View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_17 (Length: 721)

Name: NF8901_low_17
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_17
NF8901_low_17
[»] chr3 (23 HSPs)
chr3 (115-705)||(55301406-55301996)
chr3 (467-702)||(49199254-49199490)
chr3 (466-702)||(6095389-6095621)
chr3 (467-702)||(43403530-43403765)
chr3 (466-702)||(43401586-43401822)
chr3 (467-702)||(54593850-54594086)
chr3 (517-705)||(46860618-46860804)
chr3 (517-704)||(36018993-36019178)
chr3 (515-702)||(30236271-30236458)
chr3 (517-705)||(41819363-41819547)
chr3 (493-697)||(31340042-31340240)
chr3 (509-698)||(47304401-47304591)
chr3 (8-60)||(55301299-55301351)
chr3 (601-701)||(4570100-4570202)
chr3 (515-702)||(46173503-46173688)
chr3 (601-702)||(40913439-40913544)
chr3 (467-527)||(4570210-4570272)
chr3 (527-664)||(5270557-5270689)
chr3 (470-550)||(34491480-34491557)
chr3 (466-550)||(40913566-40913647)
chr3 (650-703)||(49229607-49229660)
chr3 (638-705)||(26323027-26323095)
chr3 (517-550)||(5433786-5433819)
[»] chr4 (31 HSPs)
chr4 (466-702)||(40632591-40632826)
chr4 (467-702)||(2209861-2210096)
chr4 (465-702)||(50673636-50673869)
chr4 (517-702)||(41964562-41964743)
chr4 (465-702)||(41639572-41639803)
chr4 (516-705)||(12073536-12073721)
chr4 (517-705)||(379524-379710)
chr4 (516-702)||(35662587-35662767)
chr4 (601-702)||(6656102-6656203)
chr4 (518-678)||(55085286-55085439)
chr4 (575-705)||(26699337-26699466)
chr4 (605-702)||(8648285-8648382)
chr4 (562-694)||(33990000-33990131)
chr4 (610-705)||(46703645-46703740)
chr4 (605-702)||(8665554-8665651)
chr4 (597-702)||(54883166-54883273)
chr4 (601-702)||(27416886-27416987)
chr4 (467-705)||(50262487-50262725)
chr4 (602-694)||(26364390-26364483)
chr4 (577-705)||(12119683-12119815)
chr4 (517-658)||(46703739-46703879)
chr4 (467-550)||(6656222-6656305)
chr4 (635-705)||(38811144-38811215)
chr4 (579-705)||(22882652-22882776)
chr4 (579-705)||(22934316-22934440)
chr4 (466-551)||(21688538-21688621)
chr4 (626-676)||(3786135-3786185)
chr4 (517-585)||(54881566-54881629)
chr4 (569-671)||(32091618-32091719)
chr4 (600-671)||(33090058-33090129)
chr4 (516-550)||(41961691-41961725)
[»] chr6 (14 HSPs)
chr6 (467-701)||(17758171-17758402)
chr6 (465-701)||(17763138-17763371)
chr6 (517-705)||(26800731-26800917)
chr6 (467-705)||(5043771-5044006)
chr6 (467-694)||(26829909-26830137)
chr6 (467-702)||(21589077-21589308)
chr6 (479-705)||(22424626-22424850)
chr6 (491-701)||(3808518-3808728)
chr6 (520-698)||(2972777-2972957)
chr6 (652-702)||(21593810-21593860)
chr6 (601-702)||(603005-603110)
chr6 (467-542)||(602903-602975)
chr6 (578-681)||(9572760-9572862)
chr6 (670-705)||(12221094-12221129)
[»] chr1 (23 HSPs)
chr1 (486-702)||(37876573-37876788)
chr1 (467-702)||(13548792-13549022)
chr1 (467-702)||(11348844-11349080)
chr1 (483-702)||(37032873-37033093)
chr1 (517-705)||(28242448-28242635)
chr1 (517-705)||(47115316-47115502)
chr1 (464-702)||(13546883-13547111)
chr1 (509-701)||(29136395-29136585)
chr1 (520-702)||(37168444-37168622)
chr1 (484-705)||(47255148-47255364)
chr1 (520-702)||(31925553-31925729)
chr1 (517-702)||(7482064-7482252)
chr1 (516-674)||(34603737-34603894)
chr1 (605-702)||(19754641-19754737)
chr1 (597-702)||(42297888-42297996)
chr1 (601-669)||(19752862-19752930)
chr1 (621-701)||(12318463-12318544)
chr1 (612-702)||(193757-193849)
chr1 (467-550)||(19752952-19753032)
chr1 (575-705)||(6808597-6808726)
chr1 (629-705)||(2926653-2926730)
chr1 (484-540)||(19754772-19754826)
chr1 (518-551)||(6398927-6398960)
[»] chr8 (13 HSPs)
chr8 (467-702)||(11384131-11384366)
chr8 (520-701)||(40328923-40329102)
chr8 (558-702)||(4283670-4283813)
chr8 (515-702)||(18655546-18655734)
chr8 (467-702)||(42434779-42435013)
chr8 (517-702)||(3772338-3772521)
chr8 (601-702)||(40221891-40221992)
chr8 (601-702)||(10930118-10930221)
chr8 (601-698)||(2999723-2999820)
chr8 (561-705)||(10240267-10240411)
chr8 (463-510)||(4743023-4743069)
chr8 (467-521)||(4283819-4283872)
chr8 (618-705)||(9633551-9633632)
[»] chr7 (17 HSPs)
chr7 (469-702)||(4508499-4508728)
chr7 (467-702)||(4510339-4510570)
chr7 (467-702)||(4512181-4512412)
chr7 (467-701)||(34310496-34310736)
chr7 (519-702)||(3259141-3259322)
chr7 (517-705)||(8359157-8359340)
chr7 (467-702)||(32357848-32358076)
chr7 (517-702)||(2390428-2390615)
chr7 (517-702)||(29608883-29609060)
chr7 (572-705)||(22328282-22328414)
chr7 (480-664)||(2360784-2360960)
chr7 (601-702)||(48599255-48599356)
chr7 (485-702)||(6359762-6359974)
chr7 (467-550)||(30814690-30814770)
chr7 (479-550)||(22270241-22270310)
chr7 (512-549)||(22552448-22552485)
chr7 (467-534)||(6430432-6430496)
[»] scaffold0176 (1 HSPs)
scaffold0176 (467-701)||(17793-18024)
[»] chr2 (11 HSPs)
chr2 (468-702)||(45727075-45727305)
chr2 (465-702)||(35446675-35446906)
chr2 (521-702)||(42287953-42288133)
chr2 (522-702)||(17450723-17450898)
chr2 (466-702)||(1631520-1631754)
chr2 (517-695)||(7451270-7451448)
chr2 (600-705)||(33648316-33648421)
chr2 (577-705)||(24398202-24398332)
chr2 (559-705)||(30217923-30218068)
chr2 (579-662)||(42261384-42261464)
chr2 (463-525)||(29868182-29868241)
[»] scaffold0466 (1 HSPs)
scaffold0466 (467-702)||(7473-7703)
[»] chr5 (15 HSPs)
chr5 (554-705)||(27637487-27637637)
chr5 (467-702)||(5058191-5058423)
chr5 (601-702)||(40147407-40147508)
chr5 (467-702)||(27015669-27015896)
chr5 (467-630)||(40751195-40751351)
chr5 (515-701)||(213613-213800)
chr5 (559-696)||(16640818-16640956)
chr5 (467-630)||(40763200-40763356)
chr5 (598-705)||(316907-317014)
chr5 (598-705)||(4160743-4160850)
chr5 (480-542)||(28278592-28278652)
chr5 (467-542)||(38747281-38747353)
chr5 (619-705)||(30793279-30793362)
chr5 (464-549)||(40147531-40147613)
chr5 (465-522)||(13488517-13488571)
[»] scaffold0236 (1 HSPs)
scaffold0236 (516-702)||(10635-10820)
[»] scaffold0197 (1 HSPs)
scaffold0197 (575-705)||(1291-1421)
[»] scaffold0927 (1 HSPs)
scaffold0927 (518-570)||(3431-3482)
[»] scaffold0002 (1 HSPs)
scaffold0002 (579-662)||(490219-490299)


Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 115 - 705
Target Start/End: Original strand, 55301406 - 55301996
Alignment:
Q  115 caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55301406 caagatcacaactgcatgcccaacataggtaatataatttcttttgtaattgctgcgtatataggttaaaggtgggtgtggctgtaatcattttatattt 55301505  T
Q  215 gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55301506 gaaggacccccaaatgtaggaaagagatccatgatacgggctatgcttcgggaggtatttggcgctgacggagtgcaggtatattcattcatcaatcttg 55301605  T
Q  315 tccttgtattctactatttttagcatgtttatgtctgtgtatatagattcctttgcttcttaatggcaggtcacagaagaatataaagacttcagcttga 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55301606 tccttgtattctactatttttagcatgtttatgtctgtgtatatagattcctttgcttcttaatggcaggtcacagaagaatataaagacttcaacttga 55301705  T
Q  415 aggtaatgcatactttcactgccattgcattttctcttttttaatcaatttgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgag 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55301706 aggtaatgcatactttcactgccattgcattttctcttttttaatcaatttgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgag 55301805  T
Q  515 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaa 614  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  55301806 gtgtggagcaagtatcaatgacaaccaataaccaaatgtgaataaaccacaagcaataaaaacaatctagatctaatctagaaaaccaagtgcatagcaa 55301905  T
Q  615 agccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  55301906 agccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacactaagaaatgttcaccaagttcggtccaacaat 55301996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 467 - 702
Target Start/End: Original strand, 49199254 - 49199490
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||    
T  49199254 tgttgtgaattc-ggtctcaaatttcacagcaatacaaattatatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaat-aaccacaa 49199351  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---ag 663  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||   ||    
T  49199352 gcaataacaacaatctagatctaatctagaaaa-caagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagtagagaaaaatag 49199450  T
Q  664 ataacaacaccaaga-aatgttcacccagttcggtccaac 702  Q
    | ||||||||||||| | ||||||||||||||||||||||    
T  49199451 acaacaacaccaagagattgttcacccagttcggtccaac 49199490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 466 - 702
Target Start/End: Original strand, 6095389 - 6095621
Alignment:
Q  466 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 565  Q
    ||||||||||||| |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||| ||||||||| ||| |||||    
T  6095389 gtgttgtgaattcgggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataatcaaatgtaaataa-ccaca 6095485  T
Q  566 agcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagat 665  Q
    |||||||| |||||| ||||  || |||| ||| | ||||| |||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  6095486 agcaataacaacaatatagacctagtctataaa-cgaagtgtatagcaaaaccacaatccaaccaaggcataaacaagataaagagagtaaagaaaagat 6095584  T
Q  666 aacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6095585 aacaacaccaagaaatgttcacacagttcggtccaac 6095621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 467 - 702
Target Start/End: Original strand, 43403530 - 43403765
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||||||||| |||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  43403530 tgttgtgaattccggactaaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataa-ccacaa 43403626  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---ag 663  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||  |||||   |     
T  43403627 gcaataataacaatctagatctaatctagaaaac-aagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagtggagaaaaataa 43403725  T
Q  664 ataacaacaccaaga-aatgttcacccagttcggtccaac 702  Q
    | ||||||| ||||| | ||||||||||||||||||||||    
T  43403726 acaacaacatcaagagattgttcacccagttcggtccaac 43403765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 466 - 702
Target Start/End: Original strand, 43401586 - 43401822
Alignment:
Q  466 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 565  Q
    ||||||||||||  ||||||||||||||||||||||| || |||  ||  ||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  43401586 gtgttgtgaatttgggactcaaatttcacaccaataccaactat--gatctgtggagcaagtatcaatggcaaccaataaccaaatgtaaataa-ccaca 43401682  T
Q  566 agcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---a 662  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||||||  ||||||  |||||||||||||||||||||||||||||| |||||   |    
T  43401683 agcaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaatcacaatctaaccaaaggataaacaagataaagagagtagagaaaaata 43401781  T
Q  663 gataacaacaccaaga-aatgttcacccagttcggtccaac 702  Q
    || ||||||||||||| | ||||||||||||||||||||||    
T  43401782 gacaacaacaccaagagattgttcacccagttcggtccaac 43401822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 467 - 702
Target Start/End: Complemental strand, 54594086 - 54593850
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||| ||| | ||||||||    
T  54594086 tgttgtgaattcgggactcaaatttcacaccaatacaaactatatgatatgtagagcaagtatcaatgacaaccaataaccaaatataaat-aaccacaa 54593988  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattc-aaccaaaggataaacaagataaagagag--taaagaaaag 663  Q
    ||||||| || ||| |||| ||| ||||  |||||| |||||||||||| ||||||| | || ||| | |||||||||||||||||||  ||||||||||    
T  54593987 gcaataacaagaatatagacatagtcta-taaaccatgtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagactaaagaaaag 54593889  T
Q  664 ataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  54593888 ataacaacaccaagaaatgttcacccagtttggtccaac 54593850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 517 - 705
Target Start/End: Complemental strand, 46860804 - 46860618
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    ||||||||| |||||||| |||||||||||||||||||| ||| |||||| ||| || |||||| ||||  ||||||| ||| ||||||||||||||||     
T  46860804 gtggagcaaatatcaatggcaaccaataaccaaatgtaaataa-ccacaaacaacaacaacaatatagacctaatctataaa-ccaagtgcatagcaaaa 46860707  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  46860706 ccacaatctaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaaaaaatgttcatccaattcggtccaacaat 46860618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 517 - 704
Target Start/End: Complemental strand, 36019178 - 36018993
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    ||||||||||||||||| ||||||||||| ||||||||| | | |||||||||| || |||||||||||| ||||||||||||| |||||  || ||||     
T  36019178 gtggagcaagtatcaatcacaaccaataatcaaatgtaaatta-ccacaagcaacaataacaatctagatctaatctagaaaac-aagtgtttaacaaaa 36019081  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaa 704  Q
    |||||||  |||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| |||||||||||||||||    
T  36019080 ccacaatctaaccaaaggataaacaagataaagagagtagaaaaaagataacaacaccaaaaaatgttcatccagttcggtccaacaa 36018993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 515 - 702
Target Start/End: Complemental strand, 30236458 - 30236271
Alignment:
Q  515 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaa 614  Q
    |||||||||||||||||||| ||||||| |||||||  |   | |||||||||||| || |||||| ||||  || |||| ||| ||||||||||| |||    
T  30236458 gtgtggagcaagtatcaatgtcaaccaacaaccaaaaattgattaaccacaagcaacaacaacaatatagacctagtctataaa-ccaagtgcataacaa 30236360  T
Q  615 agccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaa-tgttcacccagttcggtccaac 702  Q
    |  |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||    
T  30236359 aaacacaatccaaccaaggtataaacaagataaagagagtaaagaaaagataacaacaccaagaaattgttgacctagttcggtccaac 30236271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 517 - 705
Target Start/End: Original strand, 41819363 - 41819547
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    |||||||||||||||||| ||||||| ||||||    ||||||| ||||||||| || |||||| ||||  || || |  |||||||||||||||||||     
T  41819363 gtggagcaagtatcaatggcaaccaacaaccaa----aagtaaatcacaagcaacaacaacaatatagacctagtcca-taaaccaagtgcatagcaaaa 41819457  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaag-aaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||  ||||||||||||||||||||||||| |||| || |||| ||||||||||||| |||||||||||||||| |||||||||||    
T  41819458 ccacaatctaaccaaaggataaacaagataaagaaagtagagaaaaaaataacaacaccaataaatgttcacccagtttggtccaacaat 41819547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 493 - 697
Target Start/End: Original strand, 31340042 - 31340240
Alignment:
Q  493 acaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatc 592  Q
    ||||||||||||| ||||  | |||||||||| ||||||||| ||||||| |||||||     ||||||||||||||| || || ||| ||||  || ||    
T  31340042 acaccaatacaaactata--atgtgtggagcatgtatcaatggcaaccaacaaccaaa-----gtaaaccacaagcaacaacaataatatagacctagtc 31340134  T
Q  593 tagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagag-taaagaaaagataacaacaccaag-aaatgttcaccca 690  Q
    || ||| |||||||||||||||| ||||||| |||| || | |||||||||||||||| ||  ||||||||||||||||||||||| ||||||| |||||    
T  31340135 tataaa-ccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagataacaacaccaagaaaatgttgaccca 31340233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 509 - 698
Target Start/End: Complemental strand, 47304591 - 47304401
Alignment:
Q  509 tatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgca 608  Q
    ||||| |||||||||||||||||||||||||||| |||||     ||||||| ||||||||| || || ||| ||||  || ||||  ||||||||||||    
T  47304591 tatgatgtgtggagcaagtatcaatgacaaccaacaacca-----aagtaaatcacaagcaacaacaataatatagacctagtcta-taaaccaagtgca 47304498  T
Q  609 tagcaaagccacaattcaaccaaaggataaacaagataaag------agagtaaagaaaagataacaacaccaagaaa-tgttcacccagttcggtc 698  Q
    ||||||| ||||||| |||| || | |||||||||||||||      | || |||||||||||||||||||||| ||| |||| |||||||||||||    
T  47304497 tagcaaaaccacaatccaactaaggaataaacaagataaagaaagcaaaagaaaagaaaagataacaacaccaataaattgttgacccagttcggtc 47304401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 55301299 - 55301351
Alignment:
Q  8 cagagataaagcacttcagctgaaagcattggtaagaagaatatgatgcttcg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55301299 cagagataaagcacttcagctgaaagcattggtaagaagaatatgatgcttcg 55301351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 601 - 701
Target Start/End: Complemental strand, 4570202 - 4570100
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaa-gaaaagataacaacaccaagaaatgttcacccagttcggtc 698  Q
    ||||||||||||||| ||||||| |||   ||||| |||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||||||||||    
T  4570202 caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagggagcaaaagaaaatataacaacaccaagaaatgttgacccagttcggtc 4570103  T
Q  699 caa 701  Q
    |||    
T  4570102 caa 4570100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 515 - 702
Target Start/End: Complemental strand, 46173688 - 46173503
Alignment:
Q  515 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagata--taatctagaaaaccaagtgcatagc 612  Q
    |||||||||||||||||||| ||||||| |||||||     ||||||||||||||| |  || ||| || | |  || |||| ||| |||||||||||||    
T  46173688 gtgtggagcaagtatcaatggcaaccaacaaccaaa-----gtaaaccacaagcaacagcaataatatataaacctattctataaa-ccaagtgcatagc 46173595  T
Q  613 aaagccacaattcaaccaaaggataaacaagataaagagag-taaagaaaagataacaacaccaagaaa-tgttcacccagttcggtccaac 702  Q
    ||| ||||||| |||| ||   |||||||||||||||| ||  |||||||||||||||||||||||||| |||| | | |||||||||||||    
T  46173594 aaaaccacaatccaactaagaaataaacaagataaagaaagcaaaagaaaagataacaacaccaagaaattgttgatctagttcggtccaac 46173503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 601 - 702
Target Start/End: Complemental strand, 40913544 - 40913439
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacccagttcgg 696  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||| || |||||   ||| || |||||||||| | |||| |||||||||||    
T  40913544 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagattagagaaaaatagacaataacaccaagagattgttgacccagttcgg 40913445  T
Q  697 tccaac 702  Q
    ||||||    
T  40913444 tccaac 40913439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 467 - 527
Target Start/End: Complemental strand, 4570272 - 4570210
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaatt--atatgaggtgtggagcaagt 527  Q
    |||||||||||| | ||||||||||||||||||||||||||  |||||| |||||||||||||    
T  4570272 tgttgtgaattctgaactcaaatttcacaccaatacaaattatatatgatgtgtggagcaagt 4570210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 664
Target Start/End: Complemental strand, 5270689 - 5270557
Alignment:
Q  527 tatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaaca-atctagatataatctagaaaaccaagtgcatagcaaagccacaattc 625  Q
    |||||||||||||||||||| |||   ||  ||||||||||||| || || | |||||||| |||||||| || ||||||| |  ||||| |||||||      
T  5270689 tatcaatgacaaccaataacaaaa---aa--aaaccacaagcaacaacaatagatctagatctaatctagcaa-ccaagtgtaatgcaaaaccacaatcg 5270596  T
Q  626 aaccaaaggataaacaagataaagagagtaaagaaaaga 664  Q
    |||||||| ||||||| ||||||||||||| ||||||||    
T  5270595 aaccaaagaataaacatgataaagagagtagagaaaaga 5270557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 470 - 550
Target Start/End: Complemental strand, 34491557 - 34491480
Alignment:
Q  470 tgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 550  Q
    ||||||||| |||||||||||| ||||||||||||| ||||  | ||||||||||||||| |||| ||||||| |||||||    
T  34491557 tgtgaattc-ggactcaaattttacaccaatacaaactata--atgtgtggagcaagtattaatggcaaccaacaaccaaa 34491480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 466 - 550
Target Start/End: Complemental strand, 40913647 - 40913566
Alignment:
Q  466 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 550  Q
    ||||||||||||| ||||||||||||||||||||||||||  |||  | ||| |||||||||||||||| | ||||| |||||||    
T  40913647 gtgttgtgaattc-ggactcaaatttcacaccaatacaaacaata--atgtgcggagcaagtatcaatggcgaccaacaaccaaa 40913566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 650 - 703
Target Start/End: Original strand, 49229607 - 49229660
Alignment:
Q  650 agagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaaca 703  Q
    |||||||||||||||||||||||| ||||||| || |||||||||| |||||||    
T  49229607 agagtaaagaaaagataacaacactaagaaatatttacccagttcgatccaaca 49229660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 705
Target Start/End: Original strand, 26323027 - 26323095
Alignment:
Q  638 aacaagataaagagagtaaagaaaagataacaacacc-aagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||||||||||||| |||||||| || |||||| ||||| |||| ||||| ||||||||||||||    
T  26323027 aacaagataaagagagtagagaaaagagaataacaccaaagaattgtttacccacttcggtccaacaat 26323095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 550
Target Start/End: Original strand, 5433786 - 5433819
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaa 550  Q
    ||||||||||||||||||||||||||||||||||    
T  5433786 gtggagcaagtatcaatgacaaccaataaccaaa 5433819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 2e-85; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 466 - 702
Target Start/End: Complemental strand, 40632826 - 40632591
Alignment:
Q  466 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 565  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||    
T  40632826 gtgttgtgaattccggactcaaattacacaccaatacaaactatatgatgtgtagagcaagtatcaatggcaaccaataaccaaatgtaaataaaccaca 40632727  T
Q  566 agcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagat 665  Q
    |||||||| |||||| ||||  || |||| | | |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40632726 agcaataacaacaatatagacctagtctatata-ccaagtgcatggcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaaaaaaagat 40632628  T
Q  666 aacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||||||||||| |||||||||||||||||    
T  40632627 aacaacaccaagaaatgtttacccagttcggtccaac 40632591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 467 - 702
Target Start/End: Complemental strand, 2210096 - 2209861
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||| |||||||||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  2210096 tgttgttaattccggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataa-ccacaa 2210000  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---ag 663  Q
     |||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||  ||||||| |||||||||||||||||||||| |||||   ||    
T  2209999 acaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaaccacaatctaaccaaatgataaacaagataaagagagtagagaaaaatag 2209901  T
Q  664 ataacaacaccaaga-aatgttcacccagttcggtccaac 702  Q
    | ||||||||||||| | ||||||||||||||||||||||    
T  2209900 acaacaacaccaagagattgttcacccagttcggtccaac 2209861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 465 - 702
Target Start/End: Original strand, 50673636 - 50673869
Alignment:
Q  465 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 564  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||  || |||||||||||||||||||| |||||||||||||||||||| | | |||     
T  50673636 tgtgttgtgaattccggactcaaattacacattaatacaaattat--gatgtgtggagcaagtatcaatgtcaaccaataaccaaatgtaaatca-ccat 50673732  T
Q  565 aagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaagaaaag 663  Q
    ||||||||| |||||| ||||| || |||| ||   ||||||||||||||| ||||||| |||   ||||| ||||||||||||||||||||||||||||    
T  50673733 aagcaataacaacaatatagatctagtctataat--caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagtaaagaaaag 50673830  T
Q  664 ataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  50673831 ataacaacaccaagaaatgttcacctagttcggtccaac 50673869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 517 - 702
Target Start/End: Complemental strand, 41964743 - 41964562
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    |||||||||||||||||| ||||||| || ||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||     
T  41964743 gtggagcaagtatcaatggcaaccaacaatcaaatgtaaataa-ccacaagcaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaa 41964646  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41964645 ccacaatctaaccaaaggataaacaagata--gagagtaaagaaaagataacaacaccaagaaatgctcacccagttcggtccaac 41964562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 465 - 702
Target Start/End: Complemental strand, 41639803 - 41639572
Alignment:
Q  465 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 564  Q
    |||||||||||||| | |||||||||||||| ||||||||| |||  || |||||||||||||||||||| ||||||||||||||||||||    |||||    
T  41639803 tgtgttgtgaattcag-actcaaatttcacatcaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaa----accac 41639711  T
Q  565 aagcaataaaaaca---atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa 661  Q
    |||||| || ||     || ||||  || |||| ||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41639710 aagcaacaacaaatgatatatagacctagtctataat--caagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaagaaa 41639613  T
Q  662 agataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
     ||||||||||||||||||||||||| ||||||||||||||    
T  41639612 cgataacaacaccaagaaatgttcactcagttcggtccaac 41639572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 516 - 705
Target Start/End: Complemental strand, 12073721 - 12073536
Alignment:
Q  516 tgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaa 615  Q
    ||||||||||||||||||| |||  || ||||||  | || |||||||||||||| || |||||||||||| ||||||||||| ||||||||||| ||||    
T  12073721 tgtggagcaagtatcaatggcaataaacaaccaa--ggaa-taaaccacaagcaacaacaacaatctagatctaatctagaaa-ccaagtgcataacaaa 12073626  T
Q  616 gccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
     |||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12073625 accacaatctaaccaaagaataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacctagttcggtccaacaat 12073536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 517 - 705
Target Start/End: Complemental strand, 379710 - 379524
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    ||||||||||||||| || |||||||||| ||||||||| ||| |||||| ||| || |||||| ||||  || |||| ||| ||||||||||| ||||     
T  379710 gtggagcaagtatcagtggcaaccaataatcaaatgtaaataa-ccacaaacaacaacaacaatatagacctagtctataaa-ccaagtgcataacaaaa 379613  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  379612 ccacaatctaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcatccagttcggtccaacaat 379524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 516 - 702
Target Start/End: Complemental strand, 35662767 - 35662587
Alignment:
Q  516 tgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaa 615  Q
    ||||||||||||||||||| ||||||| |||||||  |||     ||| |||||| || |||||| |||| ||| |||| ||| ||||||||||||||||    
T  35662767 tgtggagcaagtatcaatggcaaccaacaaccaaaattaa-----ccataagcaacaacaacaatatagacatagtctataaa-ccaagtgcatagcaaa 35662674  T
Q  616 gccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
     ||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  35662673 accacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaaaaaatgttcattcagttcggtccaac 35662587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 601 - 702
Target Start/End: Complemental strand, 6656203 - 6656102
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtcca 700  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6656203 caagtgcatagcaaaaccacaatccaacaaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccaattcggtcca 6656104  T
Q  701 ac 702  Q
    ||    
T  6656103 ac 6656102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 518 - 678
Target Start/End: Original strand, 55085286 - 55085439
Alignment:
Q  518 tggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagc 617  Q
    ||||||||||||||||||||||||| || |||||       ||| ||||||||||| |||||||||||| |||| |||||| |||||||||||||||| |    
T  55085286 tggagcaagtatcaatgacaaccaacaatcaaatt------aactacaagcaataacaacaatctagatctaatttagaaa-ccaagtgcatagcaaaac 55085378  T
Q  618 cacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaaga 678  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  55085379 cacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaaga 55085439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 575 - 705
Target Start/End: Original strand, 26699337 - 26699466
Alignment:
Q  575 aacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacacc 674  Q
    |||||||||||| ||||||||||  |||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||||  |||     
T  26699337 aacaatctagatctaatctagaat-ccaagtgcatagcaaaaccataattgaaccaaagaataaacaagataaagagagtaaagaaaagataacggcact 26699435  T
Q  675 aagaaatgttcacccagttcggtccaacaat 705  Q
    ||||||| || ||||||||||||||||||||    
T  26699436 aagaaatttttacccagttcggtccaacaat 26699466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 605 - 702
Target Start/End: Complemental strand, 8648382 - 8648285
Alignment:
Q  605 tgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8648382 tgcatagcaaaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagtttggtccaac 8648285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 562 - 694
Target Start/End: Complemental strand, 33990131 - 33990000
Alignment:
Q  562 cacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa 661  Q
    ||||||||| || |||||||||||| ||||||||||| |||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||| | |||    
T  33990131 cacaagcaacaacaacaatctagatctaatctagaaa-ccaagtgcatagcaaatccagaattgaaccaaagaataaacaagataaagagagtagaaaaa 33990033  T
Q  662 agataacaacaccaagaaatgttcacccagttc 694  Q
    | |||| |||||||||||||||| |||||||||    
T  33990032 atataataacaccaagaaatgtttacccagttc 33990000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 610 - 705
Target Start/End: Complemental strand, 46703740 - 46703645
Alignment:
Q  610 agcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46703740 agcaaaaccacaatctaaccaaatgataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccaattcggtccaacaat 46703645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 605 - 702
Target Start/End: Complemental strand, 8665651 - 8665554
Alignment:
Q  605 tgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||    
T  8665651 tgcatagcaaaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgtacacctagtttggtccaac 8665554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 597 - 702
Target Start/End: Complemental strand, 54883273 - 54883166
Alignment:
Q  597 aaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaag-aaaagataacaacaccaagaaa-tgttcacccagttc 694  Q
    ||||||| |||| |||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||    
T  54883273 aaaccaaatgcagagcaaaaccacaattcaaccaaagaataaataagataaagagagtaaagaaaaagataacaacaccaagaaattgttgacccagttc 54883174  T
Q  695 ggtccaac 702  Q
    ||||||||    
T  54883173 ggtccaac 54883166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 601 - 702
Target Start/End: Original strand, 27416886 - 27416987
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtcca 700  Q
    ||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||  | |||| || ||||||||||||    
T  27416886 caagtgcatggcaaaaccacaatccaaccaaagaataaacaagataaagagagtaaagacaagataacaacaccaaagattgttgactcagttcggtcca 27416985  T
Q  701 ac 702  Q
    ||    
T  27416986 ac 27416987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 467 - 705
Target Start/End: Original strand, 50262487 - 50262725
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| | |||||||||||||||||||||||| |||  || |||||||||||||||||||||||||||| || ||||   || | ||||||||    
T  50262487 tgttgtgaattcag-actcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgacaaccaacaagcaaa-aaaaattaaccacaa 50262582  T
Q  567 gcaataaaaacaatctagatata-atctagaa---aaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa- 661  Q
    |||| || ||||||    ||||| | |||| |   || ||||||||| ||||| ||||||| |||  || | |||||||||||||| |||||| |||||     
T  50262583 gcaacaacaacaat----atatagacctagtatgtaatcaagtgcatggcaaaaccacaatccaagtaaggaataaacaagataaaaagagtagagaaaa 50262678  T
Q  662 --agataacaacaccaaga-aatgttcacccagttcggtccaacaat 705  Q
      ||| ||||||||||||| | |||||||||||||||||||||||||    
T  50262679 atagacaacaacaccaagagattgttcacccagttcggtccaacaat 50262725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 602 - 694
Target Start/End: Complemental strand, 26364483 - 26364390
Alignment:
Q  602 aagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaa-tgttcacccagttc 694  Q
    ||||| |||||||| ||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  26364483 aagtgtatagcaaaaccacaatccaagcaaggaataaacaagataaagagagtaaagaaaagataacaacaccaagaaattgttgacccagttc 26364390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 577 - 705
Target Start/End: Complemental strand, 12119815 - 12119683
Alignment:
Q  577 caatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa----agataacaaca 672  Q
    |||||||||| ||||||||||| | |||||||||||||| |||||||   |||||||  |||||||||||||||||||| |||||    |||| ||||||    
T  12119815 caatctagatctaatctagaaa-ctaagtgcatagcaaaaccacaatcggaccaaagactaaacaagataaagagagtagagaaaaaatagatgacaaca 12119717  T
Q  673 ccaagaaa-tgttcacccagttcggtccaacaat 705  Q
    |||||||| |||||||| ||||||||||||||||    
T  12119716 ccaagaaattgttcacctagttcggtccaacaat 12119683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 517 - 658
Target Start/End: Complemental strand, 46703879 - 46703739
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaa 614  Q
    |||||| |||||||||| ||||||||||||||||||||| ||| || ||||||| || |||||| || | |  || |||| ||   ||||||||||||||    
T  46703879 gtggagtaagtatcaataacaaccaataaccaaatgtaaataa-cctcaagcaacaacaacaatatatagacctattctataat--caagtgcatagcaa 46703783  T
Q  615 agccacaattcaaccaaaggataaacaagataaagagagtaaag 658  Q
    | |||||||  |||||||||||||||||||||||||||||||||    
T  46703782 aaccacaatctaaccaaaggataaacaagataaagagagtaaag 46703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 6656305 - 6656222
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 550  Q
    ||||||||||||||||||||||||||||| ||||| | |   ||||| ||||||||||||||||||||||| |||| |||||||    
T  6656305 tgttgtgaattccggactcaaatttcacatcaataaacaaactatgatgtgtggagcaagtatcaatgacatccaacaaccaaa 6656222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 635 - 705
Target Start/End: Original strand, 38811144 - 38811215
Alignment:
Q  635 ataaacaagataaagagagtaaagaaaagataacaacacc-aagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||| |||||||||||| |||||||| ||||||||| ||||| |||| ||||||||||||||||||||    
T  38811144 ataaacaatataaagagagtagagaaaagagaacaacaccgaagaattgtttacccagttcggtccaacaat 38811215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 579 - 705
Target Start/End: Original strand, 22882652 - 22882776
Alignment:
Q  579 atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaac--caaaggataaacaagataaagagagtaaagaaaagataacaacaccaa 676  Q
    |||||||||||||||| ||||||||||  | || ||| |||||||  ||   ||||| ||||| ||||||||||||||| |||||| ||||||   ||||    
T  22882652 atctagatataatcta-aaaaccaagtttaaagtaaaaccacaatggaatatcaaagaataaataagataaagagagtatagaaaaaataaca---ccaa 22882747  T
Q  677 gaaatgttcacccagttcggtccaacaat 705  Q
    |||||||| | ||||||||||||||||||    
T  22882748 gaaatgtttatccagttcggtccaacaat 22882776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 579 - 705
Target Start/End: Original strand, 22934316 - 22934440
Alignment:
Q  579 atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaac--caaaggataaacaagataaagagagtaaagaaaagataacaacaccaa 676  Q
    |||||||||||||||| ||||||||||  | || ||| |||||||  ||   ||||| ||||| ||||||||||||||| |||||| ||||||   ||||    
T  22934316 atctagatataatcta-aaaaccaagtttaaagtaaaaccacaatggaatatcaaagaataaataagataaagagagtatagaaaaaataaca---ccaa 22934411  T
Q  677 gaaatgttcacccagttcggtccaacaat 705  Q
    |||||||| | ||||||||||||||||||    
T  22934412 gaaatgtttatccagttcggtccaacaat 22934440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 466 - 551
Target Start/End: Complemental strand, 21688621 - 21688538
Alignment:
Q  466 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaat 551  Q
    |||||||||||| || |||||||||| |||| |||||||| |||  || |||||||||||||||||||||||| ||| ||| ||||    
T  21688621 gtgttgtgaatttcgaactcaaattttacactaatacaaactat--gatgtgtggagcaagtatcaatgacaatcaacaactaaat 21688538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 626 - 676
Target Start/End: Complemental strand, 3786185 - 3786135
Alignment:
Q  626 aaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaa 676  Q
    |||||||| || |||||||||||||||||| |||||||| |||||||||||    
T  3786185 aaccaaagaatgaacaagataaagagagtagagaaaagagaacaacaccaa 3786135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 585
Target Start/End: Complemental strand, 54881629 - 54881566
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctaga 585  Q
    |||||||||||||||||||||||||| |||||     || ||||||||||||||||| |||||| ||||    
T  54881629 gtggagcaagtatcaatgacaaccaacaacca-----aaataaaccacaagcaataacaacaatataga 54881566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 671
Target Start/End: Complemental strand, 32091719 - 32091618
Alignment:
Q  569 aataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaag-aaaagataa 667  Q
    ||||| |||||| ||||| |||||||| |||| ||||| | || ||| |||||||| ||| |||| ||||||||||||||||| ||| || |||||||||    
T  32091719 aataacaacaatttagatctaatctagcaaac-aagtgtaaagaaaa-ccacaattgaactaaagaataaacaagataaagagcgtagagaaaaagataa 32091622  T
Q  668 caac 671  Q
    ||||    
T  32091621 caac 32091618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 671
Target Start/End: Complemental strand, 33090129 - 33090058
Alignment:
Q  600 ccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaac 671  Q
    ||||||| | |||||| |||||||  |||||||  ||||||||||||||||||| | |||||||| ||||||    
T  33090129 ccaagtgtaaagcaaaaccacaatcgaaccaaaaaataaacaagataaagagagcagagaaaagagaacaac 33090058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 550
Target Start/End: Complemental strand, 41961725 - 41961691
Alignment:
Q  516 tgtggagcaagtatcaatgacaaccaataaccaaa 550  Q
    ||||| |||||||||||||||||||||||||||||    
T  41961725 tgtggggcaagtatcaatgacaaccaataaccaaa 41961691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 6e-76; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 467 - 701
Target Start/End: Complemental strand, 17758402 - 17758171
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||| || |||    
T  17758402 tgttgtgaattcgggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataa-ccgcaa 17758306  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagt-aaagaaaagat 665  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||| || |||| ||||||    
T  17758305 gcaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagcgtaaaaggaaagat 17758207  T
Q  666 aacaacaccaagaaatgttcacccagttcggtccaa 701  Q
    ||||||||||||||||||||||| ||||||||||||    
T  17758206 aacaacaccaagaaatgttcacctagttcggtccaa 17758171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 465 - 701
Target Start/End: Complemental strand, 17763371 - 17763138
Alignment:
Q  465 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 564  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||  || ||||||||||||||||||||||||||||||||||||||||| ||| | ||    
T  17763371 tgtgttgtgaattcgggactcaaatttcacaccaatataaactat--gatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataatc-ac 17763275  T
Q  565 aagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaa-gaaaag 663  Q
    || |||||| |||||||||||| ||||||||| ||| |||||||||||||| | |||||  ||||||||||| |||||||||||||||||||| ||||||    
T  17763274 aaacaataacaacaatctagatctaatctagataac-aagtgcatagcaaaactacaatctaaccaaaggatgaacaagataaagagagtaaaagaaaag 17763176  T
Q  664 ataacaacaccaagaaatgttcacccagttcggtccaa 701  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  17763175 ataacaacaccaagaaatgttcacctagttcggtccaa 17763138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 517 - 705
Target Start/End: Complemental strand, 26800917 - 26800731
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    |||||||||||||||||| |||||||||||||||||||| | | ||||||||||||| |||||||||||| || |||||||||| ||||||||||||||     
T  26800917 gtggagcaagtatcaatggcaaccaataaccaaatgtaaatta-ccacaagcaataacaacaatctagatctagtctagaaaac-aagtgcatagcaaaa 26800820  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||  ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26800819 ccacaatctaaccaaaagataaacaagataaaaagagtagagaaaagataacaacaccaagaaatgttcatccagttcggtccaacaat 26800731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 467 - 705
Target Start/End: Complemental strand, 5044006 - 5043771
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    ||||||||||||| |||| |||||||||||||||||||| |||  || |||||||||| |||||||||||||||||||||||||||||| ||| || |||    
T  5044006 tgttgtgaattcctgacttaaatttcacaccaatacaaactat--gatgtgtggagcacgtatcaatgacaaccaataaccaaatgtaaataa-cctcaa 5043910  T
Q  567 gcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaaga 664  Q
    |||| || |||||| || | |  || |||| ||   ||||||||||||||| ||||||| |||||||   ||||||||||||||||||||||||||||||    
T  5043909 gcaacaacaacaatatatagacctattctataat--caagtgcatagcaaaaccacaatccaaccaagaaataaacaagataaagagagtaaagaaaaga 5043812  T
Q  665 taacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5043811 taacaacaccaagaaatgttcacccagttcggtccaacaat 5043771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 467 - 694
Target Start/End: Original strand, 26829909 - 26830137
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||| | ||||||||    
T  26829909 tgttgtgaattcggggctcaaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatggaaaccaataaccaaatgtaaat-aaccacaa 26830007  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattc-aaccaaaggataaacaagataa--agagagtaaagaaaag 663  Q
    ||||||| |||||| || |  || ||||  ||||||||||||||||||| ||||||| | || ||| | |||||||||||||  ||||||||||||||||    
T  26830008 gcaataacaacaatataaacctagtcta-taaaccaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaag 26830106  T
Q  664 ataacaacaccaagaaatgttcacccagttc 694  Q
    |||||||||||||||||||||||||||||||    
T  26830107 ataacaacaccaagaaatgttcacccagttc 26830137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 467 - 702
Target Start/End: Complemental strand, 21589308 - 21589077
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| |||||||||||||||||||||| ||| |||  || ||||||||||||||||||||  |||||| |||||||   | || ||||||||    
T  21589308 tgttgtgaattctggactcaaatttcacaccaatataaactat--gatgtgtggagcaagtatcaatggaaaccaacaaccaaaaa-atgttaaccacaa 21589212  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 666  Q
    ||||||| |||||| ||||  || |||| ||| |||||||||||||||| ||||||| |||| || | ||||||||||||| || |||||||||||||||    
T  21589211 gcaataacaacaatatagacctagtctataaa-ccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaggaaagtaaagaaaagata 21589113  T
Q  667 acaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||||||||||||||||||||||||||||    
T  21589112 acaacaccaagaaatgttcacccagttcggtccaac 21589077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 479 - 705
Target Start/End: Original strand, 22424626 - 22424850
Alignment:
Q  479 cggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaaca 578  Q
    |||||||||||||||||  |||||||| |||  || ||||||||||||||||||||  ||||||||||||||||||| ||| |||||| ||| || ||||    
T  22424626 cggactcaaatttcacattaatacaaactat--gatgtgtggagcaagtatcaatggtaaccaataaccaaatgtaaataa-ccacaaacaacaacaaca 22424722  T
Q  579 atctagatataatctagaaaaccaagtgcatagcaaag--ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaa 676  Q
    |||||||| |||| |||||| |||||||||| | |||   |||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  22424723 atctagatctaatatagaaa-ccaagtgcattgaaaaaaaccacaatctaacctaaggataaacaagataaagagagtagagaaaagataacaacaccaa 22424821  T
Q  677 gaaatgttcacccagttcggtccaacaat 705  Q
    |||||||||||||||| ||||||||||||    
T  22424822 gaaatgttcacccagtacggtccaacaat 22424850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 491 - 701
Target Start/End: Original strand, 3808518 - 3808728
Alignment:
Q  491 tcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataa 590  Q
    ||||||||||||||| |||  ||  ||||||||||||||||||| |||||||||| ||||||||| ||| ||| ||||||||  |||||||||||| |||    
T  3808518 tcacaccaatacaaactat--gatatgtggagcaagtatcaatggcaaccaataatcaaatgtaaataa-ccaaaagcaatagcaacaatctagatctaa 3808614  T
Q  591 tctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttca 686  Q
    |||||||||| || ||||||||||| ||| |||  |||||||||||||||||||||||||||||| |||||   ||| |||||| |||||| | ||||||    
T  3808615 tctagaaaacaaa-tgcatagcaaaaccataatctaaccaaaggataaacaagataaagagagtagagaaaaatagacaacaaccccaagagattgttca 3808713  T
Q  687 cccagttcggtccaa 701  Q
    || ||||||||||||    
T  3808714 cctagttcggtccaa 3808728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 520 - 698
Target Start/End: Original strand, 2972777 - 2972957
Alignment:
Q  520 gagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag-cc 618  Q
    ||||||||||||||| |||||||||| ||||||||| ||| |||||| ||| || |||||| ||||  || |||| ||| | |||||||||| |||  ||    
T  2972777 gagcaagtatcaatggcaaccaataatcaaatgtaaataa-ccacaaacaacaacaacaatatagacctagtctataaa-ctaagtgcatagaaaaaacc 2972874  T
Q  619 acaattcaaccaaaggataaacaagataaagagag----taaagaaaagataacaacaccaagaaatgttcacccagttcggtc 698  Q
    |||||  ||||||| ||||||||||||| ||||||    |||| |||| ||||||||||||||||||||||||| |||||||||    
T  2972875 acaatctaaccaaatgataaacaagatatagagagagagtaaaaaaaa-ataacaacaccaagaaatgttcacctagttcggtc 2972957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 652 - 702
Target Start/End: Complemental strand, 21593860 - 21593810
Alignment:
Q  652 agtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21593860 agtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 21593810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 601 - 702
Target Start/End: Original strand, 603005 - 603110
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacccagttcgg 696  Q
    ||||||||||| ||| ||||||| ||||||| | ||||||||||||||||||||| |||||   ||| ||||||| ||||| | |||| |||||||||||    
T  603005 caagtgcatagtaaaaccacaatccaaccaaggcataaacaagataaagagagtagagaaaaatagacaacaacatcaagagattgttgacccagttcgg 603104  T
Q  697 tccaac 702  Q
    ||||||    
T  603105 tccaac 603110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 542
Target Start/End: Original strand, 602903 - 602975
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaa 542  Q
    |||||||||||| |||||||||  ||||||||||||||| |||  || |||||||||||||||||||| |||||||    
T  602903 tgttgtgaattc-ggactcaaaactcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaa 602975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 578 - 681
Target Start/End: Complemental strand, 9572862 - 9572760
Alignment:
Q  578 aatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaag 677  Q
    ||||||||| ||||||||||| |||||||||||| ||  |||||||  || ||||| ||| | |||||||||| |  | |||||||||||||||| ||||    
T  9572862 aatctagatctaatctagaaa-ccaagtgcatagaaataccacaatcgaatcaaagaatagataagataaagacacgagagaaaagataacaacatcaag 9572764  T
Q  678 aaat 681  Q
    ||||    
T  9572763 aaat 9572760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 705
Target Start/End: Original strand, 12221094 - 12221129
Alignment:
Q  670 acaccaagaaatgttcacccagttcggtccaacaat 705  Q
    ||||||||||||||| ||||||||||||||||||||    
T  12221094 acaccaagaaatgtttacccagttcggtccaacaat 12221129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 6e-76; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 486 - 702
Target Start/End: Original strand, 37876573 - 37876788
Alignment:
Q  486 aaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctaga 585  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||| | ||||    
T  37876573 aaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaagcaaaaacaacactataga 37876672  T
Q  586 tataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 685  Q
      || |||| ||| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37876673 cctagtctataaa-ccaagtgcatagaaaaaccacaattcaaccaaatgataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttc 37876771  T
Q  686 acccagttcggtccaac 702  Q
    |||||||||||| ||||    
T  37876772 acccagttcggttcaac 37876788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 467 - 702
Target Start/End: Original strand, 13548792 - 13549022
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||     |||||||||||    
T  13548792 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatgacaaccaacaaccaaa-----gtaaaccacaa 13548886  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 666  Q
    |||| || || ||| ||||  || |||| ||| | |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  13548887 gcaacaacaataatatagacctagtctataaaccaaagtgcatagcaaaaccacaatccaaccaaagaataaacaagataaagagagtaaagaaaagata 13548986  T
Q  667 acaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||||||||||||||||||||||||||||    
T  13548987 acaacaccaagaaatgttcacccagttcggtccaac 13549022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 467 - 702
Target Start/End: Complemental strand, 11349080 - 11348844
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||  ||||| ||||||||| | ||||||||    
T  11349080 tgttgtgaattcgggactcaaattttacaccaatacaaactatatgatgtgtggagcaagtatcaatgacaattaataatcaaatgtaaat-aaccacaa 11348982  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattc-aaccaaaggataaacaagataa--agagagtaaagaaaag 663  Q
    ||||||| |||||| ||||  || ||||  ||||||||||||||||||| ||||||| | || ||| | |||||||||||||  ||||||||||||||||    
T  11348981 gcaataacaacaatatagacctagtcta-taaaccaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaag 11348883  T
Q  664 ataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  11348882 ataacaacatcaagaaatgttcactcagttcggtccaac 11348844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 483 - 702
Target Start/End: Original strand, 37032873 - 37033093
Alignment:
Q  483 ctcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatct 582  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||    
T  37032873 ctcaaatttcacaacaatacaaactatatgatgtgtggagcaaatatcaatggcaaccaataaccaaatgtaaat-aaccacaagcaataacaacaatct 37032971  T
Q  583 agatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa--agataacaacaccaaga-a 679  Q
    |||| |||||||||||| |||||||||||||||  |||| |  |||||||||||||||||||||||||||||| |||||  ||| |||||||| || | |    
T  37032972 agatctaatctagaaaa-caagtgcatagcaaaatcacactctaaccaaaggataaacaagataaagagagtagagaaaatagacaacaacacgaataga 37033070  T
Q  680 atgttcacccagttcggtccaac 702  Q
     ||||||||||||||||||||||    
T  37033071 ttgttcacccagttcggtccaac 37033093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 517 - 705
Target Start/End: Complemental strand, 28242635 - 28242448
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || ||||||| || |||||||||||| |||| |||||| ||||||| ||||||||     
T  28242635 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataa-cctcaagcaacaacaacaatctagatctaatttagaaa-ccaagtgaatagcaaaa 28242538  T
Q  617 -ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
     |||||||  ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28242537 accacaatctaacaaaatgataaacaagataaagagagtagagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 28242448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 517 - 705
Target Start/End: Complemental strand, 47115502 - 47115316
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    |||||||||||||||||||||| ||| || ||||||||| ||| | ||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||     
T  47115502 gtggagcaagtatcaatgacaatcaacaatcaaatgtaaataatc-acaagcaataacaacaatctagatctaatctagaaaac-aagtgcataacaaaa 47115405  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||  ||| ||||||||||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47115404 ccacaatctaacaaaaggataaacaagataaaaagagcagagaaaagataacaacatcaagaaatgttcacccagttcggtccaacaat 47115316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 464 - 702
Target Start/End: Original strand, 13546883 - 13547111
Alignment:
Q  464 ttgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaacca 563  Q
    ||||||||||||||| || |||||||||| |||||||||||| ||||| | |||||||||||||||||||| ||||||| |||||||     ||||||||    
T  13546883 ttgtgttgtgaattc-ggtctcaaatttctcaccaatacaaactatataatgtgtggagcaagtatcaatggcaaccaacaaccaaa-----gtaaacca 13546976  T
Q  564 caagcaataaaaacaatctaga--tataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa 661  Q
    ||||||| || || ||| ||||  |||| | || ||| |||||||||     || ||||||| ||||||||| |||||||||||||||||||||||||||    
T  13546977 caagcaacaacaataatatagacctatagtttataaa-ccaagtgca-----aaaccacaatccaaccaaagaataaacaagataaagagagtaaagaaa 13547070  T
Q  662 agataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13547071 agataacaacaccaagaaatgttcacccagttcggtccaac 13547111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 509 - 701
Target Start/End: Complemental strand, 29136585 - 29136395
Alignment:
Q  509 tatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgca 608  Q
    ||||| |||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||| |||||  ||||  || |||| ||| |||||||||    
T  29136585 tatgatgtgtggagcaagtaccaatgacaaccaataaccaaatataactaa-ccacaagcaataacaacaaaatagacctagtctataaa-ccaagtgca 29136488  T
Q  609 tagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata-acaacaccaagaaatgttcacccagttcggtccaa 701  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||| ||||||||||||    
T  29136487 tagcaaaaccacaatctaaccaaaggataaacaagataaagagagtagagaaaa-atagacagcaccaagaaatgttcacctagttcggtccaa 29136395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 520 - 702
Target Start/End: Complemental strand, 37168622 - 37168444
Alignment:
Q  520 gagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagcca 619  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| || || | | ||||  || |||| ||   ||||||||||||||| |||    
T  37168622 gagcaagtatcaatgacaaccaataaccaaatgtaaataa-cctcaagcaacaacaata-tatagacctagtctataat--caagtgcatagcaaaacca 37168527  T
Q  620 caattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37168526 caatcaaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 37168444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 484 - 705
Target Start/End: Original strand, 47255148 - 47255364
Alignment:
Q  484 tcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatcta 583  Q
    |||||||||||||||||| |||   ||||| |||||||||| ||||||||| ||||||| |||||     |||||||||| |||||| || || ||| ||    
T  47255148 tcaaatttcacaccaatataaa--ctatgatgtgtggagcaggtatcaatggcaaccaacaacca-----aagtaaaccataagcaacaacaataatata 47255240  T
Q  584 gatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaa---agaaaagataacaacaccaagaaa 680  Q
    ||  || ||||  ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||   | |||| |||||||||||||||||    
T  47255241 gacctagtcta-taaaccaagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagtaaaagaaaaaaaataacaacaccaagaaa 47255339  T
Q  681 tgttcacccagttcggtccaacaat 705  Q
    |||||||||||||||||||||||||    
T  47255340 tgttcacccagttcggtccaacaat 47255364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 520 - 702
Target Start/End: Original strand, 31925553 - 31925729
Alignment:
Q  520 gagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagcca 619  Q
    ||||||||||||||||||||||| ||||||||       ||||||||||||||| || ||| ||||  || |||| ||| |||||||||||||||| |||    
T  31925553 gagcaagtatcaatgacaaccaacaaccaaatt------aaccacaagcaataacaataatatagacctagtctataaa-ccaagtgcatagcaaaacca 31925645  T
Q  620 caattcaaccaaaggataa-acaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||| ||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  31925646 caatccaaccaaagaataatacaagataacgagagtaaagaaaaaataacaacaccaagaaatgttcacctagttcggtccaac 31925729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 517 - 702
Target Start/End: Original strand, 7482064 - 7482252
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaa---ccacaagcaataaaaacaatctagata--taatctagaaaaccaagtgcatag 611  Q
    |||||||||||||||||||||||||||||||||||  | |||||   || ||||||| || |||||| || | |  || |||| ||   |||||||||||    
T  7482064 gtggagcaagtatcaatgacaaccaataaccaaattaatgtaaataacctcaagcaacaacaacaatatatagacctagtctataat--caagtgcatag 7482161  T
Q  612 caaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||| ||||||| ||||||| | ||||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||    
T  7482162 caaaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaaagatgacaataccatgaaatgttcacctagttcggtccaac 7482252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 516 - 674
Target Start/End: Complemental strand, 34603894 - 34603737
Alignment:
Q  516 tgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagata--taatctagaaaaccaagtgcatagca 613  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| || ||||||  || | |||| || | |  || |||| ||   |||||||||||||    
T  34603894 tgtggagcaagtatcaatgacaaccaataatcaaatgtaaataa-cctcaagcaccaacagcaatatatagacctagtctataat--caagtgcatagca 34603798  T
Q  614 aagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacacc 674  Q
    || ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  34603797 aaaccacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacacc 34603737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 605 - 702
Target Start/End: Complemental strand, 19754737 - 19754641
Alignment:
Q  605 tgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |||| ||||| |||||||||||    
T  19754737 tgcatagcaaaaccacaatccaacaaaaggataaacaagataaagagagtaaagaaaagataac-acaccaaaaattgttgacccacttcggtccaac 19754641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 597 - 702
Target Start/End: Original strand, 42297888 - 42297996
Alignment:
Q  597 aaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacccagt 692  Q
    |||||||||||||||||||  |||||| ||||||||  |||||||||||||| ||||||||||||   ||| ||||||||||||| | ||||||||||||    
T  42297888 aaaccaagtgcatagcaaaatcacaatccaaccaaataataaacaagataaa-agagtaaagaaaaatagacaacaacaccaagagattgttcacccagt 42297986  T
Q  693 tcggtccaac 702  Q
    ||||||||||    
T  42297987 tcggtccaac 42297996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 601 - 669
Target Start/End: Complemental strand, 19752930 - 19752862
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataaca 669  Q
    ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  19752930 caagtgcatagtaaaaccacaatccaacaaaaggataaacaagataaagagagtaaataaaagataaca 19752862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 621 - 701
Target Start/End: Original strand, 12318463 - 12318544
Alignment:
Q  621 aattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaa-tgttcacccagttcggtccaa 701  Q
    |||| |||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||| |||| ||| ||||||||||||    
T  12318463 aattgaaccaaagaataaacaagataaagggagtaaagaaaagagaacaacaccaaaaaattgtttacctagttcggtccaa 12318544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 612 - 702
Target Start/End: Complemental strand, 193849 - 193757
Alignment:
Q  612 caaagccacaattcaaccaaaggataaacaagataaagagagtaaa-gaaaagataac-aacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||| ||||||| ||||||| | |||||||||||||| | || ||| || |||||||| ||||||||||||||||||||||||||||||||||    
T  193849 caaaaccacaatccaaccaaggaataaacaagataaataaagcaaaagagaagataacgaacaccaagaaatgttcacccagttcggtccaac 193757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 19753032 - 19752952
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 550  Q
    |||||||||||| | ||||||||||||||||||||||||   ||||| ||| | |||||||||||||| ||||||| |||||||    
T  19753032 tgttgtgaattcag-actcaaatttcacaccaatacaaa--ctatgatgtgcgaagcaagtatcaatggcaaccaacaaccaaa 19752952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 575 - 705
Target Start/End: Complemental strand, 6808726 - 6808597
Alignment:
Q  575 aacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacacc 674  Q
    |||||||||||| | ||||||||| ||||||| | ||||||  ||| ||  ||| |||| ||||||||||||||||||||| | || | | |||||| ||    
T  6808726 aacaatctagatctgatctagaaa-ccaagtgtaaagcaaaatcactatcaaactaaagcataaacaagataaagagagtagaaaacaaagaacaactcc 6808628  T
Q  675 aagaaatgttcacccagttcggtccaacaat 705  Q
    ||||||| || | | ||||||| ||||||||    
T  6808627 aagaaatatttatctagttcggaccaacaat 6808597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 705
Target Start/End: Complemental strand, 2926730 - 2926653
Alignment:
Q  629 caaaggataaacaagataaagagagtaaagaaaagataacaacacc-aagaaatgttcacccagttcggtccaacaat 705  Q
    ||||| ||||||||||||||||||||| || ||| | ||||||||| ||||| |||| ||| |||||||| |||||||    
T  2926730 caaagaataaacaagataaagagagtagagtaaaaagaacaacaccaaagaattgtttacctagttcggtgcaacaat 2926653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 540
Target Start/End: Complemental strand, 19754826 - 19754772
Alignment:
Q  484 tcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaacc 540  Q
    |||||||||||||||||| ||| |||  || ||||||||||||||||||||||||||    
T  19754826 tcaaatttcacaccaatagaaactat--gatgtgtggagcaagtatcaatgacaacc 19754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 551
Target Start/End: Complemental strand, 6398960 - 6398927
Alignment:
Q  518 tggagcaagtatcaatgacaaccaataaccaaat 551  Q
    ||||||||||||||||| ||||||||||||||||    
T  6398960 tggagcaagtatcaatggcaaccaataaccaaat 6398927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 467 - 702
Target Start/End: Complemental strand, 11384366 - 11384131
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaata--caaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 564  Q
    ||||||||| || ||||||||||||||||||||||  |||||||||||| |||||||| |||||||| |||||| |||||||||||||||| ||| ||||    
T  11384366 tgttgtgaactctggactcaaatttcacaccaatatacaaattatatgatgtgtggagtaagtatcattgacaagcaataaccaaatgtaaataa-ccac 11384268  T
Q  565 aagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaaga 664  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||| |    
T  11384267 aagcaataacaacaatctagatctaatctagaaaac-aagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaagagagtaaagaaaa-a 11384170  T
Q  665 ta-acaacaccaagaaatgttcacccagttcggtccaac 702  Q
    || |||||||||| |||||||||||||||||||||||||    
T  11384169 tagacaacaccaaaaaatgttcacccagttcggtccaac 11384131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 520 - 701
Target Start/End: Complemental strand, 40329102 - 40328923
Alignment:
Q  520 gagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagcca 619  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||| ||||||| ||||||||||||| |||||||||||||| |||    
T  40329102 gagcaagtatcaatgacaaccaacaaccaaatgtaaataa-ccacaagcaataacaacagtctagatctaatctagaaaac-aagtgcatagcaaaacca 40329005  T
Q  620 caattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaa 701  Q
    ||||  ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  40329004 caatctaaccaaaggataaacaagaaaaggagagtagagaaaagataacaacaccaagaaatgttcactcagttccgtccaa 40328923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 558 - 702
Target Start/End: Complemental strand, 4283813 - 4283670
Alignment:
Q  558 aaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaa 657  Q
    |||||||||||||||| |||||| ||||  || |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4283813 aaaccacaagcaataacaacaatatagacctagtctataaa-ccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaa 4283715  T
Q  658 gaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4283714 gaaaagataacaacaccaagaaatgttcacccagttcggtccaac 4283670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 515 - 702
Target Start/End: Complemental strand, 18655734 - 18655546
Alignment:
Q  515 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaa 614  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||||| || |||| ||| |||||||||||||||    
T  18655734 gtgtggagcaaatatcaatgacaaccaataaccaaatgtaaataaac-acaagcaataacaacaatatagatctagtctataaa-ccaagtgcatagcaa 18655637  T
Q  615 agccacaattcaaccaaagga-taaacaagataaagagag--taaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    | ||||||| |||   ||||| ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18655636 aaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaagataacaacaccaaaaaatgttcacccagttcggtccaac 18655546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 467 - 702
Target Start/End: Original strand, 42434779 - 42435013
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||  | |||||||||||||||||||||||| ||||||| ||| |||||||||||||||| ||||||| |||||||  |  || ||||||||    
T  42434779 tgttgtgaatttggaactcaaatttcacaccaatacaaactatatgatgtgaggagcaagtatcaatggcaaccaacaaccaaaaat--gttaaccacaa 42434876  T
Q  567 gcaataaaaacaatc--tagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaagaaaag 663  Q
    |||| || ||||||   ||||  || |||| ||   ||||||||||||||| ||||||| |||   ||||| ||||||||||||||| ||||||||||||    
T  42434877 gcaacaacaacaatagatagacctagtctataat--caagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagaaagtaaagaaaag 42434974  T
Q  664 ataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42434975 ataacaacaccaagaaatgttcacccagttcggtccaac 42435013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 517 - 702
Target Start/End: Complemental strand, 3772521 - 3772338
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    |||||||| ||||||||| |||||||| |||||| | || ||| |||||||||| || |||||||||||| ||||||||||| | ||||||||||||||     
T  3772521 gtggagcaggtatcaatggcaaccaatcaccaaaagaaaataa-ccacaagcaacaacaacaatctagatttaatctagaaatc-aagtgcatagcaaaa 3772424  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||  |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| || | |||||| ||||||||    
T  3772423 ccacaatctaaccaaagaataaacaagataaagagagtagagaaaagataacaccaccaagaaatatttatccagtttggtccaac 3772338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 601 - 702
Target Start/End: Complemental strand, 40221992 - 40221891
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtcca 700  Q
    ||||||||||||||| ||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||  | | || |||||||||||||||    
T  40221992 caagtgcatagcaaaaccacaatccaaccaaagaatgaacaagataaagagagtaaagacaagataacaacaccaaagattattgacccagttcggtcca 40221893  T
Q  701 ac 702  Q
    ||    
T  40221892 ac 40221891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 601 - 702
Target Start/End: Original strand, 10930118 - 10930221
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagag-taaagaaaagataacaacaccaagaaa-tgttcacccagttcggtc 698  Q
    ||||||||||||||| ||||||| |||| |||| ||||||||||||||| |||  |||||||||||||||||||||||||| |||| |||||||||||||    
T  10930118 caagtgcatagcaaaaccacaatccaacaaaagaataaacaagataaagggagcaaaagaaaagataacaacaccaagaaattgttgacccagttcggtc 10930217  T
Q  699 caac 702  Q
    ||||    
T  10930218 caac 10930221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 601 - 698
Target Start/End: Original strand, 2999723 - 2999820
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtc 698  Q
    |||||||||||||||  ||||||  |||||||| ||||||||||||||||||||| |||||||||| ||||| ||||||||||| || ||||||||||    
T  2999723 caagtgcatagcaaaatcacaatctaaccaaagaataaacaagataaagagagtagagaaaagatatcaacatcaagaaatgtttactcagttcggtc 2999820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 561 - 705
Target Start/End: Complemental strand, 10240411 - 10240267
Alignment:
Q  561 ccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaaga 659  Q
    |||||| |||||| |||||||||||| ||||||||||| | || || | |||||| |||||||  |||||||  | ||||||||||||||||||| ||||    
T  10240411 ccacaaacaataacaacaatctagatctaatctagaaa-cgaaatgtaaagcaaaaccacaatcgaaccaaaaaaataaacaagataaagagagtgaaga 10240313  T
Q  660 aaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    ||||| ||||| ||||||||||||| ||| |||| | |||||||||    
T  10240312 aaagagaacaaaaccaagaaatgtttacctagtttgatccaacaat 10240267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 4743023 - 4743069
Alignment:
Q  463 tttgtgttgtgaattccggactcaaatttcacaccaatacaaattata 510  Q
    |||||||||||||||| |||||||||| ||||||||||||||| ||||    
T  4743023 tttgtgttgtgaattc-ggactcaaatctcacaccaatacaaactata 4743069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 521
Target Start/End: Complemental strand, 4283872 - 4283819
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtgga 521  Q
    |||||||||||| || ||||||||| ||||||||||||| ||||||| |||||||    
T  4283872 tgttgtgaattc-ggtctcaaattttacaccaatacaaactatatgatgtgtgga 4283819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 618 - 705
Target Start/End: Original strand, 9633551 - 9633632
Alignment:
Q  618 cacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacacc-aagaaatgttcacccagttcggtccaacaat 705  Q
    ||||||| |||||||| ||||||||||||||||||||       ||| ||||||||| ||||| |||| || |||||||||||||||||    
T  9633551 cacaattgaaccaaagaataaacaagataaagagagt-------agaaaacaacaccaaagaattgtttacacagttcggtccaacaat 9633632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 9e-75; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 469 - 702
Target Start/End: Original strand, 4508499 - 4508728
Alignment:
Q  469 ttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagc 568  Q
    |||||||||| || ||||||||||||||||||||||| |||  || || || |||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  4508499 ttgtgaattc-ggtctcaaatttcacaccaatacaaactat--gaagtatgaagcaagtatcaatgccaaccaataaccaaatataaataaaccacaagc 4508595  T
Q  569 aataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataac 668  Q
    ||||| |||||| ||||  || |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4508596 aataacaacaatatagacctagtctataaa-ccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaagaaaatataac 4508694  T
Q  669 aacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||||||||||||||||||||||||||    
T  4508695 aacaccaagaaatgttcacccagttcggtccaac 4508728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 467 - 702
Target Start/End: Original strand, 4510339 - 4510570
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  4510339 tgttgtgaattc-ggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaa 4510435  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 666  Q
    ||||||| |||||| ||||  || |||| ||| | ||||||||||||||  ||||||||||| || ||||||||||||| ||||||||||||||||||||    
T  4510436 gcaataacaacaatatagacctagtctataaatc-aagtgcatagcaaaaacacaattcaactaatggataaacaagatcaagagagtaaagaaaagata 4510534  T
Q  667 acaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||||||| |||||||||    
T  4510535 acaacaccaagaaatgttcacccagtacggtccaac 4510570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 467 - 702
Target Start/End: Original strand, 4512181 - 4512412
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  4512181 tgttgtgaattc-ggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaataaccaaatgtaaataaaccacaa 4512277  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 666  Q
    ||||||| |||||| ||||  || |||| ||| | ||||||||||||||  ||||||||||| || ||||||||||||| ||||||||||||||||||||    
T  4512278 gcaataacaacaatatagacctagtctataaatc-aagtgcatagcaaaaacacaattcaactaatggataaacaagatcaagagagtaaagaaaagata 4512376  T
Q  667 acaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||||||| |||||||||    
T  4512377 acaacaccaagaaatgttcacccagtacggtccaac 4512412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 467 - 701
Target Start/End: Original strand, 34310496 - 34310736
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaat------tatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaa 560  Q
    |||||||||||||||| ||||| ||||||||||||||| |      ||||||| ||||||||||||||||||||||||||||||||||||||||| || |    
T  34310496 tgttgtgaattccggattcaaagttcacaccaatacaattacaaactatatgatgtgtggagcaagtatcaatgacaaccaataaccaaatgtaaataga 34310595  T
Q  561 ccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagg-ataaacaagataaagagagtaaaga 659  Q
    ||||||||||||| |||||| ||||  || ||||  ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  34310596 ccacaagcaataacaacaatatagacctagtcta-taaaccaagtgcatagcaaaaccacaattcaaccaaaggaataaacaagataaagagagtaaaga 34310694  T
Q  660 aaagataacaacaccaagaaatgttcacccagttcggtccaa 701  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  34310695 aaagataacaacaccaaagattgttcacccagttcggtccaa 34310736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 519 - 702
Target Start/End: Complemental strand, 3259322 - 3259141
Alignment:
Q  519 ggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagcc 618  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||| | | |||||||||| ||    
T  3259322 ggagcaagtatcaatgacaaccaataaccaaatgtaaataa-ccacaagcaataacaacaatctagatctaatctagaaaac-acgggcatagcaaaacc 3259225  T
Q  619 acaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  3259224 acaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacaccaggaaatgttcacccagttcggttcaac 3259141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 517 - 705
Target Start/End: Original strand, 8359157 - 8359340
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    |||||||||||||||||| ||||||| || ||||    |||||| ||||||||| || |||||||||||| ||||||||||||| ||||||||||||||     
T  8359157 gtggagcaagtatcaatggcaaccaacaatcaaa----agtaaatcacaagcaacaacaacaatctagatctaatctagaaaac-aagtgcatagcaaaa 8359251  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||  |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8359252 ccacaatctaaccaaaggataaacaagataatgagagtagagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 8359340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 467 - 702
Target Start/End: Original strand, 32357848 - 32358076
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||     |||||||||||    
T  32357848 tgttgtgaattc-ggacacaaatttcacaccaatacaaattatatgatgtgtggagtaagtatcaatgacaaccaacaaccaaa-----gtaaaccacaa 32357941  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagata 666  Q
    |||| || || ||| ||||  || | || ||  |||| |||||| |||| ||||||||||| ||| | ||||||||| ||||||||||||||||||||||    
T  32357942 gcaacaacaataatatagacctagtttataat-ccaattgcataacaaaaccacaattcaagcaaggaataaacaagttaaagagagtaaagaaaagata 32358040  T
Q  667 acaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||||||||||||||||||||||||||||    
T  32358041 acaacaccaagaaatgttcacccagttcggtccaac 32358076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 517 - 702
Target Start/End: Complemental strand, 2390615 - 2390428
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |||||||||||| ||||||||||||| || || ||||||||     
T  2390615 gtggagcaagtatcaatgacaaccaataaccaaatgtaaataa-ccacaatcaataacaacaatctagatctaatctagaaaacaaa-tgtatagcaaaa 2390518  T
Q  617 ccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---agataacaacaccaaga-aatgttcacccagttcggtccaac 702  Q
    ||||||| |||| |||||||||||||||||||||||||| |||||   | | ||||||||||||| | | |||||| |||||||||||||    
T  2390517 ccacaatccaacaaaaggataaacaagataaagagagtagagaaaaataaacaacaacaccaagagattattcacctagttcggtccaac 2390428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 517 - 702
Target Start/End: Complemental strand, 29609060 - 29608883
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    ||||||||||||||||||||||||||       |||||| ||| |||||||||| || |||||||||||| |||| |||||| ||||||||||| ||||     
T  29609060 gtggagcaagtatcaatgacaaccaa-------atgtaaataa-ccacaagcaacaacaacaatctagatctaatatagaaa-ccaagtgcatatcaaaa 29608970  T
Q  617 -ccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
     |||||||  || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||    
T  29608969 accacaatctaagcaaaggataaacaagataaagagagtagagaaaagataacaacaccaagaaatattcactcagttcggtccaac 29608883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 572 - 705
Target Start/End: Original strand, 22328282 - 22328414
Alignment:
Q  572 aaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaac 671  Q
    ||||||||||||||| ||||| ||||| ||||||||||| |||| |||||||  ||| |||| ||||||||||||||||||||| |||||||||||||||    
T  22328282 aaaaacaatctagatctaatcgagaaa-ccaagtgcataacaaaaccacaatcgaacaaaagaataaacaagataaagagagtagagaaaagataacaac 22328380  T
Q  672 accaagaaatgttcacccagttcggtccaacaat 705  Q
    ||||| |||| || ||||||||||||||||||||    
T  22328381 accaaaaaatatttacccagttcggtccaacaat 22328414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 480 - 664
Target Start/End: Original strand, 2360784 - 2360960
Alignment:
Q  480 ggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaa 579  Q
    ||||||||| |||||||||||||||| |||  || |||||||||||||||||||| ||||||| |||||||     ||||| ||||||||| || | |||    
T  2360784 ggactcaaaattcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaacaaccaaa-----gtaaatcacaagcaacaacatcaa 2360876  T
Q  580 tctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaaga 664  Q
    | ||||  || |||||||| ||||||||||| |||| ||||||||||||||| | |||||||||||||||||| |||||||||||    
T  2360877 tatagacctagtctagaaa-ccaagtgcatatcaaaaccacaattcaaccaaggaataaacaagataaagagaataaagaaaaga 2360960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 601 - 702
Target Start/End: Original strand, 48599255 - 48599356
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtcca 700  Q
    |||||||| |||||| | ||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48599255 caagtgcacagcaaaactacaatccaaccaaggaataaacaagataaagagagtaaagaaaagataacaacatcaagaaatgttcacccagttcggtcca 48599354  T
Q  701 ac 702  Q
    ||    
T  48599355 ac 48599356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 485 - 702
Target Start/End: Original strand, 6359762 - 6359974
Alignment:
Q  485 caaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctag 584  Q
    |||| |||||| ||||||||| |||  || ||||||||||||||||||||  |||||| |||||     ||||||||||||||||| || || ||| ||     
T  6359762 caaacttcacatcaatacaaactat--gatgtgtggagcaagtatcaatgggaaccaacaacca-----aagtaaaccacaagcaacaacaataatatat 6359854  T
Q  585 atataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagg-ataaacaagataaagagagtaaa-gaaaagataacaacaccaagaaa-t 681  Q
    |  || ||||  ||||||||||||||||||| ||||||| ||||  |||| |||||||||||||||| || ||| ||||||||||||||||||||||| |    
T  6359855 acctagtcta-taaaccaagtgcatagcaaaaccacaatccaacttaaggaataaacaagataaagaaagcaaatgaaaagataacaacaccaagaaatt 6359953  T
Q  682 gttcacccagttcggtccaac 702  Q
    ||| |||||||||| ||||||    
T  6359954 gttgacccagttcgatccaac 6359974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 550
Target Start/End: Complemental strand, 30814770 - 30814690
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 550  Q
    |||||||||||| ||||||||||||||||||| ||||||  |||||| |||||||||||||||||||| ||||||| |||||||    
T  30814770 tgttgtgaattc-ggactcaaatttcacaccagtacaaa--atatgatgtgtggagcaagtatcaatggcaaccaacaaccaaa 30814690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 479 - 550
Target Start/End: Complemental strand, 22270310 - 22270241
Alignment:
Q  479 cggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaa 550  Q
    ||||||||||||||||| ||||||||| |||  || |||||||||||||||||||| ||||||| |||||||    
T  22270310 cggactcaaatttcacagcaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaacaaccaaa 22270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 549
Target Start/End: Original strand, 22552448 - 22552485
Alignment:
Q  512 gaggtgtggagcaagtatcaatgacaaccaataaccaa 549  Q
    |||||||||||||||||||||||||||| |||||||||    
T  22552448 gaggtgtggagcaagtatcaatgacaactaataaccaa 22552485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 534
Target Start/End: Complemental strand, 6430496 - 6430432
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatg 534  Q
    |||||||||||| |||||||||  ||||||||||||||| |||  || ||||||||||||||||||||    
T  6430496 tgttgtgaattc-ggactcaaaactcacaccaatacaaactat--gatgtgtggagcaagtatcaatg 6430432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 137; Significance: 4e-71; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 467 - 701
Target Start/End: Original strand, 17793 - 18024
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||| ||||||| |||||||||||||||||||||||||| |||  || ||||| |||||||||||||  |||||||||| ||||||||| ||| ||||||    
T  17793 tgttatgaattctggactcaaatttcacaccaatacaaactat--gatgtgtgtagcaagtatcaatagcaaccaataatcaaatgtaaataa-ccacaa 17889  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaagaaaagat 665  Q
    ||||||| |||||||||||| ||||||||||||| || ||||||||||| |||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  17890 gcaataacaacaatctagatctaatctagaaaacaaa-tgcatagcaaaaccacaatctaaccaaaggaataaacaagataaagagagtaaagaaaagat 17988  T
Q  666 aacaacaccaagaaatgttcacccagttcggtccaa 701  Q
    |||||||||||||||||||||||||||||| |||||    
T  17989 aacaacaccaagaaatgttcacccagttcgatccaa 18024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 8e-66; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 468 - 702
Target Start/End: Complemental strand, 45727305 - 45727075
Alignment:
Q  468 gttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaag 567  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  45727305 gttgtgaattcag-actcaaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatggcaactaataaccaaatgtaaataaaccacaag 45727207  T
Q  568 caataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataa 667  Q
    ||| || || ||| ||||  || ||||  |||| |||||||||||||| ||||||| ||||||||| ||||  |||||||||||||||||||||||||||    
T  45727206 caacaacaataatatagacctagtcta-taaactaagtgcatagcaaaaccacaatccaaccaaagaataa--aagataaagagagtaaagaaaagataa 45727110  T
Q  668 caacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||| || |||||||||||||||||||||||||    
T  45727109 caacactaaaaaatgttcacccagttcggtccaac 45727075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 465 - 702
Target Start/End: Original strand, 35446675 - 35446906
Alignment:
Q  465 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccac 564  Q
    |||||||||||||| | |||||||||||||| ||||| ||| ||||||| |||||||||||||||||||  ||||||| |||||||     |||||||||    
T  35446675 tgtgttgtgaattctg-actcaaatttcacatcaatataaactatatgatgtgtggagcaagtatcaatcccaaccaacaaccaaa-----gtaaaccac 35446768  T
Q  565 aagcaataaaaacaatcta--gatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 662  Q
    |  ||| || |||||| ||  ||| || |||| ||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  35446769 actcaacaacaacaatatatagatctagtctataat--caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaagagagtaaagaaaa 35446866  T
Q  663 gataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35446867 gataacaacaccaagaaatgttcacccagttcggtccaac 35446906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 521 - 702
Target Start/End: Original strand, 42287953 - 42288133
Alignment:
Q  521 agcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccac 620  Q
    ||||| |||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||| ||| ||||    
T  42287953 agcaaatatcaatggcaaccaataaccaaatgtaaataa-ccacaagcaataacaacaatctagatctaatctagaaaac-aagtgcatagaaaaaccac 42288050  T
Q  621 aattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaa-tgttcacccagttcggtccaac 702  Q
    ||| ||||||| | ||||||||| ||||||| ||||||||||||||||| |||||||||| | || |||||||||||||||||    
T  42288051 aatccaaccaaggaataaacaagttaaagagggtaaagaaaagataacagcaccaagaaattattgacccagttcggtccaac 42288133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 522 - 702
Target Start/End: Complemental strand, 17450898 - 17450723
Alignment:
Q  522 gcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccaca 621  Q
    ||||||||||||||||||| |||||||||||||| |    ||||||||| || ||||||||| |  ||||||||||| |||||||||||||||| |||||    
T  17450898 gcaagtatcaatgacaaccgataaccaaatgtaaat----cacaagcaacaacaacaatctaaacctaatctagaaa-ccaagtgcatagcaaaaccaca 17450804  T
Q  622 attcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    ||  |||||||||||||||||||||||||||||| ||||||||||||||||||||  | |||||||| |||||||||||||    
T  17450803 atctaaccaaaggataaacaagataaagagagtacagaaaagataacaacaccaaagattgttcacctagttcggtccaac 17450723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 466 - 702
Target Start/End: Original strand, 1631520 - 1631754
Alignment:
Q  466 gtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 565  Q
    ||||||||||| | ||| |||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||| ||| |||||||||    
T  1631520 gtgttgtgaatccgggattcaaatttcacatcaatacaaactatatgatgtgtggagtaagtatcaatgacaaccaacaaccaaatataaataaaccaca 1631619  T
Q  566 agcaataaaaaca--atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaag 663  Q
    |||||||| ||||  || ||||  || |||    || |||||| |||||||| ||||||| |||  || | ||||||||||||||||||| || ||||||    
T  1631620 agcaataacaacaatatatagacttagtct--gtaatcaagtgtatagcaaaaccacaatccaa--aaggaataaacaagataaagagagcaaggaaaag 1631715  T
Q  664 ataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||| ||||||| ||||| ||||||||||||||    
T  1631716 ataacaacactaagaaatattcactcagttcggtccaac 1631754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 517 - 695
Target Start/End: Complemental strand, 7451448 - 7451270
Alignment:
Q  517 gtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaag 616  Q
    ||||||||||| |||||||||||||||||||   ||| | | ||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||     
T  7451448 gtggagcaagtttcaatgacaaccaataacctcttgtcaat-aaccacaagcaataacaacaatctagatctaatctagaaaa-caagtgcataacaaaa 7451351  T
Q  617 ccacaattcaaccaaaggataaacaagataa--agagagtaaagaaaagata-acaacaccaagaaatgttcacccagttcg 695  Q
    |||||||  |||||||| |||||||||||||  |||||||| |||||| ||| |||||||||| ||||||||||||||||||    
T  7451350 ccacaatcgaaccaaagaataaacaagataaagagagagtagagaaaa-atagacaacaccaataaatgttcacccagttcg 7451270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 600 - 705
Target Start/End: Complemental strand, 33648421 - 33648316
Alignment:
Q  600 ccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtcc 699  Q
    ||||||||||||||||  ||||||| ||| |||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||    
T  33648421 ccaagtgcatagcaaaatcacaattaaactaaagaataaacaagataaagagagtagagaaaagacaacaacaccaataaatgtttacccagttcggtcc 33648322  T
Q  700 aacaat 705  Q
    ||||||    
T  33648321 aacaat 33648316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 577 - 705
Target Start/End: Complemental strand, 24398332 - 24398202
Alignment:
Q  577 caatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaa---agataacaacac 673  Q
    ||||||| || ||||||||||| | |||||||||||||| || ||||   ||||| |  |||||||||||||||||||| |||||   ||||||||||||    
T  24398332 caatctaaatctaatctagaaa-ctaagtgcatagcaaaaccgcaatcggaccaa-gactaaacaagataaagagagtagagaaaaatagataacaacac 24398235  T
Q  674 caag-aaatgttcacccagttcggtccaacaat 705  Q
    |||| || |||||| ||||||||||||||||||    
T  24398234 caagtaattgttcagccagttcggtccaacaat 24398202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 559 - 705
Target Start/End: Original strand, 30217923 - 30218068
Alignment:
Q  559 aaccacaagcaataaaaacaat-ctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaa 657  Q
    |||||||||||| |||| || | ||||||  |||||||||| ||||||| | | || | |||||||  |||||||| ||||||||||||||||||||| |    
T  30217923 aaccacaagcaacaaaatcatttctagatccaatctagaaa-ccaagtgtaaaacacaaccacaatcaaaccaaagaataaacaagataaagagagtaga 30218021  T
Q  658 gaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    ||||| | | | ||||||| ||||||| ||| ||||| ||||||||||    
T  30218022 gaaaa-agagctacaccaaaaaatgtttaccgagttcagtccaacaat 30218068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 662
Target Start/End: Original strand, 42261384 - 42261464
Alignment:
Q  579 atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 662  Q
    |||||||| |||||||| || ||||||| |||||||| ||||||   |||||||  |||| |||||||||||||||||||||||    
T  42261384 atctagatctaatctagcaa-ccaagtgtatagcaaaaccacaaacaaaccaaa--ataatcaagataaagagagtaaagaaaa 42261464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 525
Target Start/End: Complemental strand, 29868241 - 29868182
Alignment:
Q  463 tttgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaa 525  Q
    |||||||||||||||| |||||||||||||||| |||||||||   ||||| |||||||||||    
T  29868241 tttgtgttgtgaattc-ggactcaaatttcacagcaatacaaa--ctatgatgtgtggagcaa 29868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 467 - 702
Target Start/End: Complemental strand, 7703 - 7473
Alignment:
Q  467 tgttgtgaattccgga-ctcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccaca 565  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||  || |||||||||||||||||||| ||||||| |||||||     ||||||||||    
T  7703 tgttgtgaatttcggaactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaacaaccaaa-----gtaaaccaca 7611  T
Q  566 agcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaag 663  Q
    ||||| || || ||| || | |  || |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7610 agcaacaacaataatatatagacctagtctataaa-ccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagataaagagagtaaagaaaag 7512  T
Q  664 ataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7511 ataacaacaccaagaaatgttcacccagttcggtccaac 7473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 6e-42; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 554 - 705
Target Start/End: Original strand, 27637487 - 27637637
Alignment:
Q  554 aagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagag 653  Q
    ||||||| ||||||||| || |||||| ||||  || |||| ||| |||||||||||||||| ||||||| |||| || | |||||||||||||||||||    
T  27637487 aagtaaatcacaagcaacaacaacaatatagacctagtctataaa-ccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaagagag 27637585  T
Q  654 taaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27637586 taaagaaaagataacaacaccaagaaatattcacccagttcggtccaacaat 27637637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 467 - 702
Target Start/End: Complemental strand, 5058423 - 5058191
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    ||||||||||| || |||||||||||||||||||| |||||||  || ||||||| |||||||||||| ||||||| |||||||  |  || ||||||||    
T  5058423 tgttgtgaatttcgaactcaaatttcacaccaatataaattat--gatgtgtggaacaagtatcaatggcaaccaacaaccaaaaat--gttaaccacaa 5058328  T
Q  567 gcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaaagccacaattcaaccaaagga-taaacaagataaagagagtaaagaaaag 663  Q
    |||| || |||||| || | |  || |||| ||   ||||||||||| ||| ||| ||| |||   ||||| ||||||||||||||||||||||||||||    
T  5058327 gcaacaacaacaatatatagacctagtctataat--caagtgcatagtaaaaccataatccaaagcaaggaataaacaagataaagagagtaaagaaaag 5058230  T
Q  664 ataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5058229 ataacaacaccaagaaatgttcacccagttcggtccaac 5058191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 601 - 702
Target Start/End: Complemental strand, 40147508 - 40147407
Alignment:
Q  601 caagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtcca 700  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  40147508 caagtgcataacaaaaccacaattcaaccaaaggataaacaagataaatagagtaaagaaaagataaaaacacaaaaaaatgttcacccagttcggtcca 40147409  T
Q  701 ac 702  Q
    ||    
T  40147408 ac 40147407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 467 - 702
Target Start/End: Complemental strand, 27015896 - 27015669
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||  |||| ||||||||||| ||| ||||| |||  || | ||||||||||||| |||| ||| ||| |||||||     ||||| |||||    
T  27015896 tgttgtgaatttgggacccaaatttcacagcaaaacaaactat--gatgggtggagcaagtattaatggcaatcaacaaccaaa-----gtaaatcacaa 27015804  T
Q  567 gcaataaaaacaatctagata--taatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaaga 664  Q
    |||| || |||||| || |||  || |||| ||   |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |    
T  27015803 gcaacaacaacaatatatatacctagtctataat--caagtgcatatcaaaaccacaattcaaccaaagcataaacaagataaagagagtaaagaaaaaa 27015706  T
Q  665 taacaacaccaagaaatgttcacccagttcggtccaac 702  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  27015705 taac-acaccaaaaaatgttcacccagttcggtccaac 27015669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 467 - 630
Target Start/End: Complemental strand, 40751351 - 40751195
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||||||||| |||| ||||||||||||||| |||  ||  ||||||| ||||||||||||||||||||||||||||    |||||||||||    
T  40751351 tgttgtgaattccggacttaaatctcacaccaatacaaactat--gatttgtggagtaagtatcaatgacaaccaataaccaaat----gtaaaccacaa 40751258  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaacca 630  Q
    ||||||| |||||| ||||  |||||||  ||||||||||||||||||| |||||||| |||||    
T  40751257 gcaataacaacaatatagacctaatcta-taaaccaagtgcatagcaaaaccacaatttaacca 40751195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 515 - 701
Target Start/End: Complemental strand, 213800 - 213613
Alignment:
Q  515 gtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaa 614  Q
    |||| ||||||||||||||  ||| ||||||||||||||||  |||||||||||||||| |||||| ||||  || ||||  || | |||||||||||||    
T  213800 gtgtagagcaagtatcaatagcaatcaataaccaaatgtaaa-aaaccacaagcaataacaacaatatagacctagtctattaa-ctaagtgcatagcaa 213703  T
Q  615 agccacaat-tcaaccaaaggataaacaagataa--agagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaa 701  Q
    | |||||||   || ||| | |||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  213702 aaccacaatcaaaagcaaggaataaacaagataaagagagagtaaaggaaagataacaacaccaagaaatgttcacccagttcggtccaa 213613  T

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Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 559 - 696
Target Start/End: Original strand, 16640818 - 16640956
Alignment:
Q  559 aaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaa--gagagtaa 656  Q
    |||||||||||| || || ||||||||| ||||||||||| | || |||||| |||| |||||||| ||| |||| |||| |||||||||  ||||| ||    
T  16640818 aaccacaagcaacaacaaaaatctagatttaatctagaaatcaaa-tgcataacaaaaccacaatttaactaaagaataagcaagataaatagagagcaa 16640916  T
Q  657 agaaaagataacaacaccaagaaatgttcacccagttcgg 696  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  16640917 agaaaagataacaacaccaagaaatgtttacccagttcgg 16640956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 467 - 630
Target Start/End: Complemental strand, 40763356 - 40763200
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaa 566  Q
    |||||||||||||||||| |||| ||||||||||| ||| |||  ||  |||||||||||||||||||||||||||||| |||||    |||||||| ||    
T  40763356 tgttgtgaattccggacttaaatctcacaccaatataaactat--gatctgtggagcaagtatcaatgacaaccaataatcaaat----gtaaaccataa 40763263  T
Q  567 gcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaacca 630  Q
    ||||||| |||||| ||||  |||||||  ||||||||||||||||||| ||| |||| |||||    
T  40763262 gcaataacaacaatatagacctaatcta-taaaccaagtgcatagcaaaaccataatttaacca 40763200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 598 - 705
Target Start/End: Complemental strand, 317014 - 316907
Alignment:
Q  598 aaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggt 697  Q
    ||||||||| | |||||| |||||||| |||||||| |||||||| ||||||||||||  ||||||| |||||||| ||||| |||| ||| ||||||||    
T  317014 aaccaagtgtaaagcaaaaccacaattgaaccaaagaataaacaaaataaagagagtagggaaaagagaacaacacaaagaattgtttaccaagttcggt 316915  T
Q  698 ccaacaat 705  Q
    ||||||||    
T  316914 ccaacaat 316907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 598 - 705
Target Start/End: Complemental strand, 4160850 - 4160743
Alignment:
Q  598 aaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggt 697  Q
    ||||||||| | |||||| ||| |||  |||||||| ||||||||||||| ||||  | ||||||||||||||||| || |||| || |||||||| |||    
T  4160850 aaccaagtgtaaagcaaaaccataatcgaaccaaagaataaacaagataatgagaacatagaaaagataacaacactaataaatatttacccagtttggt 4160751  T
Q  698 ccaacaat 705  Q
    ||||||||    
T  4160750 ccaacaat 4160743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 542
Target Start/End: Complemental strand, 28278652 - 28278592
Alignment:
Q  480 ggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaa 542  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||||||||||| |||||||    
T  28278652 ggactcaaatttcacaccaatacaaa--atatgatgtgtggagcaagtatcaatggcaaccaa 28278592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 467 - 542
Target Start/End: Complemental strand, 38747353 - 38747281
Alignment:
Q  467 tgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaa 542  Q
    |||||||||||  |||||||||||||||||||||||||| |||  || |||||||||||||||||||| |||||||    
T  38747353 tgttgtgaattt-ggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatggcaaccaa 38747281  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 705
Target Start/End: Complemental strand, 30793362 - 30793279
Alignment:
Q  619 acaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaacaat 705  Q
    |||||| |||||||| ||||||||||||||||||||| ||||   | ||  ||||||||||||||| |||  |||||||||||||||    
T  30793362 acaattaaaccaaagaataaacaagataaagagagtagagaa---acaaacacaccaagaaatgtttaccttgttcggtccaacaat 30793279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 464 - 549
Target Start/End: Complemental strand, 40147613 - 40147531
Alignment:
Q  464 ttgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatgacaaccaataaccaa 549  Q
    ||||||||||||||| |||||||||  ||||||||||||||| |||  || ||||||||||||||| ||||  |||||| ||||||    
T  40147613 ttgtgttgtgaattc-ggactcaaaactcacaccaatacaaactat--gatgtgtggagcaagtattaatggaaaccaacaaccaa 40147531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 13488571 - 13488517
Alignment:
Q  465 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggag 522  Q
    |||||||||||||| |||||||||| |||||||||||||||  |||||| ||||||||    
T  13488571 tgtgttgtgaattc-ggactcaaatctcacaccaatacaaa--atatgatgtgtggag 13488517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 516 - 702
Target Start/End: Complemental strand, 10820 - 10635
Alignment:
Q  516 tgtggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaataaaaacaatctagatataatctagaaaaccaagtgcatagcaaa 615  Q
    ||||||| ||||||||||||||||| ||||||||| | || ||| |||||||||| || |||||||||||| ||||||||||| | ||||| |||| |||    
T  10820 tgtggagaaagtatcaatgacaaccgataaccaaaagaaaataa-ccacaagcaacaacaacaatctagatttaatctagaaatc-aagtgtatagtaaa 10723  T
Q  616 gccacaattcaaccaaaggataaacaagataaa-gagagtaaagaaaagataacaacaccaagaaatgttcacccagttcggtccaac 702  Q
     | |||||  || ||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||    
T  10722 actacaatctaatcaaagaataaacaagataaaagagagtagaggaaagataacaacaccaagaaatgtttacccagttcggtccaac 10635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 705
Target Start/End: Original strand, 1291 - 1421
Alignment:
Q  575 aacaatctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaagataacaaca-c 673  Q
    |||||||||||| ||||||||||| ||||||| | || ||| |||||||  |||||||  ||||| ||||||||||||||||||| |||| || |||| |    
T  1291 aacaatctagatctaatctagaaa-ccaagtgtaaagtaaaaccacaatcaaaccaaaaaataaataagataaagagagtaaagagaagagaaaaacatc 1389  T
Q  674 caagaaatgttcacccagttcggtccaacaat 705  Q
     ||||| |||| ||||| || |||||||||||    
T  1390 aaagaattgtttacccaatttggtccaacaat 1421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 570
Target Start/End: Original strand, 3431 - 3482
Alignment:
Q  518 tggagcaagtatcaatgacaaccaataaccaaatgtaagtaaaccacaagcaa 570  Q
    ||||||||||||||||| ||||||||||| |||||||| | ||||||||||||    
T  3431 tggagcaagtatcaatggcaaccaataactaaatgtaaat-aaccacaagcaa 3482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 662
Target Start/End: Original strand, 490219 - 490299
Alignment:
Q  579 atctagatataatctagaaaaccaagtgcatagcaaagccacaattcaaccaaaggataaacaagataaagagagtaaagaaaa 662  Q
    |||||||| |||||||| || ||||||| |||||||| ||||||   |||||||  |||| |||||||||||||||||||||||    
T  490219 atctagatctaatctagcaa-ccaagtgtatagcaaaaccacaaacaaaccaaa--ataatcaagataaagagagtaaagaaaa 490299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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