View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_24 (Length: 664)

Name: NF8901_low_24
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_24
NF8901_low_24
[»] chr4 (17 HSPs)
chr4 (19-602)||(43931832-43932416)
chr4 (600-645)||(43932447-43932492)
chr4 (502-583)||(24193468-24193549)
chr4 (500-549)||(41162193-41162242)
chr4 (516-583)||(51555973-51556040)
chr4 (531-583)||(2980577-2980629)
chr4 (516-583)||(485978-486045)
chr4 (516-567)||(39929883-39929934)
chr4 (506-567)||(2726385-2726444)
chr4 (537-583)||(4191657-4191703)
chr4 (502-567)||(4243223-4243289)
chr4 (517-566)||(5219623-5219672)
chr4 (493-550)||(25497448-25497505)
chr4 (546-583)||(41088311-41088348)
chr4 (499-572)||(46053580-46053653)
chr4 (534-575)||(52504468-52504509)
chr4 (527-583)||(4471079-4471135)
[»] chr3 (13 HSPs)
chr3 (19-332)||(35131751-35132064)
chr3 (534-574)||(24268270-24268310)
chr3 (518-575)||(28842971-28843028)
chr3 (516-574)||(31010318-31010376)
chr3 (505-555)||(48933718-48933768)
chr3 (527-581)||(1288905-1288959)
chr3 (496-574)||(36199995-36200073)
chr3 (516-574)||(52323992-52324050)
chr3 (542-583)||(16790462-16790503)
chr3 (552-585)||(44747272-44747305)
chr3 (506-567)||(48271968-48272029)
chr3 (523-567)||(16790210-16790254)
chr3 (502-538)||(49845671-49845707)
[»] chr5 (12 HSPs)
chr5 (502-583)||(26516181-26516262)
chr5 (502-583)||(32172536-32172617)
chr5 (502-583)||(29115319-29115400)
chr5 (502-583)||(20982241-20982322)
chr5 (535-583)||(19113223-19113271)
chr5 (543-582)||(19177403-19177442)
chr5 (502-572)||(11790866-11790936)
chr5 (544-574)||(38813208-38813238)
chr5 (502-567)||(14716592-14716657)
chr5 (601-642)||(32197733-32197774)
chr5 (543-583)||(3951541-3951581)
chr5 (503-583)||(37063180-37063260)
[»] chr2 (15 HSPs)
chr2 (502-574)||(11393481-11393553)
chr2 (502-574)||(11410142-11410214)
chr2 (600-645)||(42621388-42621433)
chr2 (502-577)||(3102576-3102651)
chr2 (492-583)||(29430629-29430720)
chr2 (502-583)||(33197345-33197426)
chr2 (543-583)||(10190203-10190243)
chr2 (516-571)||(17221658-17221713)
chr2 (502-567)||(4550660-4550725)
chr2 (534-583)||(9878045-9878094)
chr2 (517-574)||(11393770-11393827)
chr2 (517-574)||(11410431-11410488)
chr2 (502-567)||(18884764-18884829)
chr2 (502-583)||(42974235-42974316)
chr2 (535-583)||(17380483-17380531)
[»] scaffold0590 (1 HSPs)
scaffold0590 (504-583)||(1180-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (504-583)||(2716-2795)
[»] chr8 (11 HSPs)
chr8 (499-574)||(12972736-12972811)
chr8 (502-567)||(31884477-31884542)
chr8 (503-577)||(6918915-6918989)
chr8 (502-583)||(14482085-14482166)
chr8 (502-566)||(8062123-8062187)
chr8 (500-567)||(35220823-35220890)
chr8 (502-577)||(41336757-41336832)
chr8 (500-550)||(7008510-7008560)
chr8 (534-571)||(10488407-10488444)
chr8 (502-567)||(30043839-30043904)
chr8 (543-575)||(30172753-30172785)
[»] chr1 (11 HSPs)
chr1 (536-583)||(870962-871009)
chr1 (502-572)||(24263256-24263326)
chr1 (502-567)||(44375459-44375524)
chr1 (500-576)||(29794035-29794111)
chr1 (502-577)||(17420086-17420161)
chr1 (508-574)||(6659592-6659658)
chr1 (516-566)||(44940240-44940290)
chr1 (502-567)||(3223572-3223637)
chr1 (527-572)||(9506921-9506966)
chr1 (600-649)||(38867840-38867889)
chr1 (502-583)||(43029507-43029587)
[»] chr7 (9 HSPs)
chr7 (502-583)||(5628672-5628753)
chr7 (534-583)||(45078208-45078257)
chr7 (502-574)||(36598436-36598508)
chr7 (502-574)||(39566303-39566375)
chr7 (502-583)||(30133934-30134013)
chr7 (502-583)||(22388010-22388091)
chr7 (536-577)||(29574713-29574754)
chr7 (600-645)||(44821971-44822016)
chr7 (543-583)||(7274385-7274425)
[»] chr6 (12 HSPs)
chr6 (503-576)||(3217303-3217376)
chr6 (530-574)||(5637342-5637386)
chr6 (504-559)||(9833227-9833282)
chr6 (527-574)||(31672583-31672630)
chr6 (502-572)||(3155059-3155129)
chr6 (509-567)||(5623060-5623118)
chr6 (503-574)||(7351723-7351792)
chr6 (535-583)||(18264247-18264295)
chr6 (527-583)||(31668791-31668847)
chr6 (518-574)||(32386214-32386270)
chr6 (600-640)||(32387073-32387113)
chr6 (502-574)||(32578065-32578137)
[»] scaffold0654 (1 HSPs)
scaffold0654 (543-583)||(6743-6783)
[»] scaffold0014 (1 HSPs)
scaffold0014 (543-583)||(116662-116702)


Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 19 - 602
Target Start/End: Original strand, 43931832 - 43932416
Alignment:
Q  19 atttcgggcgccatccaacggtaagttccagtgaatcctttcgcactgccgcattgagattctaagcatgagatcccaaaatctgccacttttacacaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43931832 atttcgggcgccatccaacggtaagttccagtgaatcctttcgcgctgccgcattgagattctaagcatgagatcccaaaatctgccacttttacacaca 43931931  T
Q  119 tttcttcatccaatagcagattttctgatttgagatccctatgaagtattccttgagaatgaagatactgcattcctcttgcaatgtcaagggctaattc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43931932 tttcttcatccaatagcagattttctgatttgagatccctatgaagtattccttgagaatgaagatactgcattcctcttgcaatgtcaagggctaattc 43932031  T
Q  219 aagaaccagtttgagaggaactgaatgtggtccttgctgtagaaggtattttctcaatgagcctccagccatgtattcagtgattatacagaacactgga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43932032 aagaaccagtttgagaggaactgaatgtggtccttgctgtagaaggtattttctcaatgagcctccagccatgtattcagtgattatacagaacactgga 43932131  T
Q  319 ggtttcttacaagctccaacaaactacaatgatcaatcaaagattcaaaatgtgttaataaatgtggaaacatactcaacattaactgcatagtacttca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43932132 ggtttcttacaagctccaacaaactacaatgatcaatcaaagattcaaaatgtgttaataaatgtggaaacatactcaacattaactgcatagtacttca 43932231  T
Q  419 tcagcttcggaagagaatgaattcaacaact-nnnnnnnntcacgattgtctgctatatatgagatggatagcataagggcctttttggataaacagatt 517  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43932232 tcagcttcggaagagaatgaattcaacaactaaaaaaaaatcacgattgtctgctatatatgagatggatagcataagggcctttttggataaacagatt 43932331  T
Q  518 aattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaagaaaaagaagatagtgtca 602  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43932332 aattaagcacttataacataagtgtttatcatacaagtgcttatgtataaactatttttacaacaagaaaaagaagatagtgtca 43932416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 600 - 645
Target Start/End: Original strand, 43932447 - 43932492
Alignment:
Q  600 tcataagttattctgaagaacttgtgaaaataagatgaaaacaact 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43932447 tcataagttattctgaagaacttgtgaaaataagatgaaaacaact 43932492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 583
Target Start/End: Original strand, 24193468 - 24193549
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||||  |||||| || ||||||| ||||| || |||||||| |||| |||||||||||  ||||||||||||||    
T  24193468 tttggataaacaacttaattgagcacttatagcataaacgcttatcatataagtacttatgtataagttatttttacaacaa 24193549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 549
Target Start/End: Complemental strand, 41162242 - 41162193
Alignment:
Q  500 tttttggataaacagattaattaagaacttataacataagcgtttatcat 549  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  41162242 tttttggataaacaacttaattaagcacttataacataagcgtttatcat 41162193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 516 - 583
Target Start/End: Complemental strand, 51556040 - 51555973
Alignment:
Q  516 ttaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||| ||| ||||||||||||| | ||||||||| |||||||||||||||| ||||| ||| |||||    
T  51556040 ttaataaagcacttataacataaccatttatcatataagtgcttatgtataagctattattataacaa 51555973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 583
Target Start/End: Complemental strand, 2980629 - 2980577
Alignment:
Q  531 taacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||| |||||||||| |||||||||||||||| |||||| || |||||    
T  2980629 taacataagtgtttatcatataagtgcttatgtataagctatttctataacaa 2980577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 583
Target Start/End: Original strand, 485978 - 486045
Alignment:
Q  516 ttaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||||||  |||||| |||||||| |||||||| |||||||||||||||  |||||| || |||||    
T  485978 ttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgtatatgctatttctaaaacaa 486045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 567
Target Start/End: Complemental strand, 39929934 - 39929883
Alignment:
Q  516 ttaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    |||||||| |||||||||||||| | ||||||||  ||||||||||||||||    
T  39929934 ttaattaacaacttataacataaacatttatcatttaagtgcttatgtataa 39929883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 506 - 567
Target Start/End: Complemental strand, 2726444 - 2726385
Alignment:
Q  506 gataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||||||  ||||||||||||||||| |||||||| ||||| |||  ||||||||||||||    
T  2726444 gataaacaacttaattaagaacttatagcataagcgcttatcgtac--gtgcttatgtataa 2726385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 583
Target Start/End: Original strand, 4191657 - 4191703
Alignment:
Q  537 aagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||||||||||| |||||||||||||||| |||||| || |||||    
T  4191657 aagcgtttatcatataagtgcttatgtataagctatttctataacaa 4191703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 4243223 - 4243289
Alignment:
Q  502 tttggataaacagattaattaagaactta-taacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||||||||||| |||||||||  |||| || |||||||| |||||||| |||||||| |||||||    
T  4243223 tttggataaacagcttaattaagtgcttattagcataagcgcttatcatataagtgcttgtgtataa 4243289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Complemental strand, 5219672 - 5219623
Alignment:
Q  517 taattaagaacttataacataagcgtttatcatacaagtgcttatgtata 566  Q
    ||||||||||||||||||||||  | |||||||| ||||||| |||||||    
T  5219672 taattaagaacttataacataattgattatcatataagtgctcatgtata 5219623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 25497448 - 25497505
Alignment:
Q  493 aagggcctttttggataaacagattaattaagaacttataacataagcgtttatcata 550  Q
    |||| ||| ||||||||||||||| |||||||  |||||| ||||| |||||||||||    
T  25497448 aaggccctatttggataaacagatcaattaagcgcttatagcataaacgtttatcata 25497505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 583
Target Start/End: Original strand, 41088311 - 41088348
Alignment:
Q  546 tcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  41088311 tcatataagtgcttatgtataaactattttcacaacaa 41088348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 572
Target Start/End: Original strand, 46053580 - 46053653
Alignment:
Q  499 ctttttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactat 572  Q
    |||||||||||||||| |||||||||  |||||| ||| ||   |||||||| |||| ||||||||||| ||||    
T  46053580 ctttttggataaacagcttaattaagcgcttatagcatgagtacttatcatataagtacttatgtataagctat 46053653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 575
Target Start/End: Complemental strand, 52504509 - 52504468
Alignment:
Q  534 cataagcgtttatcatacaagtgcttatgtataaactatttt 575  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  52504509 cataagcgtttatcatataagttcttatgcataaactatttt 52504468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 583
Target Start/End: Original strand, 4471079 - 4471135
Alignment:
Q  527 cttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||| |||||||  |||| ||| ||||||||||| |||||||||||||| |||||    
T  4471079 cttatagcataagcaattattatataagtgcttatgcataaactatttttataacaa 4471135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 35131751 - 35132064
Alignment:
Q  19 atttcgggcgccatccaacggtaagttccagtgaatcctttcgcactgccgcattgagattctaagcatgagatcccaaaatctgccacttttacacaca 118  Q
    ||||| || |||||||||||||| ||||| || |||||||| || ||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  35131751 atttcaggagccatccaacggtatgttccggtaaatccttttgcgctgccacattgagattccaagcatgagataccaaaatctgctacttttacacaca 35131850  T
Q  119 tttcttcatccaatagcagattttctgatttgagatccctatgaagtattccttgagaatgaagatactgcattcctcttgcaatgtcaagggctaattc 218  Q
    | |||||||| || || ||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||||| || |||||||     
T  35131851 tatcttcatctaaaaggagattctctgatttgagatccctatgaagtatcccttgagaatgaagatatttcattccccttgcaatgtctagtgctaattt 35131950  T
Q  219 aagaaccagtttgagaggaactgaatgtggtccttgctgtagaaggtattttctcaatgagcctccagccatgtattcagtgattatacagaacactgga 318  Q
     ||||| ||||   | ||||||||||||||| |||| ||  | |||||||| |||||||| || |||||||  || ||||| |||||||||||||||||     
T  35131951 cagaacaagttcatgtggaactgaatgtggttcttgttgatgtaggtatttcctcaatgaaccaccagccaaatactcagtaattatacagaacactggt 35132050  T
Q  319 ggtttcttacaagc 332  Q
    |||||||| |||||    
T  35132051 ggtttcttgcaagc 35132064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 534 - 574
Target Start/End: Complemental strand, 24268310 - 24268270
Alignment:
Q  534 cataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24268310 cataagcgtttatcatacaagtgcttatgtataaactattt 24268270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 575
Target Start/End: Complemental strand, 28843028 - 28842971
Alignment:
Q  518 aattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttt 575  Q
    ||||||| ||||||| |||||||| |||||||| |||||||||||||||| |||||||    
T  28843028 aattaagcacttatatcataagcgcttatcatataagtgcttatgtataagctatttt 28842971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 516 - 574
Target Start/End: Original strand, 31010318 - 31010376
Alignment:
Q  516 ttaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    ||||||||| ||||||||||||||| ||||||||| | ||||||||| ||||| |||||    
T  31010318 ttaattaagtacttataacataagcttttatcatatatgtgcttatgcataaattattt 31010376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 555
Target Start/End: Complemental strand, 48933768 - 48933718
Alignment:
Q  505 ggataaacagattaattaagaacttataacataagcgtttatcatacaagt 555  Q
    |||||||||||||||||||| |||||||||||||| || ||||||| ||||    
T  48933768 ggataaacagattaattaagcacttataacataagtgtctatcatataagt 48933718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 581
Target Start/End: Complemental strand, 1288959 - 1288905
Alignment:
Q  527 cttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaac 581  Q
    |||||| | ||||||||||||||| |||||||||||||||  |||||| ||||||    
T  1288959 cttatagcgtaagcgtttatcatataagtgcttatgtatacgctatttctacaac 1288905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 574
Target Start/End: Original strand, 36199995 - 36200073
Alignment:
Q  496 ggcctttttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    ||||| |||||||||| || |||| ||||  ||||||||||||| | |||||||| |||| ||||||||| | ||||||    
T  36199995 ggcctgtttggataaaaagtttaaataagcgcttataacataagagcttatcatataagttcttatgtatcagctattt 36200073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 574
Target Start/End: Complemental strand, 52324050 - 52323992
Alignment:
Q  516 ttaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    |||||||||  |||||| |||||| ||||| |||| |||| ||||||||||||||||||    
T  52324050 ttaattaagtgcttatagcataagtgtttagcatataagtacttatgtataaactattt 52323992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 583
Target Start/End: Complemental strand, 16790503 - 16790462
Alignment:
Q  542 tttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||| |||||||||||||||| ||||||||| |||||    
T  16790503 tttatcatataagtgcttatgtataagctatttttataacaa 16790462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 585
Target Start/End: Complemental strand, 44747305 - 44747272
Alignment:
Q  552 aagtgcttatgtataaactatttttacaacaaga 585  Q
    |||||||||||||||||||||||||| |||||||    
T  44747305 aagtgcttatgtataaactatttttataacaaga 44747272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 567
Target Start/End: Complemental strand, 48272029 - 48271968
Alignment:
Q  506 gataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||||||| |||||||||| |||| ||||||||   ||| |||| ||||||||||||||||    
T  48272029 gataaacagcttaattaagagcttaaaacataagtacttaacatataagtgcttatgtataa 48271968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 567
Target Start/End: Complemental strand, 16790254 - 16790210
Alignment:
Q  523 agaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    |||| ||||| ||||||||||||||||| |||||||||| |||||    
T  16790254 agaagttatagcataagcgtttatcatataagtgcttatatataa 16790210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 538
Target Start/End: Complemental strand, 49845707 - 49845671
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataa 538  Q
    |||||||||||| |||||||||| |||||||||||||    
T  49845707 tttggataaacaaattaattaagcacttataacataa 49845671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 583
Target Start/End: Original strand, 26516181 - 26516262
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||||  |||||||||  |||||| |||||||| |||||||| |||||||||||||||| |||||| || |||||    
T  26516181 tttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaa 26516262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 502 - 583
Target Start/End: Original strand, 32172536 - 32172617
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||||   ||||||||  |||| | |||||||| |||||||||||| ||||||||||||||||||| ||||||||    
T  32172536 tttggataaacaacataattaagcgcttacagcataagcgcttatcatacaagagcttatgtataaactatttctacaacaa 32172617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 583
Target Start/End: Complemental strand, 29115400 - 29115319
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||||  ||||||| |  |||||| ||||| | ||||||||| |||||||||||||||| |||||| ||||||||    
T  29115400 tttggataaacactttaattacgcgcttatagcataaacatttatcataaaagtgcttatgtataagctatttctacaacaa 29115319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 583
Target Start/End: Complemental strand, 20982322 - 20982241
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||||  || ||||||  |||||| |||||| | |||||||| |||||||||||||||| |||||| || |||||    
T  20982322 tttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaa 20982241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 583
Target Start/End: Complemental strand, 19113271 - 19113223
Alignment:
Q  535 ataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||| |||||||||| || ||||||||||||||||||||||| |||||    
T  19113271 ataagtgtttatcatataattgcttatgtataaactatttttataacaa 19113223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 582
Target Start/End: Original strand, 19177403 - 19177442
Alignment:
Q  543 ttatcatacaagtgcttatgtataaactatttttacaaca 582  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  19177403 ttatcatataagtgcttatgtataaactatttctacaaca 19177442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 572
Target Start/End: Original strand, 11790866 - 11790936
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactat 572  Q
    ||||| |||| || ||||||||   ||| ||||||||| |||||||||| ||||||||||| |||||||||    
T  11790866 tttgggtaaatagcttaattaactgcttgtaacataagtgtttatcatataagtgcttatgcataaactat 11790936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 544 - 574
Target Start/End: Complemental strand, 38813238 - 38813208
Alignment:
Q  544 tatcatacaagtgcttatgtataaactattt 574  Q
    |||||||||||||||||||||||||||||||    
T  38813238 tatcatacaagtgcttatgtataaactattt 38813208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 567
Target Start/End: Complemental strand, 14716657 - 14716592
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    |||||||| |||| |||||||||  |||||| ||||||  ||| ||||| ||||||||||||||||    
T  14716657 tttggatatacagcttaattaagtgcttatagcataaggatttgtcatataagtgcttatgtataa 14716592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 642
Target Start/End: Original strand, 32197733 - 32197774
Alignment:
Q  601 cataagttattctgaagaacttgtgaaaataagatgaaaaca 642  Q
    |||||| ||| ||||||||||| |||||||||||||||||||    
T  32197733 cataagctatcctgaagaacttatgaaaataagatgaaaaca 32197774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 583
Target Start/End: Original strand, 3951541 - 3951581
Alignment:
Q  543 ttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||||| ||||||||||||||||| ||||| ||||||||    
T  3951541 ttatcatataagtgcttatgtataaaatatttatacaacaa 3951581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 583
Target Start/End: Complemental strand, 37063260 - 37063180
Alignment:
Q  503 ttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||||||||| ||||| ||  ||||||| |||||  | || ||||| || |||||||||||||||||||| || |||||    
T  37063260 ttggataaacagcttaatcaactacttatagcataaatgcttgtcatataaatgcttatgtataaactatttctataacaa 37063180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 11393553 - 11393481
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    ||||||||||||| ||||||||| ||||||| || ||| |||||||||| |||||||||| ||||| ||||||    
T  11393553 tttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctattt 11393481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 11410214 - 11410142
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    ||||||||||||| ||||||||| ||||||| || ||| |||||||||| |||||||||| ||||| ||||||    
T  11410214 tttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctattt 11410142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 600 - 645
Target Start/End: Complemental strand, 42621433 - 42621388
Alignment:
Q  600 tcataagttattctgaagaacttgtgaaaataagatgaaaacaact 645  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||    
T  42621433 tcataagttattctggagaacttgtgaaaataagctgaaaacaact 42621388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 577
Target Start/End: Original strand, 3102576 - 3102651
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattttta 577  Q
    ||||||||||||| || ||||||  |||| |||||||  |||||||||| || ||||||||||||| |||||||||    
T  3102576 tttggataaacagctttattaagcgcttaaaacataaatgtttatcatataactgcttatgtataagctattttta 3102651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 583
Target Start/End: Original strand, 29430629 - 29430720
Alignment:
Q  492 taagggcctttttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||| ||| |||||||||||| ||| |||| | |||| ||  |||||||||||||||||||| | |||||||||| |||||| || |||||    
T  29430629 taaggccctatttggataaacaaatttattaggcacttgtagtataagcgtttatcatacaagggtttatgtataagctatttctataacaa 29430720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 583
Target Start/End: Complemental strand, 33197426 - 33197345
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||||  | ||||||  ||||||||||||| || |||||||| |||||||||| ||||| |||||| || |||||    
T  33197426 tttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttatctataagctatttctataacaa 33197345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 583
Target Start/End: Original strand, 10190203 - 10190243
Alignment:
Q  543 ttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  10190203 ttatcatataagtgcttatgtataaactatttttataacaa 10190243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 571
Target Start/End: Complemental strand, 17221713 - 17221658
Alignment:
Q  516 ttaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaacta 571  Q
    ||||||||| ||||||| ||||||| ||||||||  ||||| ||||||||||||||    
T  17221713 ttaattaagcacttatagcataagcctttatcatttaagtgtttatgtataaacta 17221658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 4550660 - 4550725
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||||||||||  |||||||| |||||||| ||||| |  |||||| | ||||||||||||||||    
T  4550660 tttggataaacaacttaattaacaacttatagcataatctcttatcacataagtgcttatgtataa 4550725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 583
Target Start/End: Complemental strand, 9878094 - 9878045
Alignment:
Q  534 cataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||| |||| |||||| ||||||||||||||||||||||| | ||||||    
T  9878094 cataaacgttaatcatataagtgcttatgtataaactatttatgcaacaa 9878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 574
Target Start/End: Complemental strand, 11393827 - 11393770
Alignment:
Q  517 taattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    |||||||| ||||||| ||||| | ||||||||  |||||||||||||||| ||||||    
T  11393827 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctattt 11393770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 574
Target Start/End: Complemental strand, 11410488 - 11410431
Alignment:
Q  517 taattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    |||||||| ||||||| ||||| | ||||||||  |||||||||||||||| ||||||    
T  11410488 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctattt 11410431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 18884764 - 18884829
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||||||||||| ||||| ||| ||||||| ||| ||  ||||||||| ||||||| ||||||||    
T  18884764 tttggataaacagcttaatcaagcacttatagcattagtttttatcatataagtgctcatgtataa 18884829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 583
Target Start/End: Original strand, 42974235 - 42974316
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||| ||  |||||||||| |||||| ||||| |  ||||||||  ||||||| |||||||||||||| || |||||    
T  42974235 tttggataagcaacttaattaagagcttatagcataaacacttatcatattagtgcttgtgtataaactatttctataacaa 42974316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 17380483 - 17380531
Alignment:
Q  535 ataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||| ||||||  |||||||||| || |||||||||||||||||    
T  17380483 ataagcgttaatcataggagtgcttatgcatgaactatttttacaacaa 17380531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 583
Target Start/End: Complemental strand, 1259 - 1180
Alignment:
Q  504 tggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||  ||||||||| ||||||| ||||| ||| ||||||| |||||||||||||||| |||||| || |||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaa 1180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 583
Target Start/End: Original strand, 2716 - 2795
Alignment:
Q  504 tggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||  ||||||||| ||||||| ||||| ||| ||||||| |||||||||||||||| |||||| || |||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaa 2795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 499 - 574
Target Start/End: Original strand, 12972736 - 12972811
Alignment:
Q  499 ctttttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    ||||||||| |||||  |||||||||  |||||| ||||||| ||||||||| |||||||||||||||| ||||||    
T  12972736 ctttttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagctattt 12972811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 31884477 - 31884542
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||||||||||  | ||||||| ||||||| |||||||| ||||||||||||||| |||||||||    
T  31884477 tttggataaacaactcaattaagcacttatagcataagcgcttatcatacaagtgcatatgtataa 31884542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 577
Target Start/End: Original strand, 6918915 - 6918989
Alignment:
Q  503 ttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattttta 577  Q
    |||||||||||| ||| |||||    |||| |||||| |||||||||| |||||||||||||||| |||||||||    
T  6918915 ttggataaacagcttacttaagtgtctatagcataagtgtttatcatataagtgcttatgtataagctattttta 6918989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 583
Target Start/End: Original strand, 14482085 - 14482166
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||| |||||||  |||||||||  |||||| ||| || | |||||||| ||||||||||||||||||||||| || |||||    
T  14482085 tttgaataaacaatttaattaagttcttatagcattagtgcttatcatataagtgcttatgtataaactatttctataacaa 14482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 566
Target Start/End: Original strand, 8062123 - 8062187
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtata 566  Q
    ||||||||| ||  |||||||||  ||||||  |||||||||||||||| |||||||||||||||    
T  8062123 tttggataagcaacttaattaagcgcttatactataagcgtttatcatagaagtgcttatgtata 8062187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 567
Target Start/End: Complemental strand, 35220890 - 35220823
Alignment:
Q  500 tttttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||||||||||||| ||||||||  ||||| |  ||||| | |||||||| ||||||||||||||||    
T  35220890 tttttggataaacagcttaattaaatacttacaggataagtgattatcatataagtgcttatgtataa 35220823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 577
Target Start/End: Complemental strand, 41336832 - 41336757
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattttta 577  Q
    ||||||||||||  ||||||||   |||||| ||||||||||||||| | || ||||||||||||||  |||||||    
T  41336832 tttggataaacaacttaattaattgcttatagcataagcgtttatcaaataaatgcttatgtataaatcattttta 41336757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 550
Target Start/End: Original strand, 7008510 - 7008560
Alignment:
Q  500 tttttggataaacagattaattaagaacttataacataagcgtttatcata 550  Q
    ||||||||||||||  |||||||||  |||||| |||||||||||||||||    
T  7008510 tttttggataaacaacttaattaagcgcttatagcataagcgtttatcata 7008560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 571
Target Start/End: Original strand, 10488407 - 10488444
Alignment:
Q  534 cataagcgtttatcatacaagtgcttatgtataaacta 571  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  10488407 cataagcgtttatcatataagtgtttatgtataaacta 10488444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 567
Target Start/End: Complemental strand, 30043904 - 30043839
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||| |||||||||||| ||||  | |||| |||||||||||||| || |||| |||||||||||    
T  30043904 tttggttaaacagattaactaagtgcatatagcataagcgtttatcttataagttcttatgtataa 30043839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 575
Target Start/End: Complemental strand, 30172785 - 30172753
Alignment:
Q  543 ttatcatacaagtgcttatgtataaactatttt 575  Q
    ||||||||||||||||||||||||| |||||||    
T  30172785 ttatcatacaagtgcttatgtataagctatttt 30172753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 583
Target Start/End: Original strand, 870962 - 871009
Alignment:
Q  536 taagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||    
T  870962 taagcgcttatcatataagtgcttatgtataaactatttttataacaa 871009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 572
Target Start/End: Complemental strand, 24263326 - 24263256
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactat 572  Q
    ||||||||||||| |||||||||  |||||| ||||| |||||| |||| ||||| |||||||||| ||||    
T  24263326 tttggataaacagtttaattaagtgcttatagcataaacgtttagcatataagtgtttatgtataacctat 24263256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 567
Target Start/End: Complemental strand, 44375524 - 44375459
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||||||||||| ||||||||| ||||||||| |||| ||||||| || |||| |||||| ||||    
T  44375524 tttggataaacagtttaattaagcacttataacctaagtgtttatcttataagttcttatggataa 44375459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 576
Target Start/End: Complemental strand, 29794111 - 29794035
Alignment:
Q  500 tttttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattttt 576  Q
    ||||||||||||||| |||||||||  |||||| |||||| |||| ||||| | ||| |||||||||  ||||||||    
T  29794111 tttttggataaacagcttaattaagcgcttatagcataagtgtttttcatatatgtgtttatgtataggctattttt 29794035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 577
Target Start/End: Original strand, 17420086 - 17420161
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattttta 577  Q
    ||||||||||||| |||||||||   |||||  ||||||| ||| || | |||| |||||||||||||||||||||    
T  17420086 tttggataaacagcttaattaagtgattatagtataagcgcttagcacataagtacttatgtataaactattttta 17420161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 574
Target Start/End: Original strand, 6659592 - 6659658
Alignment:
Q  508 taaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    ||||||| ||||||||| |||||   ||| |||  |||||||| |||||||||||||||||||||||    
T  6659592 taaacagtttaattaagcacttaaggcatcagcaattatcatataagtgcttatgtataaactattt 6659658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 566
Target Start/End: Original strand, 44940240 - 44940290
Alignment:
Q  516 ttaattaagaacttataacataagcgtttatcatacaagtgcttatgtata 566  Q
    ||||||||||||||||||||||| || |||||||| || ||| ||||||||    
T  44940240 ttaattaagaacttataacataatcgcttatcatataattgcgtatgtata 44940290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 3223572 - 3223637
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    ||||||||| ||| ||||||||| |||| || ||||||||||| | ||| || |||||||||||||    
T  3223572 tttggataagcagtttaattaagcacttttagcataagcgtttgtaatataaatgcttatgtataa 3223637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 9506921 - 9506966
Alignment:
Q  527 cttataacataagcgtttatcatacaagtgcttatgtataaactat 572  Q
    |||||| ||||||| ||||||||| ||||||||||| |||||||||    
T  9506921 cttatagcataagcatttatcatataagtgcttatgaataaactat 9506966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 600 - 649
Target Start/End: Complemental strand, 38867889 - 38867840
Alignment:
Q  600 tcataagttattctgaagaacttgtgaaaataagatgaaaacaactgatg 649  Q
    |||||||||||  |||||||||| |||||||||| | |||||||||||||    
T  38867889 tcataagttatcttgaagaacttatgaaaataagctaaaaacaactgatg 38867840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 583
Target Start/End: Complemental strand, 43029587 - 43029507
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||||  ||||||||| |||| || |||||| | |||| |||  ||||||||||||||| |||||| ||||||||    
T  43029587 tttggataaacaatttaattaagcacttttagcataagtgattat-atatgagtgcttatgtataacctatttctacaacaa 43029507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 583
Target Start/End: Complemental strand, 5628753 - 5628672
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||||||||   ||||||||| || ||||||| ||| | |||||||||||| ||||||| |||| ||||||||| |||||    
T  5628753 tttggataaactacttaattaagcacatataacagaagggcttatcatacaagggcttatgcataagctatttttataacaa 5628672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 583
Target Start/End: Original strand, 45078208 - 45078257
Alignment:
Q  534 cataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| |||||    
T  45078208 cataaacgtttatcatataagtgcttatgtataagctatttttataacaa 45078257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 36598508 - 36598436
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    ||||||||||||  |||||||||||||||   |||||| ||||||||||  |||| |||||||||| ||||||    
T  36598508 tttggataaacaacttaattaagaacttacggcataagtgtttatcatattagtgtttatgtataagctattt 36598436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 39566375 - 39566303
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    ||||| ||||||| ||||||||| |||||||||||||| | |||||| | || || |||||| ||||||||||    
T  39566375 tttgggtaaacagtttaattaagcacttataacataagtgcttatcaaataaatgattatgtttaaactattt 39566303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 583
Target Start/End: Original strand, 30133934 - 30134013
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||||  | ||||||   |||||| |||||||| ||||||||  |||| |||||||||| |||||||||||||||    
T  30133934 tttggataaacaactcaattaaatgcttatagcataagcgcttatcata--agtgtttatgtataagctatttttacaacaa 30134013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 583
Target Start/End: Complemental strand, 22388091 - 22388010
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    ||||||||||||  |||||||||  |||||||||||| |  |||||||  ||||||||||| |||| |||||| || |||||    
T  22388091 tttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaa 22388010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Complemental strand, 29574754 - 29574713
Alignment:
Q  536 taagcgtttatcatacaagtgcttatgtataaactattttta 577  Q
    ||||||||||||||| || ||||||||||||| |||||||||    
T  29574754 taagcgtttatcatataaatgcttatgtataagctattttta 29574713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 600 - 645
Target Start/End: Original strand, 44821971 - 44822016
Alignment:
Q  600 tcataagttattctgaagaacttgtgaaaataagatgaaaacaact 645  Q
    ||||||| ||||||| ||||||| |||||||||| |||||||||||    
T  44821971 tcataagctattctggagaacttatgaaaataagttgaaaacaact 44822016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 583
Target Start/End: Original strand, 7274385 - 7274425
Alignment:
Q  543 ttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||||| |||||||||| |||||||||||| ||||||||    
T  7274385 ttatcataaaagtgcttatatataaactatttctacaacaa 7274425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 576
Target Start/End: Complemental strand, 3217376 - 3217303
Alignment:
Q  503 ttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattttt 576  Q
    |||| |||||| ||| ||||||  ||||||  ||||||| |||||||| |||||||||||||||| ||||||||    
T  3217376 ttggttaaacaaatttattaagtgcttatagtataagcgattatcatataagtgcttatgtataagctattttt 3217303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 574
Target Start/End: Complemental strand, 5637386 - 5637342
Alignment:
Q  530 ataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    |||||| |||||||||||||| |||||||||| ||||||||||||    
T  5637386 ataacaaaagcgtttatcatataagtgcttatttataaactattt 5637342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 559
Target Start/End: Complemental strand, 9833282 - 9833227
Alignment:
Q  504 tggataaacagattaattaagaacttataacataagcgtttatcatacaagtgctt 559  Q
    ||||||||||  |||||||||   ||||||||||||||||||||||| ||||||||    
T  9833282 tggataaacaacttaattaagtgtttataacataagcgtttatcatataagtgctt 9833227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 574
Target Start/End: Complemental strand, 31672630 - 31672583
Alignment:
Q  527 cttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    |||||| | |||||| |||||||||||||| |||||||||||||||||    
T  31672630 cttatagcttaagcgattatcatacaagtgtttatgtataaactattt 31672583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 572
Target Start/End: Original strand, 3155059 - 3155129
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactat 572  Q
    ||||||||||||  ||| |||||  |||||| ||||||||||||||||| || || |||||||||| ||||    
T  3155059 tttggataaacaacttatttaagcgcttatagcataagcgtttatcatataaatggttatgtataagctat 3155129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 567
Target Start/End: Original strand, 5623060 - 5623118
Alignment:
Q  509 aaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataa 567  Q
    |||||| |||| |||| | ||||| ||||| ||||||||||| ||||||||||||||||    
T  5623060 aaacagcttaactaagcatttatagcataatcgtttatcatataagtgcttatgtataa 5623118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 574
Target Start/End: Complemental strand, 7351792 - 7351723
Alignment:
Q  503 ttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    |||||||||||| |||| ||||   ||||| |||||||  |||||||| || ||||||||||||||||||||    
T  7351792 ttggataaacaggttaactaagt--ttatagcataagctcttatcatataaatgcttatgtataaactattt 7351723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 18264247 - 18264295
Alignment:
Q  535 ataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||| ||||||||||| ||||||||||||||   |||||||||||||||    
T  18264247 ataaacgtttatcatataagtgcttatgtatgtgctatttttacaacaa 18264295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 583
Target Start/End: Complemental strand, 31668847 - 31668791
Alignment:
Q  527 cttataacataagcgtttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||| |||||||  |||||||| |||||||||||||||| |||||| || |||||    
T  31668847 cttatagcataagcaattatcatataagtgcttatgtataagctatttctataacaa 31668791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 32386270 - 32386214
Alignment:
Q  518 aattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    ||||||| |||||||  ||||  |||||||||| |||||||||||||||| ||||||    
T  32386270 aattaagcacttatagtataaaagtttatcatataagtgcttatgtataagctattt 32386214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 600 - 640
Target Start/End: Complemental strand, 32387113 - 32387073
Alignment:
Q  600 tcataagttattctgaagaacttgtgaaaataagatgaaaa 640  Q
    ||||||||||||||||||| ||| |||||||||| ||||||    
T  32387113 tcataagttattctgaagagcttatgaaaataagctgaaaa 32387073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 32578137 - 32578065
Alignment:
Q  502 tttggataaacagattaattaagaacttataacataagcgtttatcatacaagtgcttatgtataaactattt 574  Q
    |||||||||||||||||| |||  ||| ||| |||||  | |||||||| |||||||||||| ||| ||||||    
T  32578137 tttggataaacagattaagtaaacactcatagcataaatgattatcatataagtgcttatgtgtaagctattt 32578065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 583
Target Start/End: Complemental strand, 6783 - 6743
Alignment:
Q  543 ttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||||| ||||||||||||||||||||||| || |||||    
T  6783 ttatcatataagtgcttatgtataaactatttctataacaa 6743  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 583
Target Start/End: Complemental strand, 116702 - 116662
Alignment:
Q  543 ttatcatacaagtgcttatgtataaactatttttacaacaa 583  Q
    |||||||| ||||||||||||||||||||||| || |||||    
T  116702 ttatcatataagtgcttatgtataaactatttctataacaa 116662  T

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