View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_31 (Length: 641)
Name: NF8901_low_31
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_31 |
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| [»] scaffold0427 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 46568640 - 46568997
Alignment:
| Q |
19 |
cttcatccttaatttactccaatgcacatgaactattttcagtgacattgaaatatcattcatcttataatttgccaatttacaagcacaagataatcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46568640 |
cttcatccttaatttactccaatgcacatgaactattttcagtgacattgaaatatcattcatcttataatttgccaatttacaagcacaagataatcaa |
46568739 |
T |
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| Q |
119 |
tgggttgtcctgattgagtaacaacacgtgatactttacttacacacctaccttgccaactctcatatttttctggaatgtattgtaaaccttgcctgga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46568740 |
tgggttgtcctgattgagtaacaacacgtgatactttacttacacacctaccttgccaactctaatatttttctggaatgtattgtaaaccttgcctgga |
46568839 |
T |
|
| Q |
219 |
ttatgtttttgctacacatgca-ggttgttactactattattatgacgtagtgaattggtattgccaatttgtaactttaacatggtattcaaagtttca |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46568840 |
ttatgtttttgctacacatgcatggttgttactactattattatgacgtagtgaattggtattgccaatttgtaactttaacatggtattcaaagtctca |
46568939 |
T |
|
| Q |
318 |
caacatctactacgttgaaacatcttttcagctttgaatgggaaaactcaaccctaat |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46568940 |
caacatctactacgttgaaacatcttttcagctttgaatgggaaaactcaaccctaat |
46568997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 376 - 629
Target Start/End: Original strand, 6868 - 7122
Alignment:
| Q |
376 |
ggctcagtctagggtgggagagtttgataggtctcccaccctgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccacc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6868 |
ggctcagtctagggtgggagagtttgataggtctcccaccgtgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccacc |
6967 |
T |
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| Q |
476 |
aacactttatacattccctttctctctcccctaactttctctcttcttgctgctgagttcctttcctg-ttcctgtgttttcttctaccattccccaact |
574 |
Q |
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| || |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6968 |
atcaatttatacattccctttctctctcccctagctttctctcttcttgctactgagttcctttcctgtttcctgtgttttcttctaccattccccaact |
7067 |
T |
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| Q |
575 |
acttttccaaatttatcccattcccgctttctttgatttatctttcaaccttctc |
629 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7068 |
acttttccaaatttatcccattctcgctttctttgatttatctttcaaccttctc |
7122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 8002 - 7910
Alignment:
| Q |
382 |
gtctagggtgggagagtttgataggtctcccaccctgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccac |
474 |
Q |
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||||||| |||| ||| |||||||||||||||| | | ||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| |
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| T |
8002 |
gtctaggatgggtgagcctgataggtctcccaccgtaggtgagtttgatgtacggttagattatgatgttccacaaatgttatgatgcaccac |
7910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 375 - 629
Target Start/End: Complemental strand, 4297100 - 4296848
Alignment:
| Q |
375 |
tggctcagtctagggtgggagagtttgataggtctcccaccctgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccac |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4297100 |
tggctcagtctagggtgggagagtttgataggtctcccaccgtgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccac |
4297001 |
T |
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| Q |
475 |
caacactttatacattccctttctctctcccctaactttctctcttcttgctgctgagttcctttcctg-ttcctgtgttttcttctaccattccccaac |
573 |
Q |
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|| || |||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
4297000 |
catcaatttatacattccctctctctctcccctagctttctc---tcttgctactgagttcctttcctgtttcttgtgttttcttctaccattccccaac |
4296904 |
T |
|
| Q |
574 |
tacttttccaaatttatcccattcccgctttctttgatttatctttcaaccttctc |
629 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4296903 |
tacttttccaaacttatcccattctcgctttctttgatttatctttcaaccttctc |
4296848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 474
Target Start/End: Original strand, 4295952 - 4296044
Alignment:
| Q |
382 |
gtctagggtgggagagtttgataggtctcccaccctgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccac |
474 |
Q |
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|||||||||||| ||| |||||||||||||||| | | ||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||| |
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| T |
4295952 |
gtctagggtgggtgagcctgataggtctcccaccgtaggtgagtttgatgtacggttagattatgatgttccacaaatgttatgatgcaccac |
4296044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 379 - 629
Target Start/End: Original strand, 3385248 - 3385500
Alignment:
| Q |
379 |
tcagtctagggtgggagagtttgataggtctcccaccctgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccaccaac |
478 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3385248 |
tcagtctagggtgggagagtttgataggtcttccaccatgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcaccaccatc |
3385347 |
T |
|
| Q |
479 |
actttatacattccctttctctct-cccctaactttctctcttcttgctgctgagttcctttcctg-ttcctgtgttttcttctaccattccccaactac |
576 |
Q |
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| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3385348 |
aatttatacattccctttctctctccccctagctttctctcttcttgctactgagttcctttcctgtttcctgtgttttcttctaccattccccaactac |
3385447 |
T |
|
| Q |
577 |
ttttccaaatttatcccattcccgctttctttgatttatctttcaaccttctc |
629 |
Q |
| |
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|||| ||||||||| ||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
3385448 |
ttttttaaatttatctcattctcgctttcttcgatttatctttcaaccttctc |
3385500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 450 - 519
Target Start/End: Complemental strand, 9738702 - 9738633
Alignment:
| Q |
450 |
ttccacaaatattatgatgcaccaccaacactttatacattccctttctctctcccctaactttctctct |
519 |
Q |
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||||||||||||||||||||||||||||||| |||||||| | ||| ||||| |||| |||||||||| |
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| T |
9738702 |
ttccacaaatattatgatgcaccaccaacaccttatacatgctttttttctctatcctacctttctctct |
9738633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 9033998 - 9034036
Alignment:
| Q |
376 |
ggctcagtctagggtgggagagtttgataggtctcccac |
414 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
9033998 |
ggctcagtctagggtgggagagcttgataggtctcccac |
9034036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 1173863 - 1173904
Alignment:
| Q |
384 |
ctagggtgggagagtttgataggtctcccaccctgagcaagt |
425 |
Q |
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| T |
1173863 |
ctagggtgggagagcttgataggtctcccaccgtgagcaagt |
1173904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 415
Target Start/End: Complemental strand, 18972349 - 18972310
Alignment:
| Q |
376 |
ggctcagtctagggtgggagagtttgataggtctcccacc |
415 |
Q |
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||||||||||||||||| |||| ||||||||||||||||| |
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| T |
18972349 |
ggctcagtctagggtggaagagcttgataggtctcccacc |
18972310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 6815255 - 6815299
Alignment:
| Q |
376 |
ggctcagtctagggtgggagagtttgataggtctcccaccctgag |
420 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| |||| |
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| T |
6815255 |
ggctcagtctagggtgggagaccttgataggtctcctaccgtgag |
6815299 |
T |
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Back To:
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