View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_30 (Length: 643)

Name: NF8901_low_30
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_30
NF8901_low_30
[»] chr6 (1 HSPs)
chr6 (6-630)||(18269935-18270554)


Alignment Details
Target: chr6 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 6 - 630
Target Start/End: Complemental strand, 18270554 - 18269935
Alignment:
Q  6 atggacatcactgtttttgatacaggaaaccctatagattttatccaagtaccaaacaattggcttgtgccgatacaacacattcacctaggaaaacaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270554 atggacatcactgtttttgatacaggaaaccctatagattttatccaagtatcaaacaattggcttgtgccgatacaacacattcacctaggaaaacaaa 18270455  T
Q  106 tgcaccccccacatcacacagagagggagaaggttcattttttacttcacggggttgaaagaaagattttatcatggccttgcacccacttgcaaagagg 205  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18270454 tgcaccccccacatcacacagagagg-agaaggttcattttttacttcacggggttgaaagaaagattttatcatgcccttgcacccacttgcaaagagg 18270356  T
Q  206 tcttcaccagctgagcttttcaacatcttacatcgctcacttaatccgcttatcaaaaacaaaaaccatttaattcttataacttcacttcaaatttaat 305  Q
    |||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270355 tcttcaccagctgagcttgtcaacatcttacatcgctca----atccgcttatcaaaaacaaaaaccatttaattcttataacttcacttcaaatttaat 18270260  T
Q  306 ttagtcctttagttcaaaacagattaaaagtaggtccctgtttgttttaaaatcaaacaaagcacaatctattgtatttgaaactacactctcctatgcc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270259 ttagtcctttagttcaaaacagattaaaagtaggtccctgtttgttttaaaatcaaacaaagcacaatctattgtatttgaaactacactctcctatgcc 18270160  T
Q  406 gtctaaataaaggggatagggcttcagtcctattgttaaacaagataacaagggaaagctaaattaagacagactaaccttgctgcatagctctgttgca 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18270159 gtctaaataaaggggatagggcttcagtcctattgttaaacaagataacaagggaaagctaaattaagacagactaaccttgctgcatagctctgttgca 18270060  T
Q  506 gttttcttattctccacttcctcaactacttttatcgcttctagccaccatgattcactgtagttgtcttcaacagtgtcttcatattgcagaaaattgg 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18270059 gttttcttattctccacttcctcaactacttttatcgcttctagccaccatgaatcactgtagttgtcttcaacagtgtcttcatattgcagaaaattgg 18269960  T
Q  606 gcttgttatcattaggttgatgtcc 630  Q
    ||||||||||||| |||||||||||    
T  18269959 gcttgttatcattcggttgatgtcc 18269935  T

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