgtttccataagctct 11063579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 12147488 - 12147532
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagc 82  Q
    ||||||||||||||  ||||||||| | |||||||||||||||||    
T  12147488 gcttatgaaaataaactgaaaacaatttatgaacatgtcataagc 12147532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 29316813 - 29316765
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaacatgtcataagcagttt 87  Q
    |||||| ||||||| |||||| |||| ||||||||||||||||| ||||    
T  29316813 cttatggaaataagctgaaaagaacttatgaacatgtcataagctgttt 29316765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 33256774 - 33256834
Alignment:
Q  41 tatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctccc 101  Q
    |||||||||||| ||| ||||  | ||||||||||||||||| |||| | |||||||||||    
T  33256774 tatgaaaataagctgagaacagtttatgaacatgtcataagctgttttcataagctctccc 33256834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 37766847 - 37766891
Alignment:
Q  55 gaaaacaactaatgaacatgtcataagcagtttccttaagctctc 99  Q
    |||||||||  ||||||||||||||||| |||||| |||||||||    
T  37766847 gaaaacaacatatgaacatgtcataagccgtttccgtaagctctc 37766891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 40158749 - 40158861
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctctcccgaagtgtttcacaagtgctcatgtcaatagataaac 137  Q
    ||||||| || |||| ||||||||||| || |||||||||||||| |||| | |||| || ||| |   || |||||||| || |||||| ||||||  |    
T  40158749 gcttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataagttcccccaatcagtctcacaagttcttatgtcagtagatatgc 40158848  T
Q  138 tcaaatatgccaa 150  Q
    ||||||| |||||    
T  40158849 tcaaataagccaa 40158861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 40682433 - 40682389
Alignment:
Q  39 cttatgaaaataagatgaaaacaactaatgaac-atgtcataagc 82  Q
    |||||||||||||| ||||||||||| |||||| |||||||||||    
T  40682433 cttatgaaaataagttgaaaacaacttatgaacaatgtcataagc 40682389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 41809284 - 41809224
Alignment:
Q  38 gcttatgaaaataagatgaaaacaactaatgaacatgtcataagcagtttccttaagctct 98  Q
    ||||||| ||||||| | ||||||||| ||||||||||||||||  ||||||  |||||||    
T  41809284 gcttatggaaataagctaaaaacaacttatgaacatgtcataagttgtttccacaagctct 41809224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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