View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_18 (Length: 716)

Name: NF8901_low_18
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_18
NF8901_low_18
[»] chr1 (6 HSPs)
chr1 (13-680)||(9804675-9805341)
chr1 (72-504)||(9817777-9818211)
chr1 (13-353)||(9806455-9806792)
chr1 (565-708)||(9817550-9817693)
chr1 (562-701)||(9817438-9817577)
chr1 (572-680)||(9817341-9817448)
[»] scaffold0432 (3 HSPs)
scaffold0432 (10-501)||(11788-12285)
scaffold0432 (558-708)||(11558-11708)
scaffold0432 (562-680)||(11467-11585)
[»] chr7 (1 HSPs)
chr7 (350-504)||(42778749-42778900)
[»] chr8 (1 HSPs)
chr8 (38-129)||(2371052-2371144)


Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 13 - 680
Target Start/End: Complemental strand, 9805341 - 9804675
Alignment:
Q  13 gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaata 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9805341 gacatcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaata 9805242  T
Q  113 tgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaa 212  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  9805241 tgtacttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaa 9805142  T
Q  213 caaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagtataagaaatccatctgtggataataaattaa 312  Q
    |||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9805141 caaaatgaaaagcactggtgatgaggaggaagactcttccccaaaggtaagatggggaatttgaagagtataagaaatccatgtgtggataataaattaa 9805042  T
Q  313 aataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnn 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||       
T  9805041 aataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaa 9804942  T
Q  413 nnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgag 512  Q
         |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9804941 aaaa-atatgaaaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgag 9804843  T
Q  513 aggttggcaacggcgactggtcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggtt 612  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9804842 aggttggcaacggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggtt 9804743  T
Q  613 ggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga 680  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9804742 ggcaacagcgattgagggagaaaattgtgtttagggtttcaagagaatgagaaatgaggatgggagga 9804675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 72 - 504
Target Start/End: Complemental strand, 9818211 - 9817777
Alignment:
Q  72 aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt 169  Q
    |||||||||||||||||  || |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  9818211 aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt 9818112  T
Q  170 tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatgggg 269  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  9818111 tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaagactcttccccaaaggtaagatgggg 9818012  T
Q  270 aatttgaagagt--ataagaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaa 367  Q
    ||||||||||||  | ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  9818011 aatttgaagagtagaaaagaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcacataaaa 9817912  T
Q  368 gacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggt 467  Q
    ||||||||||||| ||||||||||||||||||||||| ||||        || || ||||||||| ||||||||||||||||||||||||| ||||||||    
T  9817911 gacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaacgaggt 9817814  T
Q  468 tgaagtttcatgaaaactccatcaaaagagataacca 504  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9817813 tgaagtttcatgaaaattccatcaaaagagataacca 9817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 9806455 - 9806792
Alignment:
Q  13 gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaa 110  Q
    |||||||||||||| || |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||  ||| ||||| | ||||||| |||    
T  9806455 gacatcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaa 9806554  T
Q  111 tatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttg 210  Q
    ||||||||||| |||||||||| ||||||  ||||| |||||||||||| || |||||||||||||            ||||||||||||||| ||||||    
T  9806555 tatgtacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacac------------aagggaaaaggaattattgttg 9806642  T
Q  211 aacaaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagt---ataagaaatccatctgtggat 302  Q
    ||||||||||| ||     ||| |  || ||| ||||||||| || ||| |||||||| |||||||||||||||||   ||||||| | ||| | |        
T  9806643 aacaaaatgaagaggaggccactatagaagaggaggaagactatt-cccgaaagtaaggtggggaatttgaagagtagaataagaagttcatgtctaccc 9806741  T
Q  303 aataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaa 353  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9806742 aataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa 9806792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 565 - 708
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
Q  565 ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga 664  Q
    ||||||||||||||||||||||||||  ||| || |||||||||||||| ||||||||  |||||| ||||||| ||||||||||||||||| |||||||    
T  9817693 ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga 9817594  T
Q  665 aatgaggatgggaggattattttgtttgattgatgtccatctca 708  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  9817593 aatgaggatgggaggattcttttgtttgattgatgtcgatctca 9817550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 562 - 701
Target Start/End: Complemental strand, 9817577 - 9817438
Alignment:
Q  562 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 661  Q
    ||||||| | |||| |||||||||||||   |||||| ||||||||||||||||| | |||  |||||||||||| ||||||||||||||||| ||||||    
T  9817577 ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg 9817478  T
Q  662 agaaatgaggatgggaggattattttgtttgattgatgtc 701  Q
    |||||||||||| |||||||| ||||| ||||| ||||||    
T  9817477 agaaatgaggattggaggattcttttgattgatcgatgtc 9817438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 572 - 680
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
Q  572 tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg 671  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||||  |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  9817448 tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg 9817350  T
Q  672 atgggagga 680  Q
    |||||||||    
T  9817349 atgggagga 9817341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 215; Significance: 1e-117; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 10 - 501
Target Start/End: Complemental strand, 12285 - 11788
Alignment:
Q  10 atggacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaa 108  Q
    |||||||||||||| || || ||||||||||||||| |||||||||  |||||||| ||||||| |||| ||||||||| || ||||| | ||||||| |    
T  12285 atggacatcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattca 12186  T
Q  109 aatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgt 208  Q
    | ||||||||| | ||||||||||  |||||||||||||||| |||||||| ||||||||| ||||||   |||||| | |||||| |||||||||||||    
T  12185 attatgtacttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgt 12087  T
Q  209 tgaacaaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagta---taagaaatccatctgtgg 300  Q
    ||||||||||||||||     ||| |||||| |  ||||||||||||||| ||| ||||||||||||||||||||||||   ||||||||| || |||      
T  12086 tgaacaaaatgaaaaggatgccactagtgataacgaggaagactcttccctaaa-gtaagatggggaatttgaagagtagaataagaaatctatgtgtac 11988  T
Q  301 ataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaat 400  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  11987 ataataaaataaaataaaattcatgtatttattacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaat 11888  T
Q  401 gatcaagatnnnnnnntatatg-aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat 499  Q
     ||  ||||        || || |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11887 tatatagataaaaca--atgtgaaaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagat 11790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 558 - 708
Target Start/End: Complemental strand, 11708 - 11558
Alignment:
Q  558 atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag 657  Q
    ||||||||||||||  |||||||| |||||||| ||||||| || |||||||||||| | |||   ||||| || |||| ||||||| | | ||||||||    
T  11708 atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag 11609  T
Q  658 aatgagaaatgaggatgggaggattattttgtttgattgatgtccatctca 708  Q
    |||| ||| |||||||||||||||| |||||||||||  ||||| ||||||    
T  11608 aatgggaagtgaggatgggaggattcttttgtttgatcaatgtcgatctca 11558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 562 - 680
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
Q  562 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 661  Q
    ||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || ||   ||||||||||| | ||| | || ||||| ||||||     
T  11585 ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata 11486  T
Q  662 agaaatgaggatgggagga 680  Q
    |||||||||||||||||||    
T  11485 agaaatgaggatgggagga 11467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 350 - 504
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
Q  350 gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc 449  Q
    ||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| ||||        || ||||||||||||||||||||||||||||     
T  42778749 gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct 42778846  T
Q  450 caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca 504  Q
    ||| | |||||||||||||||| || |||||||||||| ||||||||||||||||    
T  42778847 caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca 42778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
Q  38 aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta 129  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||| || ||||| ||| ||||| |||||| ||||| | |||||||    
T  2371144 aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta 2371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University