View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_35 (Length: 606)

Name: NF8901_low_35
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_35
NF8901_low_35
[»] chr7 (21 HSPs)
chr7 (18-596)||(20414349-20414927)
chr7 (18-596)||(20455978-20456550)
chr7 (18-122)||(35205949-35206050)
chr7 (18-120)||(21218733-21218832)
chr7 (426-489)||(7327758-7327821)
chr7 (18-75)||(21210506-21210563)
chr7 (154-206)||(21210637-21210689)
chr7 (18-119)||(7328125-7328223)
chr7 (421-472)||(22534240-22534291)
chr7 (30-122)||(7311247-7311336)
chr7 (421-475)||(22525575-22525629)
chr7 (516-568)||(13888574-13888626)
chr7 (426-469)||(26217543-26217586)
chr7 (505-567)||(21210918-21210980)
chr7 (327-361)||(22534321-22534355)
chr7 (327-369)||(24391081-24391123)
chr7 (326-375)||(7327860-7327909)
chr7 (432-469)||(24016362-24016399)
chr7 (327-367)||(22021058-22021098)
chr7 (327-367)||(22036776-22036816)
chr7 (426-470)||(26236438-26236482)
[»] chr4 (2 HSPs)
chr4 (417-482)||(2910617-2910682)
chr4 (431-475)||(11982094-11982138)
[»] scaffold0128 (1 HSPs)
scaffold0128 (424-472)||(8202-8250)
[»] scaffold0064 (1 HSPs)
scaffold0064 (433-475)||(23813-23855)
[»] chr1 (1 HSPs)
chr1 (327-369)||(39379425-39379467)


Alignment Details
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Complemental strand, 20414927 - 20414349
Alignment:
Q  18 caagacttgtcatctccaaatttcatcatcttccatataataaaatccgttccgttgatcatatcatgataaaaacaaaaggagttcatgaacacacaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20414927 caagacttgtcatctccaaatttcatcatcttccatataataaaatcggttccgttgatcatattatgataaaaacaaaaggagttcatgaacacacaaa 20414828  T
Q  118 cacttccatatgcacctgacatattctcacaactttgagggggcatcaaccgtgtgtatgtctcagtacttagatcaagcgaaacaatcatagttttaaa 217  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20414827 cacttccatctgcacctggcatattctcacaactttgagggggcatcaactgtgtgtatgtctcagtacttagatcaagcgaaacaatcatagttttaga 20414728  T
Q  218 aacacgattaggacaaaaagaggatgccaaccagttaacggtgcaactgaaatgtacaccatcatgcactctggaataagcggatattaattgatcaggc 317  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||  ||||    
T  20414727 aacacgattaggacaaaaacagggtgccaaccagttaatggtgctactgaaatgtacaccatcatgcactctggaataaggggatattaattgaaaaggc 20414628  T
Q  318 acaatatttaaacttttaatacttctccaaacattatcacccaaactaaaaatgctcatgttcacctcgggttttctgagaacatttctgagaacgtctt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20414627 acaatatttaaacttttaatacttctccaaacattatcacccaaactaaaaatgctcatgttcacctcgggttttctgagaacatttctgagaacgtctt 20414528  T
Q  418 cacaatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttccgcctataattgtcagcatgcaaatatcc 517  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  20414527 cacaatttaaggcaacgatcttataagtgttggttgaatcatcataaccaaacacaaacatccaagagttccgtctataattgtcagcatgcaaatatcc 20414428  T
Q  518 taatttatcagaaacttttctggtggccggattccaaaaacggagccacataactgcattatgattggcgagagaataa 596  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  20414427 taatttatcagaaatttttctggtggccgggttccaaaaacggagccacacaactgcattatcattggcgagagaataa 20414349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 596
Target Start/End: Complemental strand, 20456550 - 20455978
Alignment:
Q  18 caagacttgtcatctccaaatttcatcatcttccatataataaaatccgttccgttgatcatatcatgataaaaacaaaaggagttcatgaacacacaaa 117  Q
    |||||||||||||| ||||||||  ||||||||||||||| |||||  |||||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  20456550 caagacttgtcatccccaaattttgtcatcttccatataacaaaattggttccgttgatcgtgttatgataaaaacaaaaggagttcatcaacacacaaa 20456451  T
Q  118 cacttccatatgcacctgacatattctcacaactttgagggggcatcaaccgtgtgtatgtctcagtacttagatcaagcgaaacaatcatagttttaaa 217  Q
    ||||| ||||||||| |||||  |||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  20456450 cacttgcatatgcacatgacaccttctcacaacttggagggggcatcaactttgtgtatgtctcagtacctagatcaagggaaacaatcacagttttaaa 20456351  T
Q  218 aacacgattagga---caaaaagaggatgccaaccagttaacggtgcaactgaaatgtacaccatcatgcactctggaataagcggatattaattga--- 311  Q
    ||||| |||||||   || | |||||  ||| |||| ||||||||||||||||||||||||||| |||  || || ||||||  ||| || ||  ||       
T  20456350 aacacaattaggagtccatagagagggggccgaccaattaacggtgcaactgaaatgtacaccaccatagacacttgaataa--ggagataaagagaggg 20456253  T
Q  312 -tcaggcacaa-tatttaaacttttaatacttctccaaacattatcacccaaactaaaaatgctcatgttcacctcgggttttctgagaacatttctgag 409  Q
      |   ||||| || |||||| || |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| ||| ||||            
T  20456252 cgccaacacaattagttaaacattgaatacttctccaaacattatcacccaaactaaaaatgctcattttaacctcaggttttttgaaaaca-------- 20456161  T
Q  410 aacgtcttcacaatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttccgcctataattgtcagcatgc 509  Q
        ||||||||||| ||||||||||||||||| |||| |||||||| |||| ||| ||||||||| |||||||||||||| |||||||||||| |||||    
T  20456160 ----tcttcacaattcaaggccacaaccttatatgtgtcggttgaattatcaaaacaaaacacaaacatccaagagttccgtctataattgtcatcatgc 20456065  T
Q  510 aaatatcctaatttatcagaaacttttctggtggccggattccaaaaacggagccacataactgcattatgattggcgagagaataa 596  Q
    |||||||||||||||||||||| ||| |||||||| || ||||||||||| | ||||||||||||| |||||| |||||||||||||    
T  20456064 aaatatcctaatttatcagaaattttcctggtggcagggttccaaaaacgaaaccacataactgcactatgatcggcgagagaataa 20455978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 35205949 - 35206050
Alignment:
Q  18 caagacttgtcatctccaaatttcatcatcttccatataataaaatccgttccgttgatcatatcatgataaaaacaaaaggagttcatgaacacacaaa 117  Q
    ||||||||||||| ||||||||   ||||||||||||||| |||||| ||||| |||   | ||||||||||||||||||||||||| | | ||||||||    
T  35205949 caagacttgtcatttccaaattctgtcatcttccatataacaaaatcagttccattg---aaatcatgataaaaacaaaaggagttcctcagcacacaaa 35206045  T
Q  118 cactt 122  Q
     ||||    
T  35206046 tactt 35206050  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 21218733 - 21218832
Alignment:
Q  18 caagacttgtcatctccaaatttcatcatcttccatataataaaatccgttccgttgatcatatcatgataaaaacaaaaggagttcatgaacacacaaa 117  Q
    |||||||| ||||||||||||| | |||| | ||||||||  ||||| ||||| ||||    ||| ||||||||||||||||||||||| ||||||||||    
T  21218733 caagacttatcatctccaaattccgtcatttgccatataaccaaatcagttccattgaa---atcgtgataaaaacaaaaggagttcatcaacacacaaa 21218829  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 489
Target Start/End: Complemental strand, 7327821 - 7327758
Alignment:
Q  426 aaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaagagttcc 489  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||||||||  ||||||| ||||    
T  7327821 aaggctacaaccttataagtgttggttgaattatcataacaaaacacaaacctccaagaattcc 7327758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 21210506 - 21210563
Alignment:
Q  18 caagacttgtcatctccaaatttcatcatcttccatataataaaatccgttccgttga 75  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||| ||||||||||    
T  21210506 caagacttgtcatctccaaactttgtcatcttccatataacaaaatcagttccgttga 21210563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 21210637 - 21210689
Alignment:
Q  154 gagggggcatcaaccgtgtgtatgtctcagtacttagatcaagcgaaacaatc 206  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||| ||||    
T  21210637 gagggagcatcaaccgtgtgtatgtcacattacttagatcaagcgaaataatc 21210689  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 7328223 - 7328125
Alignment:
Q  18 caagacttgtcatctccaaatttcatcatcttccatataataaaatccgttccgttgatcatatcatgataaaaacaaaaggagttcatgaacacacaaa 117  Q
    |||||| |||||||||||||||   ||||||||||||||| |||||| |||   ||| | | ||||||| |||| || ||||||||||| ||||||||||    
T  7328223 caagacctgtcatctccaaattctgtcatcttccatataacaaaatctgtt---ttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaa 7328127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 472
Target Start/End: Complemental strand, 22534291 - 22534240
Alignment:
Q  421 aatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacac 472  Q
    |||||||||| ||||||||||| |||| |||||||| |||||||||||||||    
T  22534291 aatttaaggctacaaccttataggtgtcggttgaattatcataaccaaacac 22534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 7311247 - 7311336
Alignment:
Q  30 tctccaaatttcatcatcttccatataataaaatccgttccgttgatcatatcatgataaaaacaaaaggagttcatgaacacacaaacactt 122  Q
    ||||||||||   ||||||||||||||| |||||| |||||||||   | ||| ||| |||| || ||||||||||| |||||||||||||||    
T  7311247 tctccaaattctgtcatcttccatataacaaaatctgttccgttg---aaatcttgagaaaagcagaaggagttcatcaacacacaaacactt 7311336  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 475
Target Start/End: Original strand, 22525575 - 22525629
Alignment:
Q  421 aatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaa 475  Q
    |||||||||| ||||| ||||| |||| |||||||| ||||||||||||||||||    
T  22525575 aatttaaggctacaactttataggtgtcggttgaattatcataaccaaacacaaa 22525629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 568
Target Start/End: Original strand, 13888574 - 13888626
Alignment:
Q  516 cctaatttatcagaaacttttctggtggccggattccaaaaacggagccacat 568  Q
    |||||||||||||| | |||||||||||| |||||||| ||||||| ||||||    
T  13888574 cctaatttatcagatatttttctggtggcgggattccagaaacggaaccacat 13888626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 469
Target Start/End: Complemental strand, 26217586 - 26217543
Alignment:
Q  426 aaggccacaaccttataagtgttggttgaatcatcataaccaaa 469  Q
    |||||||||||||| ||||| || ||||||||||||||||||||    
T  26217586 aaggccacaaccttgtaagttttcgttgaatcatcataaccaaa 26217543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 567
Target Start/End: Original strand, 21210918 - 21210980
Alignment:
Q  505 catgcaaatatcctaatttatcagaaacttttctggtggccggattccaaaaacggagccaca 567  Q
    |||||||||| |||||||||||||| |  ||||||||||| || ||||| ||| |||||||||    
T  21210918 catgcaaataccctaatttatcagatatatttctggtggcggggttccagaaatggagccaca 21210980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 22534355 - 22534321
Alignment:
Q  327 aaacttttaatacttctccaaacattatcacccaa 361  Q
    |||||||||||| ||||||||||||||||||||||    
T  22534355 aaacttttaatagttctccaaacattatcacccaa 22534321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 24391123 - 24391081
Alignment:
Q  327 aaacttttaatacttctccaaacattatcacccaaactaaaaa 369  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||    
T  24391123 aaactttgaatatttctccaaatattatcacccaaactaaaaa 24391081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 7327909 - 7327860
Alignment:
Q  326 taaacttttaatacttctccaaacattatcacccaaactaaaaatgctca 375  Q
    |||| ||| |||| || |||||||||||||||||||| ||||||||||||    
T  7327909 taaagtttgaatagttttccaaacattatcacccaaagtaaaaatgctca 7327860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 469
Target Start/End: Complemental strand, 24016399 - 24016362
Alignment:
Q  432 acaaccttataagtgttggttgaatcatcataaccaaa 469  Q
    |||||||||||||| || ||||||||||||||||||||    
T  24016399 acaaccttataagttttcgttgaatcatcataaccaaa 24016362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 22021098 - 22021058
Alignment:
Q  327 aaacttttaatacttctccaaacattatcacccaaactaaa 367  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  22021098 aaactttcaatatttctccaaacattatcgcccaaactaaa 22021058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 22036816 - 22036776
Alignment:
Q  327 aaacttttaatacttctccaaacattatcacccaaactaaa 367  Q
    ||||||| |||| |||||||||||||||| |||||||||||    
T  22036816 aaactttcaatatttctccaaacattatcgcccaaactaaa 22036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 26236482 - 26236438
Alignment:
Q  426 aaggccacaaccttataagtgttggttgaatcatcataaccaaac 470  Q
    ||||| |||||||| ||||| || |||||||||||||||||||||    
T  26236482 aaggctacaaccttgtaagtttttgttgaatcatcataaccaaac 26236438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 482
Target Start/End: Complemental strand, 2910682 - 2910617
Alignment:
Q  417 tcacaatttaaggccacaaccttataagtgttggttgaatcatcataaccaaacacaaaaatccaa 482  Q
    |||||||  ||||||||||||||||||||||  ||||||| ||||||||||||||| ||| |||||    
T  2910682 tcacaatccaaggccacaaccttataagtgtgagttgaattatcataaccaaacaccaaattccaa 2910617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 11982094 - 11982138
Alignment:
Q  431 cacaaccttataagtgttggttgaatcatcataaccaaacacaaa 475  Q
    ||||||||||||||||| | |||||| | ||||||||||||||||    
T  11982094 cacaaccttataagtgtcgcttgaattaacataaccaaacacaaa 11982138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 8250 - 8202
Alignment:
Q  424 ttaaggccacaaccttataagtgttggttgaatcatcataaccaaacac 472  Q
    ||||||||||||| |||||||||| |||||||  |||||||||||||||    
T  8250 ttaaggccacaactttataagtgtcggttgaactatcataaccaaacac 8202  T

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Target: scaffold0064 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 475
Target Start/End: Complemental strand, 23855 - 23813
Alignment:
Q  433 caaccttataagtgttggttgaatcatcataaccaaacacaaa 475  Q
    |||||||||||||||||||| |||  |||||||||||||||||    
T  23855 caaccttataagtgttggttaaattctcataaccaaacacaaa 23813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 39379425 - 39379467
Alignment:
Q  327 aaacttttaatacttctccaaacattatcacccaaactaaaaa 369  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||    
T  39379425 aaactttcaatatttctccaaacattatcacccaaactgaaaa 39379467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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