View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_175 (Length: 227)

Name: NF8901_low_175
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_175
NF8901_low_175
[»] chr7 (26 HSPs)
chr7 (47-218)||(21873762-21873933)
chr7 (46-218)||(7791526-7791698)
chr7 (46-218)||(47065152-47065324)
chr7 (46-218)||(32541397-32541568)
chr7 (46-218)||(42094766-42094938)
chr7 (105-218)||(10533288-10533401)
chr7 (74-218)||(34592355-34592500)
chr7 (105-218)||(46321383-46321496)
chr7 (74-218)||(46924550-46924694)
chr7 (75-218)||(8214958-8215101)
chr7 (46-218)||(32661585-32661757)
chr7 (46-218)||(40704723-40704895)
chr7 (74-218)||(40995835-40995978)
chr7 (112-216)||(7901115-7901219)
chr7 (46-218)||(39073656-39073828)
chr7 (139-218)||(40994209-40994288)
chr7 (139-218)||(43246336-43246415)
chr7 (46-218)||(19699668-19699839)
chr7 (139-218)||(38875455-38875534)
chr7 (46-218)||(35924777-35924949)
chr7 (105-218)||(26015161-26015274)
chr7 (46-218)||(27325512-27325683)
chr7 (46-218)||(38282931-38283104)
chr7 (46-218)||(21278268-21278441)
chr7 (46-189)||(25877481-25877624)
chr7 (74-190)||(47778798-47778914)
[»] chr8 (26 HSPs)
chr8 (46-218)||(11588748-11588920)
chr8 (46-218)||(34918084-34918256)
chr8 (46-218)||(37578871-37579043)
chr8 (46-218)||(43663605-43663777)
chr8 (74-218)||(24822016-24822160)
chr8 (74-218)||(39365930-39366074)
chr8 (46-218)||(15840441-15840613)
chr8 (46-218)||(17602294-17602467)
chr8 (46-218)||(26290033-26290205)
chr8 (46-218)||(26303290-26303462)
chr8 (46-218)||(26315284-26315456)
chr8 (138-218)||(16633891-16633971)
chr8 (139-218)||(5599240-5599319)
chr8 (139-218)||(5635956-5636035)
chr8 (139-218)||(26121958-26122037)
chr8 (46-218)||(3032198-3032370)
chr8 (112-218)||(8376867-8376973)
chr8 (111-216)||(34564383-34564488)
chr8 (105-218)||(35605987-35606100)
chr8 (139-218)||(42512831-42512910)
chr8 (105-204)||(23356615-23356714)
chr8 (74-218)||(3136525-3136670)
chr8 (46-183)||(26294413-26294550)
chr8 (46-183)||(26307670-26307807)
chr8 (46-189)||(12713392-12713535)
chr8 (139-218)||(5988797-5988877)
[»] chr5 (17 HSPs)
chr5 (46-218)||(6468969-6469141)
chr5 (75-218)||(25085649-25085792)
chr5 (105-218)||(25143621-25143734)
chr5 (74-218)||(33281499-33281643)
chr5 (74-218)||(31510738-31510881)
chr5 (46-218)||(37866522-37866694)
chr5 (46-218)||(38759660-38759832)
chr5 (75-218)||(43292978-43293121)
chr5 (105-218)||(4155469-4155582)
chr5 (47-218)||(9066330-9066500)
chr5 (105-218)||(29921089-29921202)
chr5 (140-218)||(13145250-13145328)
chr5 (105-218)||(19034040-19034159)
chr5 (46-218)||(19616878-19617041)
chr5 (74-190)||(43517586-43517702)
chr5 (75-178)||(24559771-24559874)
chr5 (139-178)||(24600804-24600843)
[»] chr2 (20 HSPs)
chr2 (46-218)||(35896402-35896574)
chr2 (74-218)||(37094710-37094854)
chr2 (46-218)||(25852653-25852825)
chr2 (74-218)||(32550906-32551050)
chr2 (46-218)||(42343608-42343778)
chr2 (46-218)||(2389935-2390106)
chr2 (46-218)||(21658567-21658738)
chr2 (105-218)||(43577579-43577692)
chr2 (46-218)||(927645-927816)
chr2 (105-218)||(3178887-3179000)
chr2 (105-218)||(13195513-13195626)
chr2 (74-218)||(1520865-1521009)
chr2 (46-218)||(39697079-39697251)
chr2 (105-218)||(40811048-40811161)
chr2 (105-218)||(44144056-44144169)
chr2 (139-218)||(1482513-1482592)
chr2 (139-218)||(34202951-34203030)
chr2 (153-218)||(27980312-27980377)
chr2 (153-218)||(28066842-28066907)
chr2 (105-218)||(10639383-10639496)
[»] chr1 (26 HSPs)
chr1 (46-218)||(2481926-2482098)
chr1 (74-218)||(44722552-44722696)
chr1 (46-218)||(34270037-34270209)
chr1 (46-218)||(34276272-34276444)
chr1 (47-218)||(40535923-40536094)
chr1 (74-218)||(2137663-2137807)
chr1 (74-218)||(11172647-11172791)
chr1 (46-211)||(15941497-15941662)
chr1 (46-218)||(24317826-24317997)
chr1 (46-218)||(39568652-39568823)
chr1 (105-218)||(39983017-39983130)
chr1 (46-218)||(28852103-28852275)
chr1 (74-218)||(52043698-52043841)
chr1 (46-221)||(20582240-20582414)
chr1 (138-218)||(50728502-50728582)
chr1 (139-218)||(26163888-26163967)
chr1 (74-214)||(33010010-33010150)
chr1 (74-218)||(49823846-49823990)
chr1 (46-218)||(6653756-6653927)
chr1 (46-218)||(42948837-42949009)
chr1 (112-218)||(51676555-51676660)
chr1 (105-218)||(14246574-14246687)
chr1 (105-218)||(52025297-52025410)
chr1 (139-218)||(18909821-18909900)
chr1 (46-218)||(40400671-40400844)
chr1 (46-181)||(13234595-13234730)
[»] chr6 (10 HSPs)
chr6 (46-218)||(7141860-7142032)
chr6 (46-218)||(18894391-18894563)
chr6 (46-218)||(25332153-25332325)
chr6 (74-218)||(6625980-6626124)
chr6 (46-218)||(6167252-6167423)
chr6 (75-218)||(13889339-13889482)
chr6 (105-211)||(29121690-29121796)
chr6 (74-183)||(25331634-25331743)
chr6 (139-218)||(3095193-3095273)
chr6 (139-218)||(29629858-29629938)
[»] chr4 (25 HSPs)
chr4 (46-218)||(19873356-19873528)
chr4 (46-218)||(20434759-20434931)
chr4 (46-218)||(28405715-28405887)
chr4 (46-218)||(43829524-43829695)
chr4 (74-218)||(42349347-42349491)
chr4 (46-218)||(42723410-42723582)
chr4 (46-218)||(52912429-52912601)
chr4 (46-218)||(55214872-55215044)
chr4 (46-218)||(55220514-55220686)
chr4 (46-218)||(56363350-56363522)
chr4 (46-218)||(20738394-20738565)
chr4 (46-218)||(56017717-56017889)
chr4 (113-218)||(38291228-38291333)
chr4 (139-218)||(23894557-23894636)
chr4 (74-218)||(46563781-46563924)
chr4 (46-218)||(37233441-37233614)
chr4 (139-218)||(39539829-39539908)
chr4 (46-218)||(55182796-55182968)
chr4 (105-218)||(614474-614590)
chr4 (112-218)||(53874379-53874485)
chr4 (105-218)||(52839050-52839163)
chr4 (46-218)||(1356321-1356494)
chr4 (46-218)||(10541383-10541557)
chr4 (46-177)||(5098717-5098848)
chr4 (175-218)||(25858309-25858352)
[»] chr3 (22 HSPs)
chr3 (46-218)||(22781077-22781249)
chr3 (46-218)||(33967566-33967738)
chr3 (46-218)||(37970941-37971113)
chr3 (46-214)||(10840662-10840830)
chr3 (46-214)||(41070535-41070703)
chr3 (74-218)||(25711575-25711719)
chr3 (74-218)||(38871772-38871916)
chr3 (46-218)||(32236947-32237119)
chr3 (74-218)||(33711980-33712123)
chr3 (46-214)||(36430967-36431135)
chr3 (112-218)||(20834845-20834951)
chr3 (139-218)||(4515366-4515445)
chr3 (46-218)||(4044045-4044217)
chr3 (75-218)||(24395846-24395989)
chr3 (46-218)||(20656522-20656694)
chr3 (46-181)||(7149235-7149370)
chr3 (74-218)||(20048955-20049100)
chr3 (139-218)||(40585484-40585564)
chr3 (46-218)||(672720-672883)
chr3 (105-218)||(10999078-10999192)
chr3 (105-218)||(53974929-53975032)
chr3 (139-178)||(6267664-6267703)
[»] scaffold0062 (1 HSPs)
scaffold0062 (46-218)||(41174-41346)
[»] scaffold0438 (1 HSPs)
scaffold0438 (46-218)||(1370-1542)
[»] scaffold0391 (1 HSPs)
scaffold0391 (139-218)||(4659-4738)
[»] scaffold0368 (1 HSPs)
scaffold0368 (46-218)||(14510-14682)
[»] scaffold0007 (1 HSPs)
scaffold0007 (139-218)||(156453-156522)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 21873762 - 21873933
Alignment:
Q  47 ttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaacc 146  Q
    ||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||||||    
T  21873762 ttttctatttacaccccatgtttttctggttacacccaaattttcttaaaacttttttataataccaaaattgcccttttatataaattttcttaaaacc 21873861  T
Q  147 ctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  21873862 ctaattttattcattgtcggtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 21873933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 7791698 - 7791526
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||    
T  7791698 tttttctatttacaccccatgattttctggttacacccaaattttcttaaaagttttttataatatcaaaattgcccttttatataaattttcttaaaac 7791599  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  7791598 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 7791526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 47065152 - 47065324
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||| ||        ||||| ||||||||||||||||||||        |||||||    
T  47065152 tttttctatttacaccccatgtttttctggttacacccaaattttctttaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 47065251  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  47065252 cctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 47065324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 32541397 - 32541568
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  32541397 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgcccttttatataaattttcttaaaac 32541495  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  32541496 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 32541568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 42094766 - 42094938
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       | ||||||||||||||| |||||        ||||| ||||||||||||||||||||        |||||||    
T  42094766 tttttctatttacaccccatgtttttctgattacacccaaatttttttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 42094865  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42094866 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 42094938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 10533401 - 10533288
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  10533401 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 10533302  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  10533301 aaacaatttgatgt 10533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 34592500 - 34592355
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttt-aaaaccctaattttattcattgtcggtgagtt 172  Q
    ||||||||||||||||||||||         ||||| ||||||||||||||||||||       ||| |||||||||||||||||||||||| |||||||    
T  34592500 ggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataatttttttttaaaaccctaattttattcattgtcagtgagtt 34592401  T
Q  173 tcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  34592400 tcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34592355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 46321383 - 46321496
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  46321383 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 46321482  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  46321483 aaacaatttgatgt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 46924694 - 46924550
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    ||||| |||||||||||||||||        ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  46924694 ggttatacccaaattttcttaaattatctttataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 46924595  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||    
T  46924594 caccctctttcaccccacaaagtgatcgatcaaacaatttgatgt 46924550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 8214958 - 8215101
Alignment:
Q  75 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 174  Q
    ||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||| ||||||||| ||||||| |||||||||    
T  8214958 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaaccttaattttatacattgtcagtgagtttc 8215057  T
Q  175 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||| |||||| |||||||||||||||||||||||||||    
T  8215058 accctctttcaccccacaaagcgatcgatcaaacaatttgatgt 8215101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 32661585 - 32661757
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| |||||||||||||| |||||        ||||||     
T  32661585 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatttataataccaaaattgcccttctatataaattttcttaaaag 32661684  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  32661685 cctaattttgttcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 32661757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 40704723 - 40704895
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  40704723 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatt-ataataccaaaattgcccttttatataaattttcttaaaac 40704821  T
Q  146 cctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  40704822 cctaattttattcattgtcagtgagtttcaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 40704895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 40995978 - 40995835
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| ||||||||    
T  40995978 ggttacacccaaattttcttaaaaaaaatt-ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 40995880  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  40995879 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 40995835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 7901219 - 7901115
Alignment:
Q  112 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 211  Q
    |||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  7901219 caaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 7901120  T
Q  212 ttgat 216  Q
    |||||    
T  7901119 ttgat 7901115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 39073656 - 39073828
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  39073656 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 39073755  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccc-cataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||  ||||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  39073756 cctaattttattcattgtca-tgagtttcaccctctttcaccctcacaaagcgatcgatcaaacaatttgatgt 39073828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 40994209 - 40994288
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  40994209 ttaaaaccctaattttattcattgtcggtgagtttcaccctctttcaccccacaaagcgaacgatcaaacaatttgatgt 40994288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 43246336 - 43246415
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43246336 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 43246415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 19699839 - 19699668
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  19699839 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 19699740  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||| ||||| || ||||||||||||||||||    
T  19699739 cctaattttattcattgtcagtgagtttca-cctctttcaccccacaaagctattgatcaaacaatttgatgt 19699668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 38875455 - 38875534
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38875455 ttaaaaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38875534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 35924949 - 35924777
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||    
T  35924949 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaattttcttaaaac 35924850  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||| ||| |||||||| ||| ||||||||||    
T  35924849 cctaattttattcattgtcagtgagtttcaccatctttcaccccacaaaacgatcgataaaaaaatttgatgt 35924777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 26015161 - 26015274
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| |||||||| |||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||| |||    
T  26015161 ataataccaaaattacccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcactccacaaagcgatcaatc 26015260  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  26015261 aaacaatttgatgt 26015274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 27325683 - 27325512
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||| ||||||||||        |||||||    
T  27325683 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgtccttttatataaattttcttaaaac 27325585  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    | ||||||||||||||||| |||||||||||||||||| |||||| |||| |||||||||||||||| |||||    
T  27325584 cataattttattcattgtcagtgagtttcaccctctttcaccccacaaagtgatcgatcaaacaattcgatgt 27325512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 38282931 - 38283104
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  38282931 tttttctatttacaccccatgtttgtctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 38283030  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  38283031 cctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 38283104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 21278268 - 21278441
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||| |||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  21278268 tttttctatttacaccccatgtttttctggttacacctaaattttcttaaaatttttttataataccaaaattgcccttttatataaattttcttaaaac 21278367  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  21278368 cctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 21278441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 25877624 - 25877481
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||||||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||    
T  25877624 tttttctatttacacctcatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaattttcttaaaac 25877525  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttacccc 189  Q
    |||||||||||||||||||  ||||||||||||||||| |||||    
T  25877524 cctaattttattcattgtcactgagtttcaccctctttcacccc 25877481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 47778798 - 47778914
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| |||||||||  |||||||||        ||||||||||||||||||||||||||  |||||||    
T  47778798 ggttacacccaaattttcttaaaagttttttataataccaaaattgtacttttatataaattttcttaaaaccctaattttattcattgtcactgagttt 47778897  T
Q  174 caccctcttttacccca 190  Q
    |||||||||| ||||||    
T  47778898 caccctctttcacccca 47778914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 11588920 - 11588748
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  11588920 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 11588821  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  11588820 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 11588748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 34918256 - 34918084
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||    
T  34918256 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataataccaaaattgtccttttatataaattttcttaaaac 34918157  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  34918156 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34918084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 37579043 - 37578871
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  37579043 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 37578944  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
     |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37578943 tctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 37578871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 43663605 - 43663777
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  ||||||||| |||||||||        |||||||    
T  43663605 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataatatcaaaattgctcttttatataaattttcttaaaac 43663704  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43663705 cctaattttattcattgtcggtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 43663777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 24822016 - 24822160
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  24822016 ggttacacccaaattttcttaaaaaaaatttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcggtgagttt 24822115  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||    
T  24822116 caccctctttcgccccacaaagcgatcgatcaaacaatttgatgt 24822160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 39366074 - 39365930
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| | ||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  39366074 ggttacacccaaattttcttaaaatttttttataatactaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 39365975  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  39365974 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 39365930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 15840613 - 15840441
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||  ||||||||        |||||||    
T  15840613 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcttttttatataaattttcttaaaac 15840514  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  15840513 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 15840441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 17602467 - 17602294
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| | ||||||||||||||||||        |||||||    
T  17602467 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataatactaaaattgcccttttatataaattttcttaaaac 17602368  T
Q  146 cctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  17602367 cctaattttattcattgtcagtgagtttcaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 17602294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 26290033 - 26290205
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  26290033 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 26290132  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  26290133 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 26290205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 26303290 - 26303462
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  26303290 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 26303389  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  26303390 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 26303462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 26315284 - 26315456
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  26315284 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 26315383  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  26315384 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 26315456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 16633891 - 16633971
Alignment:
Q  138 tttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  16633891 tttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 16633971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 5599240 - 5599319
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5599240 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 5599319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 5636035 - 5635956
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5636035 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 5635956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 26121958 - 26122037
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  26121958 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 26122037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 3032198 - 3032370
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||| ||||||||||||||||         ||||| |||||| |||||||||||||        |||||||    
T  3032198 tttttctatttacaccccatgtttttctggttatacccaaattttcttaatttttttttataataccaaaactgcccttttatataaattttcttaaaac 3032297  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
     |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  3032298 tctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 3032370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 8376973 - 8376867
Alignment:
Q  112 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 211  Q
    |||||||||||||||||||        |||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||||    
T  8376973 caaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagcgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 8376874  T
Q  212 ttgatgt 218  Q
    |||||||    
T  8376873 ttgatgt 8376867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 34564383 - 34564488
Alignment:
Q  111 ccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaa 210  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||    
T  34564383 ccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcaatgagtttcaccctctttcaccccataaagggatcgatcaaacaa 34564482  T
Q  211 tttgat 216  Q
    ||||||    
T  34564483 tttgat 34564488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 35606100 - 35605987
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| |||||||| |||||||||||        |||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  35606100 ataataccaaaattccccttttatataaattttcttaaaaccttaattttattcattgtcagtgaatttcaccctctttcaccccataaagcgatcgatc 35606001  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  35606000 aaacaatttgatgt 35605987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 42512910 - 42512831
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||| |||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  42512910 ttaaaactctaattttattcattgtcagtgagtttcaccctatttcaccccacaaagcgatcgatcaaacaatttgatgt 42512831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 23356615 - 23356714
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  23356615 ataataccaaaattgcccttttatataaattttcttaaaaccttaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 23356714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 3136525 - 3136670
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||||||||||||||||||||||||  |||||||    
T  3136525 ggttacacccaaattttcttaaaagttttttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcactgagttt 3136624  T
Q  174 caccctcttttaccccataaagcgatc--gatcaaacaatttgatgt 218  Q
    |||||||||| ||||||  ||||||||  || |||||||||||||||    
T  3136625 caccctctttcacccca-caagcgatcatgagcaaacaatttgatgt 3136670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 26294413 - 26294550
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  26294413 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 26294512  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttt 183  Q
    |||||||||||||||||||  ||||||||||| |||||    
T  26294513 cctaattttattcattgtcactgagtttcaccatcttt 26294550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 26307670 - 26307807
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  26307670 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 26307769  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttt 183  Q
    |||||||||||||||||||  ||||||||||| |||||    
T  26307770 cctaattttattcattgtcactgagtttcaccatcttt 26307807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 189
Target Start/End: Original strand, 12713392 - 12713535
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||| ||||||||||        |||||||    
T  12713392 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataatatcaaaattgtccttttatataaattttcttaaaac 12713491  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttacccc 189  Q
    |||||||||||||||||||  ||||||||||||||||| |||||    
T  12713492 cctaattttattcattgtcactgagtttcaccctctttcacccc 12713535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 5988877 - 5988797
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  5988877 ttaaaaccctaattttattcattgtcattgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 5988797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 6468969 - 6469141
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  6468969 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 6469068  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  6469069 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 6469141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 25085792 - 25085649
Alignment:
Q  75 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 174  Q
    |||||||||||||||| |||||        ||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||    
T  25085792 gttacacccaaatttttttaaaagttttttataattccaaaattgcccttttatataattttttttaaaaccctaattttattcattgtcagtgagtttc 25085693  T
Q  175 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||    
T  25085692 accctctttcaccccacaaagcgatcgattaaacaatttgatgt 25085649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 25143734 - 25143621
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||     
T  25143734 ataattccaaaattgcccttttatataattttttttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatt 25143635  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  25143634 aaacaatttgatgt 25143621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 33281643 - 33281499
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  33281643 ggttacacccaaattttcttaaaaaaaaattataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 33281544  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||    
T  33281543 caccctctttcatcccataaagcgatagatcaaacaatttgatgt 33281499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 31510738 - 31510881
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||||| |||||||||||||||||| ||||||||    
T  31510738 ggttacacccaaattttcttaaattttttt-ataatatcaaaattgcccttttatataaattttcttaaaactctaattttattcattgtcagtgagttt 31510836  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  31510837 caccctctttcaccccataaagcgatcgatcaaacaatttgatgt 31510881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 37866694 - 37866522
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||| ||||||||||||||         |||||  |||||||||||||||||||       ||||||||    
T  37866694 tttttctatttacaccccatgtttttctggttacatccaaattttcttaatttttttttataatatcaaaattgcccttttatataattttttttaaaac 37866595  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  37866594 cctaattttattcattgtcagtgagtttcactctctttcaccccacaaagcgatcgatcaaacaatttgatgt 37866522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 38759660 - 38759832
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       | ||||||| |||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  38759660 tttttctatttacaccccatgtttttctgattacacctaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 38759759  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38759760 cctaattttattcattgtcaatgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38759832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 43292978 - 43293121
Alignment:
Q  75 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 174  Q
    ||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| |||||||||    
T  43292978 gttacacccaaattttcttaaaaaaaatttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttc 43293077  T
Q  175 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||| |||||  |||||||||||||||||||||||||||||||||    
T  43293078 accttctttccccccataaagcgatcgatcaaacaatttgatgt 43293121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 4155469 - 4155582
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  4155469 ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 4155568  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  4155569 aaacaatttgatgt 4155582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 9066500 - 9066330
Alignment:
Q  47 ttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaacc 146  Q
    ||||||||||||||| ||||       |||||||||||||||||||||||        ||||| | ||||||||||||||||||        ||| ||||    
T  9066500 ttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataatacaaaaattgcccttttatataaattttcttagaacc 9066402  T
Q  147 ctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  9066401 ctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgatcgatcaaataatttgatgt 9066330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 29921202 - 29921089
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||| ||||||||||        |||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||    
T  29921202 ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgccagtgagtttcaccctctttcaccccacaaagcgatcgatc 29921103  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  29921102 aaacaatttgatgt 29921089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 13145250 - 13145328
Alignment:
Q  140 taaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  13145250 taaagccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 13145328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 19034040 - 19034159
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcg------gtgagtttcaccctcttttaccccataaagcga 198  Q
    ||||| |||||||||| |||||||||       |||||||||||||||||||||||||||       |||||||||||||||||| |||||| |||||||    
T  19034040 ataataccaaaattgctcttttatataaatttttttaaaaccctaattttattcattgtcattgttagtgagtttcaccctctttcaccccacaaagcga 19034139  T
Q  199 tcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||||    
T  19034140 tcgatcaaacaatttgatgt 19034159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 19616878 - 19617041
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  19616878 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 19616977  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||    |||||||||||||||||| ||||||     | |||||||||||||||||||||    
T  19616978 cctaattttattcatt----gtgagtttcaccctctttcacccca-----caatcgatcaaacaatttgatgt 19617041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 43517586 - 43517702
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        ||||||||||||||||||||||||||  |||||||    
T  43517586 ggttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcactgagttt 43517685  T
Q  174 caccctcttttacccca 190  Q
    |||||||||| ||||||    
T  43517686 caccctctttcacccca 43517702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 24559874 - 24559771
Alignment:
Q  75 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 174  Q
    ||||||||||||||||||||||        ||||| ||||||||| ||| ||||||        |||||||||||||||||||||||||  |||||||||    
T  24559874 gttacacccaaattttcttaaattttttttataataccaaaattgtcctattatataaattttcttaaaaccctaattttattcattgtaagtgagtttc 24559775  T
Q  175 accc 178  Q
    ||||    
T  24559774 accc 24559771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 24600843 - 24600804
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccc 178  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  24600843 ttaaaaccctaattttattcattgtaagtgagtttcaccc 24600804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 35896574 - 35896402
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  35896574 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 35896475  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  35896474 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 35896402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 37094854 - 37094710
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||    
T  37094854 ggttacacccaaattttcttaaatttgttttataataccaaaattgcccttttatataaattttcttaaaaccttaattttattcattgtcagtgagttt 37094755  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  37094754 caccctcttttaccccacaaagcgatcgatcaaacaatttgatgt 37094710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 25852653 - 25852825
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  25852653 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 25852752  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  25852753 cctaattttattcattgtcagtgagtttcactctctttcaccccacaaagcgatcgatcaaacaatttgatgt 25852825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 32550906 - 32551050
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||||| ||||||||        |||||||||||||||||||||||||| ||||||||    
T  32550906 ggttacacccaaattttcttaaaagttttttataataccaaaattgcctttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 32551005  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  32551006 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 32551050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 42343778 - 42343608
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    ||||||||||||||||| |||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  42343778 tttttctatttacaccttatgtttttctggttacacccaaattttcttaa--tttttttataataccaaaattgcccttttatatcatttttcttaaaac 42343681  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42343680 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 42343608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 2389935 - 2390106
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  2389935 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataatttttcttaaaac 2390033  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  2390034 cctaattttattcattgtcagtgagtttcaccctctttcaccacacaaagcgatcgatcaaacaatttgatgt 2390106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 21658738 - 21658567
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  21658738 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataatttttcttaaaac 21658640  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  21658639 cctaattttattcattgtcagtgagtttcaccctctttcaccacacaaagcgatcgatcaaacaatttgatgt 21658567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 43577692 - 43577579
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  43577692 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 43577593  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  43577592 aaacaatttgatgt 43577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 927816 - 927645
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  927816 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgcccttttatataaattttcttaaaac 927718  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  927717 cctaattttattcattgtcaatgagtttcaccctcttttaccccacaaagcgatctatcaaacaatttgatgt 927645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 3179000 - 3178887
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||    
T  3179000 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatc 3178901  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  3178900 aaacaatttgatgt 3178887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 13195513 - 13195626
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| |||||||| |||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  13195513 ataataccaaaatttcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 13195612  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  13195613 aaacaatttgatgt 13195626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 1521009 - 1520865
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||  ||||||||    
T  1521009 ggttacacccaaattttcttaaattttttttataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgttagtgagttt 1520910  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||    
T  1520909 caccctctttcaccccacaaagcgatcgatcatacaatttgatgt 1520865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 39697079 - 39697251
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    ||||||||||||||||||||        ||||||| |||||||||||||||        ||||| ||||||||| | ||||||||        |||||||    
T  39697079 tttttctatttacacctcatatttttctggttacatccaaattttcttaaattttttttataataccaaaattgtcattttatataaattttcttaaaac 39697178  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||||    
T  39697179 cctaattttattcattgtcggtgagttttaccctctttcaccccacaaagcgatcaatcaaacaatttgatgt 39697251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 40811048 - 40811161
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||| |||||||||| |||||| |||||||||||||||||| |||||| |||||||||||||    
T  40811048 ataataccaaaattgcccttttatataaattttcttaaaaccataattttatttattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 40811147  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  40811148 aaacaatttgatgt 40811161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 44144169 - 44144056
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        ||||||||||||||||||||||||||  ||||||||||||||||| |||||| || ||||||||||    
T  44144169 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcaatgagtttcaccctctttcaccccacaaggcgatcgatc 44144070  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  44144069 aaacaatttgatgt 44144056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 1482592 - 1482513
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  1482592 ttaaaaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 1482513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 34203030 - 34202951
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||    
T  34203030 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcatcccacaaagcgatcgatcaaacaatttgatgt 34202951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 27980312 - 27980377
Alignment:
Q  153 ttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||| || |||||||||||||||||| | |||| |||||||| ||||||||||||||||||    
T  27980312 ttattcattctcagtgagtttcaccctctttcatcccacaaagcgatggatcaaacaatttgatgt 27980377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 28066842 - 28066907
Alignment:
Q  153 ttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||| || |||||||||||||||||| | |||| |||||||| ||||||||||||||||||    
T  28066842 ttattcattctcagtgagtttcaccctctttcatcccacaaagcgatggatcaaacaatttgatgt 28066907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 10639496 - 10639383
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cga 202  Q
    ||||| ||||||||| ||||||||||        ||||||||||||||||||||||||||  |||||||||||||| || ||||||  |||||||  |||    
T  10639496 ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcactgagtttcaccctc-ttcacccca-caagcgatcacga 10639399  T
Q  203 tcaaacaatttgatgt 218  Q
    ||||||||||||||||    
T  10639398 tcaaacaatttgatgt 10639383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 2481926 - 2482098
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  2481926 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 2482025  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  2482026 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 2482098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 44722696 - 44722552
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||    
T  44722696 ggttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaatttttttaaaaccctaattttattcattgtcagtgagttt 44722597  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  44722596 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 44722552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 34270037 - 34270209
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  34270037 tttttctatttacaccccatgtttttctggttacatccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 34270136  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  34270137 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34270209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 34276272 - 34276444
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  34276272 tttttctatttacaccccatgtttttctggttacatccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 34276371  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  34276372 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34276444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 40535923 - 40536094
Alignment:
Q  47 ttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaacc 146  Q
    ||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||||||    
T  40535923 ttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 40536022  T
Q  147 ctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  40536023 ctaattttattcattgtcaatgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 40536094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 2137663 - 2137807
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| ||||||||    
T  2137663 ggttacacccaaattttcttaaaaaaaaattataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 2137762  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  2137763 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 2137807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 11172647 - 11172791
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  11172647 ggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 11172746  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||  |||||||||||||||||||||||||||    
T  11172747 caccctctttcacccctcaaagcgatcgatcaaacaatttgatgt 11172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 211
Target Start/End: Complemental strand, 15941662 - 15941497
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  15941662 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataataccaaaattgcccttttatataaattttcttaaaac 15941563  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 211  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  15941562 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 15941497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 24317997 - 24317826
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  24317997 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgcccttttatataaattttcttaaaac 24317899  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  24317898 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 24317826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 39568652 - 39568823
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||| ||||||||        |||||||    
T  39568652 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatt-ataataccaaaattgcctttttatataaattttcttaaaac 39568750  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  39568751 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 39568823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 39983130 - 39983017
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  39983130 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 39983031  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  39983030 aaacaatttgatgt 39983017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 28852103 - 28852275
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||| ||        |||||||    
T  28852103 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttacataaattttcttaaaac 28852202  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||| |||||||| ||||||||||||||||||    
T  28852203 cctaattttattcattgtcagtgagtttcaacctctttcaccccacaaagcgattgatcaaacaatttgatgt 28852275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 52043698 - 52043841
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||| |||||||||||||||||||||| ||||||||    
T  52043698 ggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaattttcttagaaccctaattttattcattgtcagtgagttt 52043796  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  52043797 caccctcttttaccccacaaagcgatcgatcaaataatttgatgt 52043841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 221
Target Start/End: Complemental strand, 20582414 - 20582240
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||       || |||||    
T  20582414 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaatttctt-aaaac 20582316  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgtcca 221  Q
    ||||||||||| | ||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  20582315 cctaattttatacgttgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgtcca 20582240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 50728582 - 50728502
Alignment:
Q  138 tttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  50728582 tttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 50728502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 26163888 - 26163967
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  26163888 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 26163967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 33010010 - 33010150
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||| ||        |||||||||||||||||||||||||| |||| |||    
T  33010010 ggttacacccaaattttcttaaattttttttataataccaaaattgcccttttacataaattttcttaaaaccctaattttattcattgtcagtgaattt 33010109  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttg 214  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  33010110 caccctctttcaccccacaaagcgatcgatcaaacaatttg 33010150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 49823990 - 49823846
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    ||||| |||||||||||||||||        ||||| ||||||||||| ||||||||        |||||||||||||||||||| ||||| ||||||||    
T  49823990 ggttatacccaaattttcttaaattttttttataataccaaaattgcctttttatataaattttcttaaaaccctaattttattcgttgtcagtgagttt 49823891  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  49823890 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 49823846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 6653927 - 6653756
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| | ||||||||||||||||||        |||||||    
T  6653927 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataatactaaaattgcccttttatataaattttcttaaaac 6653829  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  6653828 cctaattttattcattgtcagtgagtttcaccctctgtcaccccacaaagcgatcgatcaaacaatttgatgt 6653756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 42949009 - 42948837
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        || |||     
T  42949009 tttttctatttacaccccatgtttttttggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctttaaat 42948910  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  42948909 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 42948837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 51676555 - 51676660
Alignment:
Q  112 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 211  Q
    |||||||||||||||||||        |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  51676555 caaaattgcccttttatataaattttcttaaaacc-taattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaat 51676653  T
Q  212 ttgatgt 218  Q
    |||||||    
T  51676654 ttgatgt 51676660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 14246574 - 14246687
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||| | |||||||||| ||||||| |||||| |||||||||||||    
T  14246574 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgccagtgagtttcatcctctttcaccccacaaagcgatcgatc 14246673  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  14246674 aaacaatttgatgt 14246687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 52025410 - 52025297
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        ||||||||||||||||||| |||||| |||||||||||||||||| || ||| |||||||| ||||    
T  52025410 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttatttattgtcagtgagtttcaccctctttcactccacaaagcgattgatc 52025311  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  52025310 aaacaatttgatgt 52025297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 18909900 - 18909821
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||| | ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  18909900 ttaaaatcttaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 18909821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 40400844 - 40400671
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  40400844 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 40400745  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  40400744 cctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 40400671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 13234595 - 13234730
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  13234595 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 13234694  T
Q  146 cctaattttattcattgtcggtgagtttcaccctct 181  Q
    ||||||||||||||||||| ||||||||||||||||    
T  13234695 cctaattttattcattgtcagtgagtttcaccctct 13234730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 7142032 - 7141860
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  ||||||| |||||||||||        |||||||    
T  7142032 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatttataatatcaaaattacccttttatatatattttcttaaaac 7141933  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7141932 cctaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 7141860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 18894563 - 18894391
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||||     
T  18894563 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaattttataatatcaaaattgcccttttatataaattttcttaaaat 18894464  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18894463 cctaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 18894391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 25332153 - 25332325
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||   ||||||||||||||||||        |||||||    
T  25332153 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaatatttataataaaaaaattgcccttttatataaattttcttaaaac 25332252  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  25332253 cctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgatctatcaaacaatttgatgt 25332325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 6626124 - 6625980
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||    
T  6626124 ggttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaattttcttaaaaccttaattttattcattgtcagtgagttt 6626025  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  6626024 caccctctttcactccataaagcgatcgatcaaacaatttgatgt 6625980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 6167252 - 6167423
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| | ||||||||||||||||||        |||||||    
T  6167252 tttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataatacaaaaattgcccttttatataaattttcttaaaac 6167350  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||| |||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  6167351 cctagttttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 6167423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 218
Target Start/End: Original strand, 13889339 - 13889482
Alignment:
Q  75 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 174  Q
    ||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||| ||||||||||||||||||| |||||||||    
T  13889339 gttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaattttcttaaaatcctaattttattcattgtcagtgagtttc 13889437  T
Q  175 accctctttta-ccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||    
T  13889438 accctctttcacccccacaaagcgatcgatcaaacaatttgatgt 13889482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 29121690 - 29121796
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||| | ||||| | |||| |||||||||||||    
T  29121690 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcatcatctttcatcccacaaagcgatcgatc 29121789  T
Q  205 aaacaat 211  Q
    || ||||    
T  29121790 aatcaat 29121796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 25331743 - 25331634
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    ||||||| |||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  25331743 ggttacatccaaattttcttaaaaaaaatttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 25331644  T
Q  174 caccctcttt 183  Q
    ||||||||||    
T  25331643 caccctcttt 25331634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 3095273 - 3095193
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    |||||| |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  |||||||||||||||||||    
T  3095273 ttaaaatcctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgatcaaacaatttgatgt 3095193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 29629858 - 29629938
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  29629858 ttaaaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgaacaaacaatttgatgt 29629938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 19873356 - 19873528
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||| ||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  19873356 tttttctatttacaccccatgtttttctggttgcacccaaattttcttaaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 19873455  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  19873456 cctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 19873528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 20434931 - 20434759
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||| ||        ||||| ||||||||||||||||||||        |||||||    
T  20434931 tttttctatttacaccccatgtttttctggttacacccaaattttctttaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 20434832  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  20434831 cctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 20434759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 28405715 - 28405887
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||       ||||||||    
T  28405715 tttttctatttacaccccatgtttttctggttacatccaaattttcttaaaatttttttataataccaaaattgcccttttatatataaaaatttaaaac 28405814  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  28405815 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatggatcaaacaatttgatgt 28405887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 43829524 - 43829695
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  43829524 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaattttcttaaaac 43829622  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43829623 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 43829695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 42349491 - 42349347
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| ||||||||    
T  42349491 ggttacacccaaattttcttaaaaaaaatttataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 42349392  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  42349391 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 42349347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 42723410 - 42723582
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||| ||        |||||||    
T  42723410 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttacataaattttcttaaaac 42723509  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  42723510 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgattgatcaaacaatttgatgt 42723582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 52912429 - 52912601
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||| ||        |||||  |||||||||||||||||||        |||||||    
T  52912429 tttttctatttacaccccatgtttttctggttacacccaaattttctttaaaaaaatttataatatcaaaattgcccttttatataaattttcttaaaac 52912528  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  52912529 cctaattttattcattgtcagtgagtttcgccctctttcaccccataaagcgatcgatcaaacaatttgatgt 52912601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 55214872 - 55215044
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  55214872 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 55214971  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  55214972 cctaattttattcattgtgagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 55215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 55220686 - 55220514
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  55220686 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 55220587  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  55220586 cctaattttattcattgtgagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 55220514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 56363522 - 56363350
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       | |||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  56363522 tttttctatttacaccccatgtttttctgattacacccaaattttcttaaaaactttttataataccaaaattgcccttttatataaattttcttaaaac 56363423  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  56363422 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcaatcgatcaaacaatttgatgt 56363350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 20738565 - 20738394
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||| |||||        ||||| ||||||||||||||||||||        |||||||    
T  20738565 tttttctatttacaccccatgtttttctggttacacccaaatttttttaaaagttttt-ataataccaaaattgcccttttatataaattttcttaaaac 20738467  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  20738466 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 20738394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 56017717 - 56017889
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  56017717 tttttctatttacaccccatgtttttctggttacatccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 56017816  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    | ||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  56017817 cttaattttattcattgccagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 56017889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 38291228 - 38291333
Alignment:
Q  113 aaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatt 212  Q
    ||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  38291228 aaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatt 38291327  T
Q  213 tgatgt 218  Q
    ||||||    
T  38291328 tgatgt 38291333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 23894557 - 23894636
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23894557 ttaaaaccttaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 23894636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 46563781 - 46563924
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  46563781 ggttacacccaaattttcttaaattttttt-ataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 46563879  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| ||| || |||||||||||||||||||||||||||    
T  46563880 caccctctttcacctcacaaagcgatcgatcaaacaatttgatgt 46563924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 37233441 - 37233614
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||| |||||||||||||        ||||| ||||||||| ||||||||||        |||||||    
T  37233441 tttttctatttacaccccatgtttttctggttacacctaaattttcttaaaatttttttataataccaaaattgtccttttatataaattttcttaaaac 37233540  T
Q  146 cctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||||||||||||||||    
T  37233541 cctaattttattcattgtcagtgagttttaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 37233614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 39539829 - 39539908
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  39539829 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcactccacaaagcgatcgatcaaacaatttgatgt 39539908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 55182796 - 55182968
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||| |||||||||||||||        |||||   ||||||||||||||||||        ||||||     
T  55182796 tttttctatttacaccccatgtttttttggttacatccaaattttcttaaattttttttataatattaaaattgcccttttatataaattttcttaaaat 55182895  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  55182896 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 55182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 614590 - 614474
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgat- 203  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||     
T  614590 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 614491  T
Q  204 --caaacaatttgatgt 218  Q
      |||||||||||||||    
T  614490 aacaaacaatttgatgt 614474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 53874379 - 53874485
Alignment:
Q  112 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 211  Q
    |||||||||||||||||||        |||||||  ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||    
T  53874379 caaaattgcccttttatataaattttcttaaaactttaattttattcattgtcagtgagttttaccctctttcaccccataaagcgatcgatcaaacaat 53874478  T
Q  212 ttgatgt 218  Q
    |||||||    
T  53874479 ttgatgt 53874485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 52839050 - 52839163
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| | |||| ||| |||| ||||    
T  52839050 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcatcccacaaaccgattgatc 52839149  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  52839150 aaacaatttgatgt 52839163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 1356321 - 1356494
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  1356321 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 1356420  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  1356421 cctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 1356494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 10541383 - 10541557
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgccctttt-atatnnnnnnntttaaaa 144  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| |||||||||||||||| ||||        ||||||    
T  10541383 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgccctttttatataaattttcttaaaa 10541482  T
Q  145 ccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  10541483 ccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 10541557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 5098848 - 5098717
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        | ||| |||||||||| |||||||||        |||||||    
T  5098848 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaattttaaaataccaaaattgcacttttatataaattttcttaaaac 5098749  T
Q  146 cctaattttattcattgtcggtgagtttcacc 177  Q
    ||||||||||||||||||| ||||||||||||    
T  5098748 cctaattttattcattgtcagtgagtttcacc 5098717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 25858352 - 25858309
Alignment:
Q  175 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||| |||||| |||||||||||||||||||||||||||    
T  25858352 accctctttcaccccacaaagcgatcgatcaaacaatttgatgt 25858309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 22781077 - 22781249
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| |||||||||| |||||||||        |||||||    
T  22781077 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgctcttttatataaattttcttaaaac 22781176  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  22781177 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 22781249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 33967738 - 33967566
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  33967738 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttatataaattttcttaaaac 33967639  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  33967638 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgattgatcaaacaatttgatgt 33967566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 37970941 - 37971113
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  37970941 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 37971040  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37971041 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 37971113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 10840662 - 10840830
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  10840662 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 10840761  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 214  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  10840762 cctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 10840830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 41070703 - 41070535
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  41070703 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaaaac 41070604  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 214  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  41070603 cctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 41070535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 25711719 - 25711575
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| |||||||| || ||||||||        |||||||||||||||||||||||||| ||||||||    
T  25711719 ggttacacccaaattttcttaaaatttttttataataccaaaattacctttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 25711620  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  25711619 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 25711575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 38871916 - 38871772
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    ||||||| |||||||||||||||        |||||  |||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  38871916 ggttacatccaaattttcttaaaaaatttttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 38871817  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  38871816 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38871772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 32237119 - 32236947
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  32237119 tttttctatttacaccccatgtttgtctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 32237020  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||| |||||||||||||| |||||||||||||||||| |||||  ||| |||||||||||||||||||||||    
T  32237019 cctacttttattcattgtcagtgagtttcaccctctttcacccctcaaaacgatcgatcaaacaatttgatgt 32236947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 33711980 - 33712123
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  33711980 ggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaatattcttaaaaccctaattttattcattgtcagtgagttt 33712078  T
Q  174 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||    
T  33712079 caccctctttcaccccacaaagtgatcgatcaaacaatttgatgt 33712123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 36431135 - 36430967
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||    
T  36431135 tttttctatttacaccccatgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgtccttttatataaattttcttaaaac 36431036  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 214  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  36431035 cctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 36430967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 20834845 - 20834951
Alignment:
Q  112 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 211  Q
    |||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  20834845 caaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 20834944  T
Q  212 ttgatgt 218  Q
    |||||||    
T  20834945 ttgatgt 20834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 4515366 - 4515445
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  4515366 ttaaaaccctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 4515445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 4044045 - 4044217
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||       ||||||||    
T  4044045 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataattttttttaaaac 4044144  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||| |||||   |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  4044145 cctaattttatccattggtagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 4044217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 24395989 - 24395846
Alignment:
Q  75 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 174  Q
    ||||||||||||||||||||||        ||||| |||||||||||||| |||||        |||||||||||||||||||||||| | |||||||||    
T  24395989 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttatatataaattttcttaaaaccctaattttattcattgacagtgagtttc 24395890  T
Q  175 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||    
T  24395889 accctctttcaccccacaaagtgatcgatcaaacaatttgatgt 24395846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 20656522 - 20656694
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||| ||||||||||        |||||||    
T  20656522 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataatatcaaaattgtccttttatataaattttcttaaaac 20656621  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||| |||||||||||||| |||||||||||||||||| |||||  ||||  |||||||||||||||||||||    
T  20656622 cctacttttattcattgtcagtgagtttcaccctctttcacccctcaaagaaatcgatcaaacaatttgatgt 20656694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 7149235 - 7149370
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  7149235 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 7149334  T
Q  146 cctaattttattcattgtcggtgagtttcaccctct 181  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7149335 cctaattttattcattgtcagtgagtttcaccctct 7149370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 20049100 - 20048955
Alignment:
Q  74 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 173  Q
    |||||||||||||||||||||||        ||||| |||||||||  |||||||||        ||||||||||||||||||||||||||  |||||||    
T  20049100 ggttacacccaaattttcttaaaagttttttataataccaaaattgttcttttatataaattttcttaaaaccctaattttattcattgtcactgagttt 20049001  T
Q  174 caccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    |||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  20049000 caccctctttcacccca-caagcgatcacgaacaaacaatttgatgt 20048955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 40585484 - 40585564
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  |||||||||||||||||||    
T  40585484 ttaaaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgatcaaacaatttgatgt 40585564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 672883 - 672720
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||| |||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  672883 tttttctatttacaccccatgtttttctggttacacctaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 672784  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||    |||||||||||||||||| ||||||     | |||||||||||||||||||||    
T  672783 cctaattttattcatt----gtgagtttcaccctctttcacccca-----caatcgatcaaacaatttgatgt 672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 10999078 - 10999192
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cga 202  Q
    ||||| |||||||||||||||||| |        ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  |||    
T  10999078 ataataccaaaattgcccttttatgtaaattttcttaaaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacga 10999176  T
Q  203 tcaaacaatttgatgt 218  Q
    ||||||||||| ||||    
T  10999177 tcaaacaatttaatgt 10999192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 53975032 - 53974929
Alignment:
Q  105 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 204  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||          |||||| |||||||||||||    
T  53975032 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttc----------accccacaaagcgatcgatc 53974943  T
Q  205 aaacaatttgatgt 218  Q
    ||||||||||||||    
T  53974942 aaacaatttgatgt 53974929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 6267664 - 6267703
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccc 178  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  6267664 ttaaaaccctaattttattcattgtcagtgagtttcaccc 6267703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 41346 - 41174
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         |||||  |||||||||||||||||||        |||||||    
T  41346 tttttctatttacaccccatgtttttttggttacacccaaattttcttaatttttttttataatatcaaaattgcccttttatataaattttcttaaaac 41247  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  41246 cctaattttattcattgtcagtgagtttcaccctctttcatcccataaagcgatcgatcaaacaatttgatgt 41174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 1370 - 1542
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||||||    
T  1370 tttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaaaac 1469  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  1470 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 1542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 4738 - 4659
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  4738 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 4659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 14682 - 14510
Alignment:
Q  46 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 145  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        || |||     
T  14682 tttttctatttacaccccatgtttttttggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctttaaat 14583  T
Q  146 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  14582 cctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 14510  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 156453 - 156522
Alignment:
Q  139 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 218  Q
    |||||||||||||||||||||||||| |||||||||          |||||| |||||||||||||||||||||||||||    
T  156453 ttaaaaccctaattttattcattgtcagtgagtttc----------accccacaaagcgatcgatcaaacaatttgatgt 156522  T

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