View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_3 (Length: 1024)

Name: NF8901_low_3
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_3
NF8901_low_3
[»] chr4 (4 HSPs)
chr4 (8-375)||(23210832-23211199)
chr4 (440-791)||(23211264-23211611)
chr4 (945-990)||(23211605-23211650)
chr4 (952-1001)||(43072205-43072254)
[»] chr2 (2 HSPs)
chr2 (947-993)||(36394574-36394620)
chr2 (493-523)||(20650746-20650776)
[»] chr8 (2 HSPs)
chr8 (75-112)||(38259343-38259380)
chr8 (301-343)||(41038977-41039019)
[»] chr7 (1 HSPs)
chr7 (935-1004)||(45971687-45971756)
[»] chr6 (1 HSPs)
chr6 (947-991)||(30475204-30475248)
[»] chr3 (3 HSPs)
chr3 (946-1001)||(1860162-1860218)
chr3 (947-993)||(2149476-2149522)
chr3 (264-356)||(47157597-47157690)
[»] chr1 (1 HSPs)
chr1 (947-993)||(26631671-26631719)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 23210832 - 23211199
Alignment:
Q  8 tgagatggacatcacatcttaacctaaatcttaagacattgagttatgagtcttataacttatatagtgttcaacatccattttttcatctaatatgaga 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23210832 tgagttggacatcacatcttaacctaaatcttaagacattgagttacgggtcttataacttatatagtgttcaacatccattttttcatctaatatgaga 23210931  T
Q  108 cttctgcgcacacttgttacataataatctctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgcccta 207  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23210932 cttctgcgtacacttgttacataataacctctcatccatccattcatatgtgtacatgctcctcctcaattggccgcactaaacatgacacattgcccta 23211031  T
Q  208 ccattattgttaggaagacttccggcataatgagtcattcggcgaaccaatgactatgatatcactgtaggatcatcaggggagctcgagaaacatccac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23211032 ccattattgttaggaagacttccggcataatgagtcattcggcgaaccaatgactatgatatcactgtaggatcatcaggggagctcgagaaacatccac 23211131  T
Q  308 attgggtcaagaataaccatataaatgagttggacacttcaacttaaccctacaagtatctacgcaac 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23211132 attgggtcaagaataaccatataaatgagttggacacttcaacttaaccctacaagtatctacgcaac 23211199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 440 - 791
Target Start/End: Original strand, 23211264 - 23211611
Alignment:
Q  440 ggataacaatgtttgaaagatgatgtacatgttagatatgtatccatcatttatttattttaggcttaatagcagttttacccctttaactttcttaatt 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23211264 ggataacaatgtttgaaagatgatgtacatgttagatatgtatccatcatttatttattttaggcttaatagcagttttacccctttaactttcttaatt 23211363  T
Q  540 tgagagtttgggatggtaatcaaaaacataattattacacgagaagaacagcctcttcattgtaccaaaaagataaaaagcctcttcatgccttttgtgt 639  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23211364 tgagagtttgggatggtaat-aaaaacataattattacacgagaagaacagcctcttcattgtaccaaaaagataaaaagcctcttcatgccttttgtgt 23211462  T
Q  640 gtactcttcattttgctttaatttggaaatctactccttctgaccaatttatgagaagaaaggtaaccatgtgaaatcaacgagaattttatgcacttct 739  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23211463 gtactcttcattttgctttaatttggaaatctactccttctgaccaatttatgagaagaaaggtaaccatgtgaaatcaacgagaattttatgcaattct 23211562  T
Q  740 ctctctgtgattgatttattttaattattattactggtcagctagtatgttt 791  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  23211563 ctctctgtgattgatttatttta---attattactggtcagctagtatgttt 23211611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 945 - 990
Target Start/End: Original strand, 23211605 - 23211650
Alignment:
Q  945 tatgtttatctctaactctcttactttttatcttctacaacttaca 990  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23211605 tatgtttatctctaactctcttactttttatcttctacaacttaca 23211650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 952 - 1001
Target Start/End: Original strand, 43072205 - 43072254
Alignment:
Q  952 atctctaactctcttactttttatcttctacaacttacacacgtttcaaa 1001  Q
    ||||||| |||||| ||||||||||||||||| ||||||||| |||||||    
T  43072205 atctctatctctctaactttttatcttctacagcttacacacatttcaaa 43072254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 947 - 993
Target Start/End: Original strand, 36394574 - 36394620
Alignment:
Q  947 tgtttatctctaactctcttactttttatcttctacaacttacacac 993  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  36394574 tgtttatctctatctctcttactttttatcttctaccactcacacac 36394620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 493 - 523
Target Start/End: Complemental strand, 20650776 - 20650746
Alignment:
Q  493 tttattttaggcttaatagcagttttacccc 523  Q
    |||||||||||||||||||||||||||||||    
T  20650776 tttattttaggcttaatagcagttttacccc 20650746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 38259343 - 38259380
Alignment:
Q  75 tgttcaacatccattttttcatctaatatgagacttct 112  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  38259343 tgttcaacatctattttttcatctaatatgagacttct 38259380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 41038977 - 41039019
Alignment:
Q  301 catccacattgggtcaagaataaccatataaatgagttggaca 343  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||    
T  41038977 catccgcattgggtcaagaataaccatgtaaatgagttagaca 41039019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 935 - 1004
Target Start/End: Original strand, 45971687 - 45971756
Alignment:
Q  935 tgacatcgtttatgtttatctctaactctcttactttttatcttctacaacttacacacgtttcaaagat 1004  Q
    ||||||| | |||||||||||||| ||||| ||||||| ||||||||  ||||||| |||||| ||||||    
T  45971687 tgacatcttatatgtttatctctatctctcatacttttcatcttctatgacttacaaacgtttgaaagat 45971756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 947 - 991
Target Start/End: Complemental strand, 30475248 - 30475204
Alignment:
Q  947 tgtttatctctaactctcttactttttatcttctacaacttacac 991  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||    
T  30475248 tgtttatctctatatctcttactttttatcttttacaacttacac 30475204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 946 - 1001
Target Start/End: Original strand, 1860162 - 1860218
Alignment:
Q  946 atgtttatctctaactctcttactttt-tatcttctacaacttacacacgtttcaaa 1001  Q
    ||||||||||||| ||||| ||||||| |||||||||||||| |||||| |||||||    
T  1860162 atgtttatctctagctctcatacttttttatcttctacaactaacacacatttcaaa 1860218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 947 - 993
Target Start/End: Original strand, 2149476 - 2149522
Alignment:
Q  947 tgtttatctctaactctcttactttttatcttctacaacttacacac 993  Q
    ||||||||| || |||||||||||||||||| |||||| ||||||||    
T  2149476 tgtttatctttatctctcttactttttatctactacaatttacacac 2149522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 47157690 - 47157597
Alignment:
Q  264 tgatatcactgtaggatcatcaggggagctcga-gaaacatccacattgggtcaagaataaccatataaatgagttggacacttcaacttaacc 356  Q
    ||||| |||||| ||||||| ||||||||  || ||| |||||| ||||||||||||| || || | |||||||||||| ||| || |||||||    
T  47157690 tgataccactgttggatcatgaggggagccagatgaatcatccaaattgggtcaagaacaatcacacaaatgagttggatactgcatcttaacc 47157597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 947 - 993
Target Start/End: Original strand, 26631671 - 26631719
Alignment:
Q  947 tgtttatctctaact--ctcttactttttatcttctacaacttacacac 993  Q
    |||||||||||| ||  |||||||||||||| |||||||||||||||||    
T  26631671 tgtttatctctatcttactcttactttttatattctacaacttacacac 26631719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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