View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_33 (Length: 622)

Name: NF8901_low_33
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_33
NF8901_low_33
[»] chr5 (8 HSPs)
chr5 (28-612)||(24049420-24049999)
chr5 (28-612)||(24052556-24053142)
chr5 (61-336)||(24044665-24044930)
chr5 (279-336)||(24102209-24102266)
chr5 (20-56)||(19228749-19228785)
chr5 (534-574)||(24102163-24102203)
chr5 (169-251)||(24102320-24102403)
chr5 (81-113)||(24106907-24106939)
[»] chr6 (7 HSPs)
chr6 (336-463)||(4261295-4261422)
chr6 (169-235)||(4267934-4267998)
chr6 (190-251)||(4261051-4261110)
chr6 (20-57)||(23958823-23958860)
chr6 (396-456)||(4037883-4037943)
chr6 (97-140)||(4294758-4294801)
chr6 (409-465)||(4027546-4027602)
[»] chr8 (1 HSPs)
chr8 (22-59)||(35047090-35047127)


Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 28 - 612
Target Start/End: Complemental strand, 24049999 - 24049420
Alignment:
Q  28 ccttatcatatgtgtcaacaacaattttcttagatctaggactaaagtactttaagtgagaccgataaattcaagtctctctgctaccattataacaaaa 127  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24049999 ccttatcatatgtgtcaacaacaattttcttagatgtaggactaaagtactttaagtgagaccgataaattcaagtctctctgctaccattataacaaaa 24049900  T
Q  128 agctaatcaagatccatattgagggaattgtatgaatacatctgtttcaaattttctaacagtactttaaatttctttctgatgaccatttcaaacatca 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24049899 agctaatcaagatccatattgagggaattgtatgaatacatctgtttcaaattttctaacagtactttaaattt-tttctgatgaccatttcaaacatca 24049801  T
Q  228 atcaacattactttaaaatttccatgggnnnnnnnnngattaaattgatttaagttgggaaaatattatactcctaaccaatgaacatttaggcggtatc 327  Q
    ||||||||||||||||||||||||| ||         ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24049800 atcaacattactttaaaatttccat-ggaaaaaaaaagattaaattaatttaagttgggaaaatattatactcctaaccaatgaacatttaggcggtatc 24049702  T
Q  328 tgtggtttgcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaagagaaatgcatatgatcttttatgatctactcttat 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24049701 tgtggtttgcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatctactcttat 24049602  T
Q  428 tctaatcttgtttgatatttggtccaaggcatcaaagtttactagtaaagacaacaagaatggcctnnnnnnnnnnngaatatgattaaattaatttaag 527  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||           |||||||||||||||||||||||    
T  24049601 tctaatcttgtttgatatttggtccaaggcatcaaagtttttaagtaaagacaacaagaatggcct--aaaaaaaaagaatatgattaaattaatttaag 24049504  T
Q  528 ttaaaatggccttagaactgtgtatgtttattgctttgagatcaacatcagcatatcagcctaccatattacatgtgatgtccat 612  Q
    ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24049503 ttagaatggtcttagaa-tgtgtatgtttattgctttgagatcaacatcagcatatcagcctaccatattacacgtgatgtccat 24049420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 28 - 612
Target Start/End: Complemental strand, 24053142 - 24052556
Alignment:
Q  28 ccttatcatatgtgtcaacaacaattttcttagatctaggactaaagtactttaagtgagaccgataaattcaagtctctctgctaccattataacaaaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24053142 ccttatcatatgtgtcaacaacaattttcttagatctaggactaaagtactttaagtgagaccgataaattcaagtctctctgctaccattataacaaaa 24053043  T
Q  128 agctaatcaagatccatattgagggaattgtatgaatacatctgtttcaaattttctaacagtactttaaatttctttctgatgaccatttcaaacatca 227  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||    
T  24053042 agctaatcaagatccatattgagggaattgtatcaatacatctgtttcaaattttctaactttactttaaatttctttctgatgaccatttcaaacaaca 24052943  T
Q  228 atcaacattactttaaaatttccatgggnnnnnnnnngattaaattgatttaagttgggaaaatattatactcctaaccaatgaacatttaggcggtatc 327  Q
    |||||||||||||||||||||||||||          ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24052942 atcaacattactttaaaatttccatgg--aaaaaacagattaaattaatttaagttgggaaaatattatattcctaaccaatgaacatttaggcggtatc 24052845  T
Q  328 tgtg-------gtttgcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaagagaaatgcatatgatcttttatgatcta 420  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24052844 tgtggtttgccgtttgcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaatagaaatgcatatgatcttttatgatcta 24052745  T
Q  421 ctcttattctaatcttgtttgatatttggtccaaggcatcaaagtttactagtaaagacaacaagaatggcctnnnnnnnnnnngaatatgattaaatta 520  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||           ||||||||||||||||    
T  24052744 ctcttattctaatcttgtttgacatttggtccaaggcatcaaagtttttaagtaaagacaacaagaatggcct--aaaaaaaaagaatatgattaaatta 24052647  T
Q  521 atttaagttaaaatggccttagaactgtgtatgtttattgctttgagatcaacatcagcatatcagcctaccatattacatgtgatgtccat 612  Q
    |||||||||| ||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  24052646 atttaagttagaatggtcttagaa-tgtgtatgtttcttgctttgtgatcaacatcagcatatcagccaaccatattacacgtgatgtccat 24052556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 61 - 336
Target Start/End: Complemental strand, 24044930 - 24044665
Alignment:
Q  61 atctaggactaaagtactttaagtgagaccgataaattcaagtctctctgctaccattataacaaaaagctaat----caagatccatattgagggaatt 156  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||| || ||||||    
T  24044930 atctaggactaaagta-tttaagtgagactgataaattcaagtctctctgctaccattataacaaaaagctaattaatcaagatccatatcgatggaatt 24044832  T
Q  157 gtatgaatacatctgtttcaaattttctaacagtactttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatttccatgggn 256  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  24044831 gtatcaatacatctgtttcaaattttctaaaattactttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatt--------- 24044741  T
Q  257 nnnnnnnngattaaattgatttaagttgggaaaatattatactcctaaccaatgaacatttaggcggtatctgtggtttg 336  Q
            ||||||||| ||||||||||||||||||| ||| |||||| |||| |||||||  || ||||||||||||||    
T  24044740 ----aaaagattaaattaatttaagttgggaaaatataatattcctaatcaatcaacatttctgcagtatctgtggtttg 24044665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 24102266 - 24102209
Alignment:
Q  279 aagttgggaaaatattatactcctaaccaatgaacatttaggcggtatctgtggtttg 336  Q
    ||||| ||||||||||||| || ||| |||| |||||||  |||||||||||||||||    
T  24102266 aagttaggaaaatattatattcgtaatcaatcaacatttccgcggtatctgtggtttg 24102209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 19228749 - 19228785
Alignment:
Q  20 tgtctctgccttatcatatgtgtcaacaacaattttc 56  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  19228749 tgtctcagccttatcaaatgtgtcaacaacaattttc 19228785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 574
Target Start/End: Complemental strand, 24102203 - 24102163
Alignment:
Q  534 tggccttagaactgtgtatgtttattgctttgagatcaaca 574  Q
    ||||||||||||| ||||||||| |||||||||| ||||||    
T  24102203 tggccttagaactttgtatgtttcttgctttgagttcaaca 24102163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 24102403 - 24102320
Alignment:
Q  169 ctgtttcaaattttctaacagta---ctttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatttcca 251  Q
    |||||||||||||||||||| ||   ||| |||||||| ||| |||||||||||||| ||   | |||||||| ||||||||||||    
T  24102403 ctgtttcaaattttctaacaatattacttcaaatttctatctaatgaccatttcaaatat--ttaaacattacattaaaatttcca 24102320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 24106939 - 24106907
Alignment:
Q  81 aagtgagaccgataaattcaagtctctctgcta 113  Q
    ||||||||| |||||||||||||||||||||||    
T  24106939 aagtgagactgataaattcaagtctctctgcta 24106907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 336 - 463
Target Start/End: Original strand, 4261295 - 4261422
Alignment:
Q  336 gcatatcagaagtaaatgagaacggttgaatgagtcagtctatacaaactaccaaagagaaatgcatatgatcttttatgatctactcttattctaatct 435  Q
    ||||||||| ||||||||||||| ||||||||||||| |||  |||||  |||||| | ||| ||||||||||||||||||||||||||||||||| |||    
T  4261295 gcatatcagcagtaaatgagaacagttgaatgagtcaatctgcacaaatgaccaaataaaaaagcatatgatcttttatgatctactcttattctattct 4261394  T
Q  436 tgtttgatatttggtccaaggcatcaaa 463  Q
    | ||||  ||||||||||||||||||||    
T  4261395 tctttgtcatttggtccaaggcatcaaa 4261422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 4267934 - 4267998
Alignment:
Q  169 ctgtttcaaattttctaacagtactttaaatttctttctgatgaccatttcaaacatcaatcaacat 235  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||| |  ||||||||||||    
T  4267934 ctgtttcaaattttctaacattactttaaatttctgtctgatgaccatttcca--atcaatcaacat 4267998  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 4261051 - 4261110
Alignment:
Q  190 tactttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatttcca 251  Q
    |||||||||||||| |||||||||||||||||| |||  | |||||||||||||||||||||    
T  4261051 tactttaaatttctgtctgatgaccatttcaaatatc--taaacattactttaaaatttcca 4261110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 23958860 - 23958823
Alignment:
Q  20 tgtctctgccttatcatatgtgtcaacaacaattttct 57  Q
    |||||| |||||||||||||||||||||||||||||||    
T  23958860 tgtctcagccttatcatatgtgtcaacaacaattttct 23958823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 4037943 - 4037883
Alignment:
Q  396 aatgcatatgatcttttatgatctactcttattctaatcttgtttgatatttggtccaagg 456  Q
    |||||||||||||||||||||||||||| ||||||| | ||| ||| ||||| ||| ||||    
T  4037943 aatgcatatgatcttttatgatctactcatattctattattgcttgttattttgtcaaagg 4037883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 4294758 - 4294801
Alignment:
Q  97 ttcaagtctctctgctaccattataacaaaaagctaatcaagat 140  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||    
T  4294758 ttcaagtctctttgctgccattataacaaaaaactaatcaagat 4294801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 465
Target Start/End: Complemental strand, 4027602 - 4027546
Alignment:
Q  409 ttttatgatctactcttattctaatcttgtttgatatttggtccaaggcatcaaagt 465  Q
    |||||||| |||||||||||||| | |||| ||  |||| |||||||||||||||||    
T  4027602 ttttatgaactactcttattctatttttgtctgtcattttgtccaaggcatcaaagt 4027546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 35047127 - 35047090
Alignment:
Q  22 tctctgccttatcatatgtgtcaacaacaattttctta 59  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  35047127 tctcagccttctcatatgtgtcaacaacaattttctta 35047090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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