View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_38 (Length: 599)
Name: NF8901_low_38
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Complemental strand, 3094352 - 3093763
Alignment:
| Q |
1 |
ccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094352 |
ccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattga |
3094253 |
T |
|
| Q |
101 |
agtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094252 |
agtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcc |
3094153 |
T |
|
| Q |
201 |
tttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094152 |
tttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcat |
3094053 |
T |
|
| Q |
301 |
ttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094052 |
ttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctc |
3093953 |
T |
|
| Q |
401 |
catcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagcaaatt |
500 |
Q |
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| T |
3093952 |
catcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagcaaatt |
3093853 |
T |
|
| Q |
501 |
aaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatgttgacaatctgatgtccat |
590 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3093852 |
aaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatgttgacaatctgatgaccat |
3093763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 3085506 - 3084999
Alignment:
| Q |
1 |
ccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacattga |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085506 |
ccttataatcattatcaacaaccctaccaacttgacaaccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacattga |
3085407 |
T |
|
| Q |
101 |
agtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatgcc |
200 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||| |||||| |||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||| || |
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| T |
3085406 |
agtatttgtgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaagca |
3085307 |
T |
|
| Q |
201 |
tttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctcat |
300 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
3085306 |
tttgaatctattattttctcaattgtgcccatgccttgtatgcatcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatcat |
3085207 |
T |
|
| Q |
301 |
ttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctctc |
400 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||| || | | ||| || ||||||||||||||||| || ||||||||||| ||||| || |
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| T |
3085206 |
ttggatcagtgtttcggagctccaaatgacctgttgaaattggacctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctttc |
3085107 |
T |
|
| Q |
401 |
catcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagcaaatt |
500 |
Q |
| |
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|||||| ||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3085106 |
tatcctccctattgcttttgctatggcttgtagaatcatttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagtaaatt |
3085007 |
T |
|
| Q |
501 |
aaaaataa |
508 |
Q |
| |
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|||||||| |
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| T |
3085006 |
aaaaataa |
3084999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
39 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
88 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
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|
| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
17 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
61 |
Q |
| |
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||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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