View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_28 (Length: 644)
Name: NF8901_low_28
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 33413527 - 33413777
Alignment:
| Q |
19 |
gcctatgatctcaactcagtagtagttcttcttatgggacgtcttttctgcgggtaagtaaagatacacttaatactcacaagtttcatactttccataa |
118 |
Q |
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| T |
33413527 |
gcctatgatctcaactcagtagtagttcttcttatgggacgtattttctgcgtgtaagtaaagatacacttaatactcacaagtttcatactttccataa |
33413626 |
T |
|
| Q |
119 |
attttttattacatgattataatgtttttgttcttatcttcttagtaaagcattcttggtatgtacacacatattcaggaacatgtttatcaattacttt |
218 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33413627 |
attttttattacatgattacaatgtttttgttcttatcttcttagtaaagcattcttgatatgtacgcacatattcaggaacatgtttatcaattacttt |
33413726 |
T |
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| Q |
219 |
gcaagaaatttcatttttgaactttccaactaggttacaattagcatgtca |
269 |
Q |
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| T |
33413727 |
gcaagaaatttcatttttgaactttccaactaggttacaattagcatgtca |
33413777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 33420672 - 33420948
Alignment:
| Q |
19 |
gcctatgatctcaactcagtagtagttcttcttatgggacgtcttttctgcgggtaagtaaagatacacttaatactcacaagtttcatactttccataa |
118 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||||||| ||||| |||||||||| |||| |
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| T |
33420672 |
gcctatcatctcaactcagtagtagttcttcttatgggacgccttttctgcgagtaagtaaa-atacacataatactctcaagtatcatactttcaataa |
33420770 |
T |
|
| Q |
119 |
attttttattacatgattataatgtttttgttcttatcttcttagtaaagcattcttggtatgtacacacatattcaggaacatgtttatcaattacttt |
218 |
Q |
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| T |
33420771 |
aaatttcatgacatgactatgatgtttttatttttatcttcttagtaaaacaaatatggtatgtacgcacgtattcagaaatgtgtttatgaattacttt |
33420870 |
T |
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| Q |
219 |
gcaagaaatttcatttttgaactttccaactaggttacaattagcatgtcattgcggaagagatacaatatatgttca |
296 |
Q |
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| T |
33420871 |
gcaacaaattacatgtttgaactttacaattaggttacagttagcatgacattgtggaagagatacaacacatgttca |
33420948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 75 - 272
Target Start/End: Original strand, 33491797 - 33491993
Alignment:
| Q |
75 |
agtaaagatacacttaatactcacaagtttcatactttccataaattttttattacatgattataatgtttttgttcttatcttcttagtaaagcattct |
174 |
Q |
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| T |
33491797 |
agtaaatatacacttaatactcacaagtttcatactttccataaaaattt-atgacatgactataatgtttttgctcttatcttctcagtaaaacattcc |
33491895 |
T |
|
| Q |
175 |
tggtatgtacacacatattcaggaacatgtttatcaattactttgcaagaaatttcatttttgaactttccaactaggttacaattagcatgtcattg |
272 |
Q |
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| T |
33491896 |
tggtatgtacgcacatactcaggaatgtgtttttaaattactttgcaacaaattccatttttgaactttacaactaggttacaattagcatgtcattg |
33491993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 329 - 561
Target Start/End: Original strand, 33491993 - 33492247
Alignment:
| Q |
329 |
gttgattcgatgacgctgaacatgatgtcattttgacatgaagcagaaactaagataggttaaaaattagaaac----------------------tggt |
406 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
33491993 |
gttgatccgatgacgctgaatatgatgtcattttgacatgaagcagaaactgagataggttaaaaattagaaactagtatgacatgaatcagaaactggt |
33492092 |
T |
|
| Q |
407 |
atctcagcaaggtac-atgtattcattttgtcatttgatgtcattttggtatgtcagttgggtttcatcaaggctttctcaaacctttaatagtggatga |
505 |
Q |
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|| | |||||| ||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | |
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| T |
33492093 |
atgttagcaagataccatgtattcattttgtc-tatgatgtcattttggtatgtcagttgggtttcatcaaggctctctcaaacctttaataatggagaa |
33492191 |
T |
|
| Q |
506 |
ttactgtcaaccaaagccgaaactctagctggagtaattgaagagggtacaataaa |
561 |
Q |
| |
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||||||||||| |||||| |||| ||||| ||| ||||| | | ||||||||||| |
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| T |
33492192 |
ttactgtcaactgaagccggaactttagctcgagcaattgcatatggtacaataaa |
33492247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 504 - 624
Target Start/End: Complemental strand, 28809504 - 28809384
Alignment:
| Q |
504 |
gattactgtcaaccaaagccgaaactctagctggagtaattgaagagggtacaataaaaatttcagggcatttcagttaaagtaaactactcaatccaac |
603 |
Q |
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|||||||||||||| |||||| |||||||||| ||||||||| ||| |||||||||| |||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
28809504 |
gattactgtcaaccgaagccggaactctagctcgagtaattgcagatggtacaataacaatttcagggtatttcagtgaaagtaaactactcaatacaac |
28809405 |
T |
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| Q |
604 |
cttacttccttcactcctcat |
624 |
Q |
| |
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|||||| ||| |||||||||| |
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| T |
28809404 |
cttactacctgcactcctcat |
28809384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 28812014 - 28811944
Alignment:
| Q |
19 |
gcctatgatctcaactcagtagtagttcttcttatgggacgtcttttctgcgggtaagtaaagatacactt |
89 |
Q |
| |
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||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
28812014 |
gcctatgatcttaactcggtagcagttcttcttatgggacgccttttctgcgggtaagtaaagttacactt |
28811944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 27787082 - 27787222
Alignment:
| Q |
177 |
gtatgtacacacatattcaggaacatgtttatcaattactttgcaagaaatttcatttttgaactttccaactaggttacaattagcatgtcattgcgga |
276 |
Q |
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||||| ||||||||||||||||| ||||||| || || ||||||| ||||| ||| || ||||| | ||||| ||| || ||| ||| ||||| ||| |
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| T |
27787082 |
gtatgaacacacatattcaggaatctgtttatgaaatattttgcaacaaattccatgttagaactatacaacttagtttcagatagtatggcattgtgga |
27787181 |
T |
|
| Q |
277 |
agagatacaatatatgttcaaaggctcacataaaaaattgg |
317 |
Q |
| |
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|| | | ||| | ||| ||||||||| ||||| |||||||| |
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| T |
27787182 |
agtgctgcaacacatgatcaaaggcttacatacaaaattgg |
27787222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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