View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8901_low_172 (Length: 233)
Name: NF8901_low_172
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_172 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0319 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0241 (1 HSPs) |
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| [»] scaffold0130 (1 HSPs) |
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|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0282 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0023 (2 HSPs) |
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| [»] scaffold0656 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
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| [»] scaffold0013 (4 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 1735317 - 1735501
Alignment:
| Q |
45 |
cagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgaggaga |
144 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| |||| || |||||||| ||||||| |
|
|
| T |
1735317 |
cagaaagctgtgttcgagatggttaagaagccagcaacagaacgaatttcacccccattgtcaattctgaagaaagatcattcaaaagaagacgaggaga |
1735416 |
T |
|
| Q |
145 |
tgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatgatgtcca |
229 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
1735417 |
tgacttcaaatttcacggaatctgacccaagtcttgacatagtctgtaatgtggtttccatcttgcctgtggaatacgatgtcca |
1735501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 17423032 - 17422845
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| |||| ||||||| ||||||| |
|
|
| T |
17423032 |
aagcagaaagaggtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaatcttgaagaaagatcatcccaaagaggatgagg |
17422933 |
T |
|
| Q |
142 |
agatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatgatgtcca |
229 |
Q |
| |
|
|||||||||| |||||||| | |||||| || || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
17422932 |
agatgacttcgaatttcacgggatctgacccgagcctcgacatagtttgcaatgtggtttctatcctacctgtggaatacgatgtcca |
17422845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 22348945 - 22348764
Alignment:
| Q |
39 |
ggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatg |
138 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||| ||||| ||| ||| |||||||||||||| | |||||| |||| ||||||| |||| |
|
|
| T |
22348945 |
ggcaagcagaaagttgtgttcgaaatggttaaaaaaccagcaatagagagaatctcacccccattgtcaattttaaagaaagatcatcccaaagaggatg |
22348846 |
T |
|
| Q |
139 |
aggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
| || |||||||||||||||| | |||||| || |||||||| || || |||||||||||||| ||||| |||||| |||| |
|
|
| T |
22348845 |
aagaaatgacttcaaatttcattggatctgaccccagtcttgatatcgtatgcaatgtggtttcgatcctacctgtgaaata |
22348764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 14342834 - 14342647
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||||||||| |||||||| || |||||||| ||||||| |
|
|
| T |
14342834 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacaaaaagaatttcacccccattgtcaattttgaagaaagattgttccaaagaggatgagg |
14342735 |
T |
|
| Q |
142 |
agatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatgatgtcca |
229 |
Q |
| |
|
||||||||||||||||||| |||||||| || || || ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14342734 |
agatgacttcaaatttcacggaatctgacccgagcctcgacatagtttgcaatgtggtttcaatcctgcctgtggaatacgatgtcca |
14342647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 18133720 - 18133578
Alignment:
| Q |
35 |
ggagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaa |
134 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
18133720 |
ggagggcaagcaaaaagttgtgttcgagatggttaagaaaccagcaacagagcgaatttcacccccattgtcaattctgaagaaagatcgttccaaagaa |
18133621 |
T |
|
| Q |
135 |
gatgaggagatgacttcaaatttcacagaatctgatccaagtc |
177 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
18133620 |
gatgaggagatgacttcaaatttcacggaatctgacccaagtc |
18133578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 208
Target Start/End: Complemental strand, 18171818 - 18171646
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||| |||||||| |||| |||| || | |
|
|
| T |
18171818 |
gagggtaagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagaaagaatttcgcccccattgtcaatcttgaagaaagatcatcccaaggagg |
18171719 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcct |
208 |
Q |
| |
|
|||| || |||||||| |||||||| | |||||| || ||||| |||||||| | |||||||||||| ||||| |
|
|
| T |
18171718 |
atgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtacaatgtggtttctatcct |
18171646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 14693412 - 14693217
Alignment:
| Q |
34 |
cggagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaaga |
133 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||| | || |||||||| |
|
|
| T |
14693412 |
cggaggacaagcagaaagccgtgttcgaaatggttaaaaaaccagcaacagagagaatttcacccccattgtcaatcttgaagaaagaccattccaaaga |
14693313 |
T |
|
| Q |
134 |
agatgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatgatgtcca |
229 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
14693312 |
ggataaggagatgacttcaaatttcacggaatctgacccaaacctcgacatagtttgcaatgtggtttctatcttgcctgtggaatacgatgtcca |
14693217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 10782166 - 10782360
Alignment:
| Q |
35 |
ggagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaa |
134 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||| |||||||||||| |||||| |||||||||| ||||||| |||| |||| | |||||| |
|
|
| T |
10782166 |
ggaggacaagcagaaagctgtgtttgagatggttaagaagccagcaacagagcgaatttcgcccccattgtcgattctgatgaaagatcatccaaaagaa |
10782265 |
T |
|
| Q |
135 |
gatgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatgatgtcca |
229 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10782266 |
gatgaggaaatgacttcgaatttcacagaatctgacccaagtcttgacatagtttgtaatgtggtttccattttgcctgtggaatatgatgtcca |
10782360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 7402161 - 7401977
Alignment:
| Q |
45 |
cagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgaggaga |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||| ||||||| || |||||||| |||||||||| |
|
|
| T |
7402161 |
cagaaagctgtgttcgaaatggttaagaaggcagcaacagaaagaatttcacccccattgtcaattttgaagaagtattgttccaaagaggatgaggaga |
7402062 |
T |
|
| Q |
145 |
tgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatgatgtcca |
229 |
Q |
| |
|
|||||||||||||||| |||| ||| || ||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
7402061 |
tgacttcaaatttcacggaatgtgacccgagtctcgacatagtttgcaatgtggtttcaatcctgcctgaggaatacgatgtcca |
7401977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 42 - 226
Target Start/End: Complemental strand, 13307054 - 13306870
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||| |||| ||||||| ||||| | |
|
|
| T |
13307054 |
aagcagaaaactgtgttcgaaatggttaagaaaccagcaacagagagaatctcacccccattgtcaattttgaagaaagatcatcccaaagaggatgaag |
13306955 |
T |
|
| Q |
142 |
agatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatgatgt |
226 |
Q |
| |
|
| |||||||| |||||||| | |||||| || ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |
|
|
| T |
13306954 |
atatgacttcgaatttcacgggatctgaccctagtctcgatatagtttgcaatgtggtttctatcctaccggtggaatacgatgt |
13306870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 10150798 - 10150985
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||||| ||||||| ||| ||| |||||||||||||| |||||||| |||| ||||||| | |
|
|
| T |
10150798 |
gagggcaagcgaaaagatgtgttcgaaatggttaaaaaaccagtcacagagagaatctcacccccattgtcaattttgaagaaagatcatcccaaagagg |
10150897 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatga |
223 |
Q |
| |
|
|||| || ||||||||||||||||| | |||||| || |||||||||||||| |||||||||||||| || || |||||||||||||| |
|
|
| T |
10150898 |
atgaagaaatgacttcaaatttcactggatctgaccccagtcttgacatagtatgcaatgtggtttctatactacctgtggaatatga |
10150985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 11371 - 11558
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||||| | |||||| |||| ||||||| | |
|
|
| T |
11371 |
gagggtaagcagaaagctgtgttcgaaatggttaaaaaaccagcaacagagagaatctcgcccccattgtcaattttaaagaaagatcatcccaaagagg |
11470 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatga |
223 |
Q |
| |
|
|||| || ||||||||||||||||| |||||||| || ||||| ||||||| |||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
11471 |
atgaagaaatgacttcaaatttcactgaatctgaccctagtctcaacatagtatgcaatgtggtttctatcctacctatggaatatga |
11558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 9650 - 9834
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||| ||| |||||||||||||| | |||||| | || ||||||| | |
|
|
| T |
9650 |
gagggtaagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattttaaagaaagaacatcccaaagagg |
9749 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
|||| || ||||||||||||||||| | |||||| || ||||| |||||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
9750 |
atgaagaaatgacttcaaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttctatcctacctgtggaata |
9834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 22638328 - 22638512
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||| ||||||| | |
|
|
| T |
22638328 |
gagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaagagg |
22638427 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
|||| || |||||||| |||||||| | |||||| || ||||| |||||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
22638428 |
atgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttctatcctaccggtggaata |
22638512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 23200813 - 23200629
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||| ||||||| | |
|
|
| T |
23200813 |
gagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaagagg |
23200714 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
|||| || |||||||| |||||||| | |||||| || ||||| || ||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
23200713 |
atgaagaaatgacttcgaatttcacgggatctgaccctagtctcgatatagtgtgcaatgtggtttctatcctaccggtggaata |
23200629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 23626442 - 23626258
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| || ||||||||||||| |||| ||| |||| |||| || | |
|
|
| T |
23626442 |
gagggtaagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaatattgaaaaaagatcatcccaaggagg |
23626343 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
||| || |||||||| |||||||| | |||||| || ||||| |||||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
23626342 |
atgtagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtgtgcaatgtggtttctatcctaccggtggaata |
23626258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 24911914 - 24912091
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||| ||| ||||||| |||| |||||||| | ||||| | || ||||||| ||||| | |
|
|
| T |
24911914 |
aagcagagagctgttttcgaaatggttaaaaaaccagcaacaaagagaatttcaccccc-ttgtcaatcttaaagaaggaccatcccaaagaggatgaag |
24912012 |
T |
|
| Q |
142 |
agatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
| ||||||||||||||||| | |||||| || ||||| |||||||| ||||||||||| || || || |||||||||| |
|
|
| T |
24912013 |
aaatgacttcaaatttcactggatctgaccccagtctcgacatagtatgcaatgtggtatcaattctatctgtggaata |
24912091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 126743 - 126559
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||| ||||||| | |
|
|
| T |
126743 |
gagggtaagcagaaggctgtgttcgaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaagagg |
126644 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
|||| || |||||||| |||||||| | |||||| || ||||| || ||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
126643 |
atgaagaaatgacttcgaatttcactggatctgaccctagtctcgatatagtgtgcaatgtggtttctatcctaccggtggaata |
126559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 13289551 - 13289364
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||| || |||||||||||||| | |||||| |||| ||||||| | |
|
|
| T |
13289551 |
gagggtaagcagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcgcccccattgtcaattttaaagaaagatcatcccaaagagg |
13289452 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatga |
223 |
Q |
| |
|
|||| || |||||||| |||||||| | |||||| || ||||| |||||||| |||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
13289451 |
atgaagaaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggtttctatcctacctttggaatatga |
13289364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 14772742 - 14772567
Alignment:
| Q |
45 |
cagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgaggaga |
144 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||| |||||| |||| ||||||| ||||| || | |
|
|
| T |
14772742 |
cagagagctgtattcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaagaaa |
14772643 |
T |
|
| Q |
145 |
tgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
|||||||||||||||| | |||||| || ||||| || ||||| ||||||||||| || ||||| ||||||||||| |
|
|
| T |
14772642 |
tgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcgatcctacctgtggaata |
14772567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 45 - 220
Target Start/End: Original strand, 11493 - 11668
Alignment:
| Q |
45 |
cagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgaggaga |
144 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| ||| ||| |||||||||||||| | |||||| |||| ||||||| ||||| || | |
|
|
| T |
11493 |
cagaaagctgtattcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattataaagaaagatcatcccaaagaggatgaagaaa |
11592 |
T |
|
| Q |
145 |
tgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
|||||||||||||||| | |||||| || |||||||| || || ||||||||||| || ||||| ||||||||||| |
|
|
| T |
11593 |
tgacttcaaatttcactggatctgaccccagtcttgatatcgtatgcaatgtggtctcaatcctacctgtggaata |
11668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 43155 - 43327
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||| |||||||| |||| |||| || | |
|
|
| T |
43155 |
gagggtaagcagaaagctgtgttcaaaatggttaagaaaccagcaacagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaggagg |
43254 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcct |
208 |
Q |
| |
|
|||| || ||||||| |||||||| | |||||| || ||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
43255 |
atgaagaactgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttctatcct |
43327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 26227 - 26405
Alignment:
| Q |
45 |
cagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaa-aatcactccaaagaagatgaggag |
143 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||| ||| ||| |||||||||||||| |||||||| | || || ||| || ||||| ||| |
|
|
| T |
26227 |
cagaaagctgtgttcgaaatggttaaaaagccagcaacagagagaatctcacccccattgtcaattttgaagaaagactctct-caaggaggatgaagag |
26325 |
T |
|
| Q |
144 |
atgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatga |
223 |
Q |
| |
|
|||||||| |||||||| | |||||| || ||||| |||||||| ||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
26326 |
atgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaacgtggtgtccatcctacctgtggaatatga |
26405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 22806016 - 22805838
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
||||||| |||||| || ||||||||||| |||||||||||||||| ||| ||| |||||||||||||||| |||||| |||| ||||||| ||||| | |
|
|
| T |
22806016 |
aagcagagagctgtatttgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaag |
22805917 |
T |
|
| Q |
142 |
agatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
| ||||||||||||||||| | |||||| || | ||| || ||||| ||||||||||| || ||||| ||||||||||| |
|
|
| T |
22805916 |
aaatgacttcaaatttcactggatctgaccccaatctcgatatagtatgcaatgtggtctcaatcctacctgtggaata |
22805838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 41380508 - 41380414
Alignment:
| Q |
35 |
ggagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactcca |
129 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||| |||| |||| |
|
|
| T |
41380508 |
ggagggcaagcagaaagctgtgttcgagatggttaagaagccagcaacagagcgaatttcacccccattgtcaattttgaagaaagatcattcca |
41380414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 19035362 - 19035178
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||| |||||||||||||||| ||| ||||| |||||||||||| ||||||||||| | ||||| | | |
|
|
| T |
19035362 |
gagggcaagcaaaaagctatgttcgaaatagttaaaaaaccagcaacagagagaatctcatctccattgtcaattttgaagaaaaataatcccaaaaagg |
19035263 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
|||| || |||||||| |||||||| | |||||| || |||||||| || | ||||||||||| || ||||| ||||||||||| |
|
|
| T |
19035262 |
atgaagaaatgacttcgaatttcactggatctgaccccagtcttgatattatatgcaatgtggtctcgatcctacctgtggaata |
19035178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 202
Target Start/End: Original strand, 23435115 - 23435281
Alignment:
| Q |
36 |
gagggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaag |
135 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||||||||||| ||||| ||| || |||||||||||||| |||||||| |||| |||| || | |
|
|
| T |
23435115 |
gagggtaagcagaaggttgtgttcgaaatggttaagaaaccagcaatagagagaatctcgcccccattgtcaattttgaagaaagatcatcccaaggagg |
23435214 |
T |
|
| Q |
136 |
atgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttc |
202 |
Q |
| |
|
|||| || |||||||| |||||||| | |||||| || ||||| |||||||| |||||||||||||| |
|
|
| T |
23435215 |
atgaagaaatgacttcgaatttcacgggatctgaccctagtctcgacatagtgtgcaatgtggtttc |
23435281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 220
Target Start/End: Complemental strand, 126943 - 126760
Alignment:
| Q |
37 |
agggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaaga |
136 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||||| ||||||||| ||| ||| ||||||||| |||| | |||||| |||| |||| || || |
|
|
| T |
126943 |
agggaaagcagaaagcggtgttcgaaatggttaaaaaaccaacaacagagagaatctcacccccattgtgaattttaaagaaagatcatcccaatgagga |
126844 |
T |
|
| Q |
137 |
tgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
||| || ||||||||||||||||| | |||||| || |||||||| || || ||||||||||| || ||||| ||||||||||| |
|
|
| T |
126843 |
tgaagaaatgacttcaaatttcacgggatctgaccccagtcttgatatcgtatgcaatgtggtctcgatcctacctgtggaata |
126760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 220
Target Start/End: Original strand, 67003 - 67163
Alignment:
| Q |
60 |
gaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgaggagatgacttcaaatttca |
159 |
Q |
| |
|
||||||||| | |||||||||||||||| ||| ||| |||||||||||||||| |||||| |||| ||||||| ||||| || |||||||||||||||| |
|
|
| T |
67003 |
gaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaagaaatgacttcaaatttca |
67102 |
T |
|
| Q |
160 |
cagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
| | |||||| || ||||| || ||||| ||||||||||| || ||||| ||||||||||| |
|
|
| T |
67103 |
ctggatctgaccccagtctcgatatagtatgcaatgtggtctcaatcctacctgtggaata |
67163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 29633 - 29816
Alignment:
| Q |
37 |
agggcaagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaaga |
136 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| |||||||| | ||||| ||| ||| |||| ||||||||| |||||||| |||| ||||||| || |
|
|
| T |
29633 |
agggcaagcaaaaagatgtgttcgaaatggttaaaaaaccagccatagagagaatctcacccccgttgtcaattttgaagaaagatcatcccaaagagga |
29732 |
T |
|
| Q |
137 |
tgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
||| || ||||| ||| ||||||| | |||||| || || || |||||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
29733 |
tgaagaaatgacctcagatttcaccggatctgaccccagcctagacatagtatgcaatgtggtttctatcctaccagtggaata |
29816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 5716 - 5538
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
||||||| || ||| || ||||||||| | |||||||||||||||| ||| ||| |||||||||||||||| |||||| |||| ||||||| ||||| | |
|
|
| T |
5716 |
aagcagagagttgtatttgaaatggtttaaaaaccagcaacagagagaatctcacccccattgtcaattctaaagaaagatcatcccaaagaggatgaag |
5617 |
T |
|
| Q |
142 |
agatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
| ||||||||||||||||| | |||||| || ||||| || ||||| ||||||||||| || || || ||||||||||| |
|
|
| T |
5616 |
aaatgacttcaaatttcactggatctgaccccagtctcgatatagtatgcaatgtggtctcaattctacctgtggaata |
5538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 21511006 - 21511184
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||| | |||||| |||| |||| || ||||| | |
|
|
| T |
21511006 |
aagcagaaagcggtgttcgaaatggttaaaaaaccagcaacagagagaatctcacccccattgtcaattttaaagaaagatcatcccaaggaggatgaag |
21511105 |
T |
|
| Q |
142 |
agatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
| ||||||||||||||||| | |||||| || |||||||| || | ||||||||||| || ||| | | ||||||||| |
|
|
| T |
21511106 |
aaatgacttcaaatttcactggatctgaccccagtcttgatatcatatgcaatgtggtctcgatcttacttgtggaata |
21511184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 223
Target Start/End: Complemental strand, 37768 - 37590
Alignment:
| Q |
45 |
cagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgaggaga |
144 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||| ||| ||||||| |||||||||||||| |||||||| | |||| || ||||| || | |
|
|
| T |
37768 |
cagaaagctgtgttcgaaatggttaaaaagccagcaacatagagaatttcacccccattgtcaattttgaagaaagactttcccaaggaggatgaagata |
37669 |
T |
|
| Q |
145 |
tgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatga |
223 |
Q |
| |
|
||||||| |||||||| | |||||| || ||||| |||||||| || || ||||| || ||||| |||||||||||||| |
|
|
| T |
37668 |
tgacttcgaatttcactggatctgaccctagtctcgacatagtatgtaacgtggtgtctatcctacctgtggaatatga |
37590 |
T |
|
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Target: scaffold0026 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 42 - 220
Target Start/End: Complemental strand, 139151 - 138973
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||| ||| || ||| | || |||||||| | |||||| | || ||||||| ||||| | |
|
|
| T |
139151 |
aagcagagagctgtattcgaaatggttaaaaaaccagcaacaaagaggatctcacctcccttgtcaatcttaaagaaagaccatcccaaagaggatgaag |
139052 |
T |
|
| Q |
142 |
agatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
| |||||||| |||||||| | ||||| || ||||| |||||||| |||||||||||||| ||||| ||||| ||||| |
|
|
| T |
139051 |
aaatgacttcgaatttcactgggtctgaccctagtctcgacatagtatgcaatgtggtttcaatcctacctgtagaata |
138973 |
T |
|
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Target: scaffold0023 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 65268 - 65376
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||| ||| | | |||||||||||||| | |||||| |||| ||||||| ||||| | |
|
|
| T |
65268 |
aagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattttaaagaaagatcatcccaaagaggatgaag |
65367 |
T |
|
| Q |
142 |
agatgactt |
150 |
Q |
| |
|
| ||||||| |
|
|
| T |
65368 |
aaatgactt |
65376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 74446 - 74554
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||| ||| | | |||||||||||||| | |||||| |||| ||||||| ||||| | |
|
|
| T |
74446 |
aagcagaaagttgtgttcgaaatggttaaaaaaccagcaacagagagaatctaacccccattgtcaattttaaagaaagatcatcccaaagaggatgaag |
74545 |
T |
|
| Q |
142 |
agatgactt |
150 |
Q |
| |
|
| ||||||| |
|
|
| T |
74546 |
aaatgactt |
74554 |
T |
|
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Target: scaffold0656 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0656
Description:
Target: scaffold0656; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 5065 - 5235
Alignment:
| Q |
50 |
agctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgaggagatgact |
149 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||| ||| ||| |||| |||||||| | |||||| | || |||| || ||||| || |||||| |
|
|
| T |
5065 |
agctgttttcgaaatggttaaaaagccagcaacagagagaatctcaccccccttgtcaatcttaaagaaagaccatcccaaggaggatgaagaaatgact |
5164 |
T |
|
| Q |
150 |
tcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaata |
220 |
Q |
| |
|
|| |||||||| | |||||| | ||||| |||||||| ||||||||||| || || || ||||||||||| |
|
|
| T |
5165 |
tcgaatttcactggatctgacctcagtctcgacatagtatgcaatgtggtatcaattctacctgtggaata |
5235 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 159243 - 159086
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaattctgaagaaaaatcactccaaagaagatgagg |
141 |
Q |
| |
|
||||||||||| || || ||||||||||| || ||||||||||| | ||| ||| | || || ||||| |||||||||| || |||| || ||||| | |
|
|
| T |
159243 |
aagcagaaagccgtttttgaaatggttaaaaagccagcaacagaaagaatctcaccgcccttatcaatcttgaagaaaaaccatcccaaggaggatgaag |
159144 |
T |
|
| Q |
142 |
agatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggt |
199 |
Q |
| |
|
| |||||||| |||||||| | |||||| || ||||| |||||||| ||||||||||| |
|
|
| T |
159143 |
aaatgacttcgaatttcactggatctgaccctagtctcgacatagtatgcaatgtggt |
159086 |
T |
|
Back To:
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Target: scaffold0107 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 1874 - 1941
Alignment:
| Q |
42 |
aagcagaaagctgtgttcgaaatggttaagaaaccagcaacagagaaaatttcatccccattgtcaat |
109 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||||||| ||| ||| |||| |||||||| |
|
|
| T |
1874 |
aagcagagagctgttttcgaaatggttaaaaaaccagcaacagagagaatctcaccccccttgtcaat |
1941 |
T |
|
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Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 42379 - 42285
Alignment:
| Q |
105 |
tcaattctgaagaaaaatcactccaaagaagatgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggt |
199 |
Q |
| |
|
|||||| ||||||||||||| | || || ||||| || ||||| || |||||||| ||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
42379 |
tcaattttgaagaaaaatcatcctaaggaggatgaagaaatgacgtcgaatttcactgaatctgatccaagtctcgatatagtgtgcaatgtggt |
42285 |
T |
|
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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 83915 - 83970
Alignment:
| Q |
144 |
atgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggt |
199 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||| ||||||||||| |
|
|
| T |
83915 |
atgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt |
83970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 121587 - 121642
Alignment:
| Q |
144 |
atgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggt |
199 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||| ||||||||||| |
|
|
| T |
121587 |
atgacgtcaaatttcacagaatctgacccaagtctcgatatagtatgcaatgtggt |
121642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 75471 - 75541
Alignment:
| Q |
129 |
aaagaagatgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggt |
199 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||||||||||| ||||||| || ||||| ||||||||||| |
|
|
| T |
75471 |
aaagaggatgaagaaatgacgtcaaatttcacagaatctgactcaagtctcgatatagtatgcaatgtggt |
75541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 148842 - 148924
Alignment:
| Q |
144 |
atgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatgatgt |
226 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| || ||||| ||||||||||| || || ||| ||| ||||||||||| |
|
|
| T |
148842 |
atgacgtcaaatttcacaaaatctgacccaagtctcgatatagtatgcaatgtggtatcaatattgcatgttgaatatgatgt |
148924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 33649 - 33748
Alignment:
| Q |
127 |
ccaaagaagatgaggagatgacttcaaatttcacagaatctgatccaagtcttgacatagtttgcaatgtggtttccatcctgcctgtggaatatgatgt |
226 |
Q |
| |
|
||||||| ||||| || |||||||| ||||||| | |||||| || ||||| |||||||| ||||||||||| || | ||||||||||||| ||||| |
|
|
| T |
33649 |
ccaaagaggatgaagaaatgacttcgaatttcattggatctgaccccagtctcgacatagtgtgcaatgtggtgtcagttttgcctgtggaatacgatgt |
33748 |
T |
|
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