View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_167 (Length: 239)
Name: NF8901_low_167
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_167 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34437435 - 34437657
Alignment:
| Q |
1 |
atgatagaatttggtttcctcttaattcctcttcatggaaatctataaacacttcttcaaaaattgatgttagtggagatggctataaaccaccatttga |
100 |
Q |
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| T |
34437435 |
atgatagaatttggtttcctcttaaatcctcttcatggaaatctataagcacttcttcaaaaatagatgttagtggagatggctataaaccaccatttga |
34437534 |
T |
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| Q |
101 |
agttattaggaatgctgctacaccaaggaatgagaatgatagtttggaattttcttggatttcagatgatccaaatttgaaattcaatatctacttgtac |
200 |
Q |
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| T |
34437535 |
agttattaggaatgctgctacaccaaggaatgagaatgatagtttggaattttcttggatttcagatgatcgaaatttgaaattcaatgtctacttgtac |
34437634 |
T |
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| Q |
201 |
tttgcagaagtggagaaacttaa |
223 |
Q |
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| T |
34437635 |
tttgcagaagtggagaaacttaa |
34437657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 34444184 - 34444404
Alignment:
| Q |
3 |
gatagaatttggtttcctcttaattcctcttcatggaaatctataaacacttcttcaaaaattgatgttagtggagatggctataaaccaccatttgaag |
102 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
34444184 |
gatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaaattgatgttagtggagatggctataaagcaccgtttgaag |
34444283 |
T |
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| Q |
103 |
ttattaggaatgctgctacaccaaggaatgagaatgatagtttggaattttcttggatttcagatgatccaaatttgaaattcaatatctacttgtactt |
202 |
Q |
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| T |
34444284 |
ttattagcaatgctgctacaccaaggaatgagaatgttagtttggatttttcttggatttcagatgatccaaatttgaaattcaatgtctacttgtactt |
34444383 |
T |
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| Q |
203 |
tgcagaagtggagaaacttaa |
223 |
Q |
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||| ||| | ||||||||||| |
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| T |
34444384 |
tgctgaatttgagaaacttaa |
34444404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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