View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_4 (Length: 916)

Name: NF8901_low_4
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_4
NF8901_low_4
[»] chr5 (16 HSPs)
chr5 (17-905)||(35138245-35139139)
chr5 (714-823)||(117417-117526)
chr5 (272-376)||(32811947-32812052)
chr5 (269-364)||(19629462-19629558)
chr5 (858-902)||(34250412-34250456)
chr5 (290-365)||(32811088-32811163)
chr5 (241-379)||(21134452-21134589)
chr5 (836-902)||(36639917-36639983)
chr5 (748-821)||(34121522-34121594)
chr5 (752-824)||(4306566-4306638)
chr5 (159-198)||(9724220-9724259)
chr5 (858-904)||(10898700-10898747)
chr5 (858-900)||(14299723-14299765)
chr5 (756-822)||(37877114-37877180)
chr5 (783-824)||(8591535-8591576)
chr5 (89-126)||(32810900-32810937)
[»] chr1 (19 HSPs)
chr1 (278-403)||(46631260-46631385)
chr1 (750-895)||(48548971-48549110)
chr1 (754-824)||(1233359-1233429)
chr1 (276-416)||(15504712-15504853)
chr1 (311-400)||(31135636-31135725)
chr1 (863-902)||(6021784-6021823)
chr1 (835-902)||(37522948-37523015)
chr1 (748-823)||(52339683-52339758)
chr1 (747-809)||(35961437-35961499)
chr1 (330-403)||(38474798-38474871)
chr1 (858-902)||(10324999-10325043)
chr1 (157-197)||(16295808-16295848)
chr1 (311-362)||(462151-462201)
chr1 (92-126)||(5086080-5086114)
chr1 (284-346)||(5178956-5179017)
chr1 (747-809)||(34915135-34915197)
chr1 (713-790)||(3515895-3515972)
chr1 (849-902)||(9939780-9939833)
chr1 (783-820)||(30557560-30557597)
[»] chr7 (16 HSPs)
chr7 (737-887)||(38123610-38123756)
chr7 (749-824)||(40561714-40561789)
chr7 (713-820)||(40491636-40491743)
chr7 (737-902)||(27571842-27572003)
chr7 (737-808)||(45557435-45557506)
chr7 (747-821)||(9183869-9183943)
chr7 (311-360)||(47451440-47451489)
chr7 (740-808)||(25156270-25156338)
chr7 (858-902)||(45005000-45005044)
chr7 (312-355)||(19370562-19370605)
chr7 (867-902)||(36270960-36270995)
chr7 (737-823)||(33853428-33853514)
chr7 (864-902)||(35105138-35105176)
chr7 (758-824)||(41788370-41788436)
chr7 (717-790)||(42481814-42481887)
chr7 (748-821)||(44570695-44570768)
[»] chr2 (24 HSPs)
chr2 (278-403)||(42510706-42510831)
chr2 (270-365)||(2419931-2420026)
chr2 (737-823)||(4894101-4894187)
chr2 (737-824)||(1976808-1976895)
chr2 (285-399)||(8951318-8951432)
chr2 (268-365)||(33643684-33643782)
chr2 (857-902)||(10619001-10619046)
chr2 (749-818)||(15220817-15220886)
chr2 (747-820)||(16518836-16518909)
chr2 (713-809)||(680211-680306)
chr2 (860-902)||(37420260-37420302)
chr2 (327-377)||(41513823-41513873)
chr2 (767-820)||(9605244-9605297)
chr2 (770-822)||(11511009-11511061)
chr2 (864-899)||(680344-680379)
chr2 (747-794)||(14532772-14532819)
chr2 (729-824)||(44439308-44439403)
chr2 (868-902)||(22535978-22536012)
chr2 (864-902)||(31453363-31453401)
chr2 (747-821)||(40401597-40401671)
chr2 (858-901)||(42982523-42982568)
chr2 (737-822)||(16519500-16519585)
chr2 (861-902)||(33019220-33019261)
chr2 (756-821)||(37287832-37287897)
[»] chr6 (19 HSPs)
chr6 (739-902)||(34620866-34621025)
chr6 (739-902)||(34748303-34748462)
chr6 (748-901)||(882667-882816)
chr6 (835-904)||(852510-852579)
chr6 (713-823)||(9505825-9505935)
chr6 (326-403)||(28774090-28774165)
chr6 (757-820)||(8856365-8856428)
chr6 (797-902)||(1485150-1485251)
chr6 (714-780)||(7953081-7953147)
chr6 (861-902)||(26280585-26280626)
chr6 (311-380)||(33493529-33493598)
chr6 (751-819)||(32888915-32888983)
chr6 (863-902)||(5724696-5724735)
chr6 (749-824)||(24982347-24982422)
chr6 (757-824)||(31305811-31305878)
chr6 (746-824)||(1349362-1349439)
chr6 (837-887)||(34063307-34063357)
chr6 (89-122)||(31596936-31596969)
chr6 (157-198)||(34428151-34428192)
[»] scaffold0361 (1 HSPs)
scaffold0361 (737-824)||(14058-14145)
[»] chr8 (11 HSPs)
chr8 (713-820)||(32927950-32928057)
chr8 (256-416)||(11567565-11567723)
chr8 (737-820)||(16972008-16972091)
chr8 (737-819)||(8700895-8700977)
chr8 (864-902)||(35495240-35495278)
chr8 (751-824)||(4950537-4950610)
chr8 (737-814)||(42458275-42458352)
chr8 (748-824)||(32767441-32767519)
chr8 (754-824)||(37158638-37158709)
chr8 (749-819)||(4554565-4554635)
chr8 (770-823)||(35495315-35495368)
[»] chr3 (15 HSPs)
chr3 (717-904)||(37334958-37335141)
chr3 (849-902)||(7717373-7717426)
chr3 (858-902)||(35058341-35058385)
chr3 (737-824)||(3776576-3776663)
chr3 (859-902)||(5406886-5406929)
chr3 (714-792)||(1441328-1441406)
chr3 (783-824)||(190880-190921)
chr3 (861-902)||(41115426-41115467)
chr3 (835-903)||(25359612-25359680)
chr3 (288-376)||(44240614-44240702)
chr3 (756-824)||(46853497-46853565)
chr3 (737-824)||(35253411-35253498)
chr3 (713-768)||(44958562-44958617)
chr3 (754-819)||(7262873-7262938)
chr3 (763-824)||(27266764-27266825)
[»] chr4 (12 HSPs)
chr4 (748-902)||(55927725-55927875)
chr4 (302-376)||(42781213-42781287)
chr4 (835-902)||(32818408-32818475)
chr4 (737-824)||(33843765-33843852)
chr4 (861-902)||(29779118-29779159)
chr4 (326-365)||(22900372-22900411)
chr4 (326-365)||(22952040-22952079)
chr4 (748-819)||(47144273-47144344)
chr4 (157-202)||(14013902-14013947)
chr4 (314-347)||(24277332-24277365)
chr4 (861-902)||(26617448-26617489)
chr4 (770-819)||(41058980-41059029)
[»] scaffold0019 (1 HSPs)
scaffold0019 (324-403)||(41311-41390)
[»] scaffold0187 (2 HSPs)
scaffold0187 (311-365)||(7495-7549)
scaffold0187 (311-365)||(17823-17877)


Alignment Details
Target: chr5 (Bit Score: 780; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 780; E-Value: 0
Query Start/End: Original strand, 17 - 905
Target Start/End: Original strand, 35138245 - 35139139
Alignment:
Q  17 atcaaaaggtaagtcagcatttcagtccttaaaattgtcagggtcaactcattttaaaaaatgtaggggtcgagcaatttaatccctcaaatttacaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35138245 atcaaaaggtaagtcagcatttcagtccttaaaattgtcagggtcaactcattttaaaaaatgtaggggtcgagcaatttaatccctcaaatttacaaaa 35138344  T
Q  117 tagcaaattactagcagttcttcaaattaaaaaactctgctcaatttagtccctccatcaaaatatctatttaataaacatccatctaaatcagtaattg 216  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |    
T  35138345 tagcaaattactagcagttcttcaaattaaaaaactccgttcaatttagtccctccatcaaaatatctatttaataaacatccatctaaatcaataaacg 35138444  T
Q  217 acctatatattgatcgatttcaataacagcctcttgcttcatcaggagaagcataaaacctttaaaatgtggtgctaaatttgataaaatgacgaaattg 316  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35138445 acctatatattgattgatttcaataacagtctcttgcttcatcaggagaagcataaaacctttaaaatgtggtgcaaaatttgataaaatgacgaaattg 35138544  T
Q  317 actaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggactacattgttgattta 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35138545 actaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggactacattgttgattta 35138644  T
Q  417 ctaaaaaatcgacatatctccaaaaacaatgagctaaaatgagctcacctgagatgtagctgtaccgacaagtgatggcgccaagcctccatacaacctc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35138645 ctaaaaaatcgacatatctccaaaaacaatgagctaaaatgagctcacctgagatgtagctgtaccgacaagtgatggcgccaagcctccatacaacctc 35138744  T
Q  517 tcccatccctcttgtttcacaacctacaatgcattcgcataaccgcaatctctaaacaactaatcccaatataacaaacataaaataaaaaattaccaac 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35138745 tcccatccctcttgtttcacaacctacaatgcattcgcataaccgcaatctctaaacaactaatcccaatataacaaacataaaataaaaaattaccaac 35138844  T
Q  617 tttcattcagtcccaaaaaccattatcaagtttccatttttc--tgtgtttttgtctccactttgggaggagccaaaatcgattctacatgtgcagaatt 714  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35138845 tttcattcagtcccaaaaaccattatcaagtttccatttttctgtgtgtttttgtctccacttttggaggagccaaaatcgattctacatgtgcagaatt 35138944  T
Q  715 tgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaata 814  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35138945 tgagtgaattgattatgtaaacttgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaata 35139044  T
Q  815 aatttgagtgg----nnnnnnnnntcaattctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaattttg 905  Q
    |||||||||||             ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  35139045 aatttgagtggaaaaaaaaaaaaatcaattctaggataagaacctatgatttctagcttcaagtaaaatcaattctagaggcaaaatcaattttg 35139139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 714 - 823
Target Start/End: Original strand, 117417 - 117526
Alignment:
Q  714 ttgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaat 813  Q
    |||||||||||||| ||||||  ||||||||| ||| || ||||||||||||||||||||  |||||  |||||||  || | |||||||||| ||||||    
T  117417 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagttaaacaat 117516  T
Q  814 aaatttgagt 823  Q
    | ||||||||    
T  117517 acatttgagt 117526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 32811947 - 32812052
Alignment:
Q  272 aaacctttaaaat-gtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatac 370  Q
    ||||||||||||| ||| |||||||||||  ||| | ||  |||||||||||||||||||||||||| ||||||||||||| |||  |||||||| || |    
T  32811947 aaacctttaaaattgtgatgctaaatttggaaaattaacataattgactaacattgttcaatttaagagactaaattgctacttcataaatttgacatcc 32812046  T
Q  371 taaatt 376  Q
    ||||||    
T  32812047 taaatt 32812052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 364
Target Start/End: Complemental strand, 19629558 - 19629462
Alignment:
Q  269 ataaaaccttta-aaatgtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttg 364  Q
    |||||||||| | |||||||| ||||| ||||  ||||||||||||||| || |  || || | ||||||||||||||||||||||||||| |||||    
T  19629558 ataaaaccttcagaaatgtggcgctaagtttggaaaaatgacgaaattggctgatgtttttaagtttaagggactaaattgctatttcgcagatttg 19629462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 858 - 902
Target Start/End: Original strand, 34250412 - 34250456
Alignment:
Q  858 aatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||    
T  34250412 aatttctagcatcaagtagaatcaattctagaggcataatcaatt 34250456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 32811088 - 32811163
Alignment:
Q  290 gctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttga 365  Q
    ||||||||||  ||||| ||  |||| ||| || |||||||||||||||||||||||| |||||| ||||||||||    
T  32811088 gctaaatttggaaaaataacataattaactgacgttgttcaatttaagggactaaatttctattttgcaaatttga 32811163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 241 - 379
Target Start/End: Original strand, 21134452 - 21134589
Alignment:
Q  241 aacagcctcttgcttcatcaggagaagcataaaacctttaaaat-gtggtgctaaatttgataaaatgacgaaattgactaacattgttcaa-tttaagg 338  Q
    ||||| |||||| | ||||| ||||| |||| ||| |||||||| |||||||||||||||  |||| ||| | ||||| | |   ||||||| |||||||    
T  21134452 aacagtctcttggtgcatcaagagaaacatagaacttttaaaattgtggtgctaaatttggaaaaaggaccacattgaatga---tgttcaaatttaagg 21134548  T
Q  339 gactaaattgctatttcgcaaatttgaaatactaaattgac 379  Q
    |||||  ||||||||| ||| ||||||| ||||||||||||    
T  21134549 gactaggttgctatttagcatatttgaattactaaattgac 21134589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 836 - 902
Target Start/End: Complemental strand, 36639983 - 36639917
Alignment:
Q  836 caattctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||||||| || |||| ||| |||||| |||||||||||||||| ||| | |||||||||||||||    
T  36639983 caattctagaattagaagctacaatttccagcttcaagtagaatctattttggaggcaaaatcaatt 36639917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 748 - 821
Target Start/End: Original strand, 34121522 - 34121594
Alignment:
Q  748 taaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttga 821  Q
    ||||||||| ||||| |||||||||| |||||| |||||||||||| | ||| |||| | ||||||||||||||    
T  34121522 taaaattgaattgaatgtaaaatgatatatgtttagatacattcat-ttaaaatgaggtcaacaataaatttga 34121594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 752 - 824
Target Start/End: Complemental strand, 4306638 - 4306566
Alignment:
Q  752 attgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||||| |||||||||| ||||||  ||||||||||| | |||  || ||||||||||||||| ||||    
T  4306638 attgagttgaatgtaaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtg 4306566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 9724259 - 9724220
Alignment:
Q  159 aatttagtccctccatcaaaatatctatttaataaacatc 198  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  9724259 aatttaatccctccatcaaaatatctatttaatgaacatc 9724220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 858 - 904
Target Start/End: Complemental strand, 10898747 - 10898700
Alignment:
Q  858 aatttctagcttcaagt-agaatcaattctagaggcaaaatcaatttt 904  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||    
T  10898747 aatttcttacttcaagttagaatcaattctagaggcaaaatcaatttt 10898700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 858 - 900
Target Start/End: Complemental strand, 14299765 - 14299723
Alignment:
Q  858 aatttctagcttcaagtagaatcaattctagaggcaaaatcaa 900  Q
    ||||||||||||||| || ||||||||||| ||||||||||||    
T  14299765 aatttctagcttcaactaaaatcaattctataggcaaaatcaa 14299723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 822
Target Start/End: Complemental strand, 37877180 - 37877114
Alignment:
Q  756 agttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgag 822  Q
    ||||||||||| | || | ||||||  ||| ||||||||| |||||||||| |||||||||||||||    
T  37877180 agttgaaggtagagtggtttatgtttggattcattcatataaaagtgagttaaacaataaatttgag 37877114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 824
Target Start/End: Complemental strand, 8591576 - 8591535
Alignment:
Q  783 gatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||| ||| |||||||||||||||| |||||||||||    
T  8591576 gatacattcctataaaagtgagttgaacaacaaatttgagtg 8591535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 32810900 - 32810937
Alignment:
Q  89 agcaatttaatccctcaaatttacaaaatagcaaatta 126  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  32810900 agcaatttagtccctcaaatttacgaaatagcaaatta 32810937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 278 - 403
Target Start/End: Complemental strand, 46631385 - 46631260
Alignment:
Q  278 ttaaaatgtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattg 377  Q
    ||||| ||||| | ||||||||  ||||  ||||||||  || |||||||||| |||||||||||||| | ||| ||||||||||||||| | |||||||    
T  46631385 ttaaattgtggcgataaatttggaaaaacaacgaaattatctgacattgttcactttaagggactaaaatactaattcgcaaatttgaaagattaaattg 46631286  T
Q  378 accgatccttaaaatttcaaggacta 403  Q
    ||||| ||||||||||||||||||||    
T  46631285 accgacccttaaaatttcaaggacta 46631260  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 750 - 895
Target Start/End: Original strand, 48548971 - 48549110
Alignment:
Q  750 aaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggnnnnnnnnntcaattctaggataa 849  Q
    |||||||||||||||||||||||| ||||||  |||||||| || | ||||||||||||||||||||  |||||           |||||||||| || |    
T  48548971 aaattgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaacaataaa--tgagt----ttaaaaatcaattctagaatca 48549064  T
Q  850 gaacctataatttctagcttcaagtagaatcaattctagaggcaaa 895  Q
    ||| ||| ||||||||||||||||||||||||||| | ||||||||    
T  48549065 gaagctacaatttctagcttcaagtagaatcaattttggaggcaaa 48549110  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 754 - 824
Target Start/End: Complemental strand, 1233429 - 1233359
Alignment:
Q  754 tgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    |||||| |||||||||| || |||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  1233429 tgagtttaaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaatttgagtg 1233359  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 276 - 416
Target Start/End: Original strand, 15504712 - 15504853
Alignment:
Q  276 ctttaaaat-gtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaa 374  Q
    ||||||||| |||||||||||||||| || ||||| |||||||||||  |  |  ||||||||||||||||||||||||||  |||||| ||  ||||||    
T  15504712 ctttaaaattgtggtgctaaatttgaaaatatgactaaattgactaagctattcaaatttaagggactaaattgctatttcttaaatttaaatgactaaa 15504811  T
Q  375 ttgaccgatccttaaaatttcaaggactacattgttgattta 416  Q
    |||||| | | ||| ||||| ||||||||   ||||||||||    
T  15504812 ttgaccaacctttacaatttgaaggactaatatgttgattta 15504853  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 31135636 - 31135725
Alignment:
Q  311 aaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaagga 400  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |  ||||| | | ||| ||| |||||| ||||| |||||||||||    
T  31135636 aaattgactcacattgttcaatttaaaggactaaattgctattttgtgaatttaagagacttaatggaccgacccttacaatttcaagga 31135725  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 863 - 902
Target Start/End: Complemental strand, 6021823 - 6021784
Alignment:
Q  863 ctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  6021823 ctagcttcaagtagaatcgattctagaggcaaaatcaatt 6021784  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 835 - 902
Target Start/End: Original strand, 37522948 - 37523015
Alignment:
Q  835 tcaattctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||||||||||||| || ||  || ||||||||||||||||||||||||| ||||  ||||||||||    
T  37522948 tcaattctaggataaaaaactccaacttctagcttcaagtagaatcaattcgagagaaaaaatcaatt 37523015  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 748 - 823
Target Start/End: Original strand, 52339683 - 52339758
Alignment:
Q  748 taaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagt 823  Q
    ||||||||||||||||||||||| || ||| || | |||||||| | | || |||| |||||||||||||||||||    
T  52339683 taaaattgagttgaaggtaaaattatttatatttatatacattcgtgtaaatgtgacttgaacaataaatttgagt 52339758  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 747 - 809
Target Start/End: Complemental strand, 35961499 - 35961437
Alignment:
Q  747 ctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaa 809  Q
    |||||| |||||||||||||||||||| ||||||   |||||||||| | |||||||||||||    
T  35961499 ctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 38474798 - 38474871
Alignment:
Q  330 aatttaagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggacta 403  Q
    |||||||||||||||||||||||||| ||||||| |   ||||||||||||   | ||| ||||||||||||||    
T  38474798 aatttaagggactaaattgctatttctcaaattttagggactaaattgaccacccgttacaatttcaaggacta 38474871  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 858 - 902
Target Start/End: Original strand, 10324999 - 10325043
Alignment:
Q  858 aatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||    
T  10324999 aatttctatcttcaagtagactcaattctagaggcaaaattaatt 10325043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 16295848 - 16295808
Alignment:
Q  157 tcaatttagtccctccatcaaaatatctatttaataaacat 197  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  16295848 tcaatttagtccctcaatcaaaatatcaatttaataaacat 16295808  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 462151 - 462201
Alignment:
Q  311 aaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatt 362  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||| |||||||    
T  462151 aaattgactaatatt-ttcaatttaagggactaaattgccattttgcaaatt 462201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 5086114 - 5086080
Alignment:
Q  92 aatttaatccctcaaatttacaaaatagcaaatta 126  Q
    |||||| ||||||||||||||||||||||||||||    
T  5086114 aatttagtccctcaaatttacaaaatagcaaatta 5086080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 5178956 - 5179017
Alignment:
Q  284 tgtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaat 346  Q
    |||| |||||||||||| |||||||| ||||||||  ||||||||||  ||||||||||||||    
T  5178956 tgtgatgctaaatttga-aaaatgactaaattgacggacattgttcacgttaagggactaaat 5179017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 747 - 809
Target Start/End: Complemental strand, 34915197 - 34915135
Alignment:
Q  747 ctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaa 809  Q
    |||||| ||||||| |||||||||||| ||||||   |||||||||| | |||||||||||||    
T  34915197 ctaaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaa 34915135  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 713 - 790
Target Start/End: Complemental strand, 3515972 - 3515895
Alignment:
Q  713 tttgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacatt 790  Q
    ||||||||||||||| ||||||  |||||||||   ||||||||||||||||| || |||| | ||||  ||||||||    
T  3515972 tttgagtgaattgattatgtaaaattgattctggtgaaaattgagttgaaggtgaagtgatttgtgtttggatacatt 3515895  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 849 - 902
Target Start/End: Original strand, 9939780 - 9939833
Alignment:
Q  849 agaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||| ||| ||||| ||||||  ||||||||||||||||| |||||||||||||    
T  9939780 agaagctacaatttttagcttatagtagaatcaattctaggggcaaaatcaatt 9939833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 820
Target Start/End: Complemental strand, 30557597 - 30557560
Alignment:
Q  783 gatacattcatatgaaagtgagttgaacaataaatttg 820  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  30557597 gatacattcatataaaagtgagttgaactataaatttg 30557560  T

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Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 737 - 887
Target Start/End: Original strand, 38123610 - 38123756
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggnnnnnnnnntc 836  Q
    |||||| || |||||||||||||||||||||| | || | ||||| || |||||||| | |||||||||||| |||||||||||||||          ||    
T  38123610 ttgattatgactaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtg----taaaaatc 38123705  T
Q  837 aattctaggataagaacctataatttctagcttcaagtagaatcaattcta 887  Q
    |||||||| || |||| ||| ||||||||||||||||||||||||||||||    
T  38123706 aattctagaattagaagctacaatttctagcttcaagtagaatcaattcta 38123756  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 749 - 824
Target Start/End: Original strand, 40561714 - 40561789
Alignment:
Q  749 aaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    |||||||||||||| ||||| |||| ||||||  ||||||||||| | |||||||||||||||||| |||||||||    
T  40561714 aaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagtg 40561789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 713 - 820
Target Start/End: Complemental strand, 40491743 - 40491636
Alignment:
Q  713 tttgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaa 812  Q
    |||||||||||||||  |||||  |||||| || |||||| ||||||||||||||| |||| ||| ||  ||||||||||| | |||||||||| |||      
T  40491743 tttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactt 40491644  T
Q  813 taaatttg 820  Q
    ||||||||    
T  40491643 taaatttg 40491636  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 737 - 902
Target Start/End: Complemental strand, 27572003 - 27571842
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggnnnnnnnnntc 836  Q
    |||||| || |||||| |||||| ||||||||||||| |||| |  |||||||| || | || |||||||||| |||||| |||||||          ||    
T  27572003 ttgattatggctaaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaataataaacttgagtg----ttaaaatc 27571908  T
Q  837 aattctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||| || | || ||  |||||||| |||||||||||||||||||| |||| ||||||||||    
T  27571907 aattctagaatcaaaagctccaatttctaacttcaagtagaatcaattcttgaggtaaaatcaatt 27571842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 737 - 808
Target Start/End: Complemental strand, 45557506 - 45557435
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttga 808  Q
    ||||||||| |||||| ||||||||||||||| |||| | ||||  ||||||||||| | ||||||||||||    
T  45557506 ttgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttga 45557435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 747 - 821
Target Start/End: Original strand, 9183869 - 9183943
Alignment:
Q  747 ctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttga 821  Q
    |||||||||||||||||||||||| || |||||| | |||||||| | | |  |||| |||||||||||||||||    
T  9183869 ctaaaattgagttgaaggtaaaattatttatgtttatatacattcgtgtaagtgtgacttgaacaataaatttga 9183943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 47451440 - 47451489
Alignment:
Q  311 aaattgactaacattgttcaatttaagggactaaattgctatttcgcaaa 360  Q
    |||||| | |||||||||||||||||| ||||||||||||||||| ||||    
T  47451440 aaattggccaacattgttcaatttaagagactaaattgctatttcacaaa 47451489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 808
Target Start/End: Complemental strand, 25156338 - 25156270
Alignment:
Q  740 attctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttga 808  Q
    |||||| |||||| |||||||||| ||||||||| | ||||   |||||||||||| ||||||||||||    
T  25156338 attctgactaaaaatgagttgaagataaaatgatttgtgtttgaatacattcatataaaagtgagttga 25156270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 858 - 902
Target Start/End: Complemental strand, 45005044 - 45005000
Alignment:
Q  858 aatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||    
T  45005044 aatttttagcttcaagtagaatcaattctgaaggcaaaatcaatt 45005000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 19370605 - 19370562
Alignment:
Q  312 aattgactaacattgttcaatttaagggactaaattgctatttc 355  Q
    |||||| | |||||||||||||||||||| ||||||||||||||    
T  19370605 aattgagtcacattgttcaatttaagggagtaaattgctatttc 19370562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 867 - 902
Target Start/End: Complemental strand, 36270995 - 36270960
Alignment:
Q  867 cttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||||||||||| ||||||||||||||||||||||    
T  36270995 cttcaagtagaataaattctagaggcaaaatcaatt 36270960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 737 - 823
Target Start/End: Original strand, 33853428 - 33853514
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagt 823  Q
    ||||||||| |||| | |||||||||| |||| |||| ||||||  ||||||||||| | ||||  || || |||||||||||||||    
T  33853428 ttgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaaagcaagctggacaataaatttgagt 33853514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 864 - 902
Target Start/End: Complemental strand, 35105176 - 35105138
Alignment:
Q  864 tagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  35105176 tagcttcaagtagaatcaattctacaagcaaaatcaatt 35105138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 758 - 824
Target Start/End: Complemental strand, 41788436 - 41788370
Alignment:
Q  758 ttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||||| |||| ||||||   ||||||| |||| |||||||||||||||  |||||||||||    
T  41788436 ttgaaggtaaagtgatttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtg 41788370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 790
Target Start/End: Original strand, 42481814 - 42481887
Alignment:
Q  717 agtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacatt 790  Q
    ||||||||||| ||||||  |||||||||   |||| ||||||||| |||||||||| ||||||| ||| ||||    
T  42481814 agtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgttcggatgcatt 42481887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 748 - 821
Target Start/End: Original strand, 44570695 - 44570768
Alignment:
Q  748 taaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttga 821  Q
    ||||||||||||||| ||||| |||| ||||||    || |||||||| ||||||||||||  |||||||||||    
T  44570695 taaaattgagttgaatgtaaagtgatttatgtttgattatattcatataaaagtgagttgataaataaatttga 44570768  T

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Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 278 - 403
Target Start/End: Complemental strand, 42510831 - 42510706
Alignment:
Q  278 ttaaaatgtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattg 377  Q
    ||||| |||||||| |||||||| ||| |||| ||||||  | ||||| ||||||||||||||||||| | |||||||||| |||| ||  |||||||||    
T  42510831 ttaaattgtggtgcaaaatttgaaaaattgactaaattgtttgacatttttcaatttaagggactaaactcctatttcgcagatttcaaggactaaattg 42510732  T
Q  378 accgatccttaaaatttcaaggacta 403  Q
    ||||| | ||| ||||||||||||||    
T  42510731 accgacctttacaatttcaaggacta 42510706  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 270 - 365
Target Start/End: Original strand, 2419931 - 2420026
Alignment:
Q  270 taaaacctttaaaatgtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttga 365  Q
    ||||||||||||| |||||||| |||||||| |||| ||| ||||||| | | ||| || |||||||| ||||||||||||||||| |||||||||    
T  2419931 taaaacctttaaattgtggtgcaaaatttgaaaaaaagactaaattgattgatatttttaaatttaagagactaaattgctatttcacaaatttga 2420026  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 737 - 823
Target Start/End: Original strand, 4894101 - 4894187
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagt 823  Q
    ||||||||  |||||||| ||||||||||||| |||| |||||| |||||||||||| | ||||||| ||||| |||||||||||||    
T  4894101 ttgattctagctaaaattaagttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatttgagt 4894187  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 737 - 824
Target Start/End: Original strand, 1976808 - 1976895
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||| ||| ||||||||||||||||||  ||  ||||||  ||||||||||| | |||||||||| |||||||||||||||||    
T  1976808 ttgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagtg 1976895  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 285 - 399
Target Start/End: Original strand, 8951318 - 8951432
Alignment:
Q  285 gtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatc 384  Q
    ||||||||||| ||   |||||||  ||||||| | | ||| |||||||||||||||||| |||||||||| |||||||| |  ||||||||||| || |    
T  8951318 gtggtgctaaacttacaaaaatgattaaattgattgatattattcaatttaagggactaatttgctatttcacaaatttggaggactaaattgacagacc 8951417  T
Q  385 cttaaaatttcaagg 399  Q
    |||| ||||||||||    
T  8951418 cttataatttcaagg 8951432  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 33643684 - 33643782
Alignment:
Q  268 cataaaacctttaaaat-gtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttga 365  Q
    ||||||||||||||| | |||||| |||||| || |||||||| | ||||||| |  |||||||||| ||||||  |||||||||||| ||||||||||    
T  33643684 cataaaacctttaaacttgtggtgttaaattcgaaaaaatgactagattgacttatgttgttcaattaaagggataaaattgctattttgcaaatttga 33643782  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 857 - 902
Target Start/End: Original strand, 10619001 - 10619046
Alignment:
Q  857 taatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||    
T  10619001 taatttctagcttcaactagaatcaattctaaaggcaaaatcaatt 10619046  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 749 - 818
Target Start/End: Original strand, 15220817 - 15220886
Alignment:
Q  749 aaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatt 818  Q
    |||| ||||||||| ||||| |||| ||||||  ||||||||||| | ||||||||||||||||||||||    
T  15220817 aaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 747 - 820
Target Start/End: Complemental strand, 16518909 - 16518836
Alignment:
Q  747 ctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttg 820  Q
    |||||| |||||||| ||||||||||| | ||||  ||||||||||| | |||||||||||||| |||||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttg 16518836  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 809
Target Start/End: Original strand, 680211 - 680306
Alignment:
Q  713 tttgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaa 809  Q
    ||||||||||||||| ||||||  |||| ||||||| ||||||||||||||||||| || | | ||||   |||||||||| | |||||||||||||    
T  680211 tttgagtgaattgattatgtaaagttgagtctgtct-aaattgagttgaaggtaaagtgttttgtgtttgcatacattcatgtaaaagtgagttgaa 680306  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 860 - 902
Target Start/End: Original strand, 37420260 - 37420302
Alignment:
Q  860 tttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  37420260 tttctagattctagtagaatcaattctagaggcaaaatcaatt 37420302  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 41513873 - 41513823
Alignment:
Q  327 ttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattg 377  Q
    |||||||||||||||||| ||||||||| |||||||||||  |||||||||    
T  41513873 ttcaatttaagggactaacttgctattttgcaaatttgaaggactaaattg 41513823  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 767 - 820
Target Start/End: Complemental strand, 9605297 - 9605244
Alignment:
Q  767 aaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttg 820  Q
    |||||||||||||  ||||||||| || | ||||||||||||||||||||||||    
T  9605297 aaatgatgtatgtatagatacatttatgtaaaagtgagttgaacaataaatttg 9605244  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 770 - 822
Target Start/End: Complemental strand, 11511061 - 11511009
Alignment:
Q  770 tgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgag 822  Q
    |||| |||||| || ||||||||||| |||||| |||||||||||||||||||    
T  11511061 tgatttatgtttagctacattcatataaaagtgggttgaacaataaatttgag 11511009  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 899
Target Start/End: Original strand, 680344 - 680379
Alignment:
Q  864 tagcttcaagtagaatcaattctagaggcaaaatca 899  Q
    ||||||||||||||||||||||| ||||||||||||    
T  680344 tagcttcaagtagaatcaattctggaggcaaaatca 680379  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 747 - 794
Target Start/End: Original strand, 14532772 - 14532819
Alignment:
Q  747 ctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcata 794  Q
    ||||||||||||||||  ||||||||| |||||| |||||||||||||    
T  14532772 ctaaaattgagttgaaaataaaatgatttatgtttagatacattcata 14532819  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 729 - 824
Target Start/End: Complemental strand, 44439403 - 44439308
Alignment:
Q  729 atgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    |||||||||||||  || ||| || |||||| || ||||| |||| ||||||  ||||  || || | ||||||||||||||||||||||||||||    
T  44439403 atgtaagtttgatcatggctataagtgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtg 44439308  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 868 - 902
Target Start/End: Complemental strand, 22536012 - 22535978
Alignment:
Q  868 ttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||||||||||||| ||||||||||||||    
T  22536012 ttcaagtagaatcaattctaaaggcaaaatcaatt 22535978  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 864 - 902
Target Start/End: Complemental strand, 31453401 - 31453363
Alignment:
Q  864 tagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  31453401 tagcttcaagtagaatcaattatagaggcaaaataaatt 31453363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 747 - 821
Target Start/End: Original strand, 40401597 - 40401671
Alignment:
Q  747 ctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttga 821  Q
    |||||| ||||||||||||| | | || ||||||  ||||||||||| | ||||| |||||||||||||| ||||    
T  40401597 ctaaaaatgagttgaaggtagactaatttatgtttggatacattcatgtaaaagtcagttgaacaataaacttga 40401671  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 858 - 901
Target Start/End: Complemental strand, 42982568 - 42982523
Alignment:
Q  858 aatttctagcttcaagtagaatc--aattctagaggcaaaatcaat 901  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||    
T  42982568 aatttctagcttcaagtagaatcaaaattctggaggcaaaatcaat 42982523  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 822
Target Start/End: Complemental strand, 16519585 - 16519500
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgag 822  Q
    ||||||||| ||| || ||| ||||| ||||| |||| ||| ||| |||||||||||   ||| || |||||||||||||||||||    
T  16519585 ttgattctggctagaagtgaattgaaagtaaagtgatttatattctgatacattcatgcaaaattgggttgaacaataaatttgag 16519500  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 861 - 902
Target Start/End: Original strand, 33019220 - 33019261
Alignment:
Q  861 ttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||||| || ||||||||||||||||| ||||||||    
T  33019220 ttctagcttcaaatataatcaattctagaggcagaatcaatt 33019261  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 821
Target Start/End: Complemental strand, 37287897 - 37287832
Alignment:
Q  756 agttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttga 821  Q
    ||||||||||||||| || |||||| | |||||||||| | | ||||||| |||||||||| ||||    
T  37287897 agttgaaggtaaaataatttatgtttatatacattcatgtaatagtgagtcgaacaataaaattga 37287832  T

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Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 739 - 902
Target Start/End: Complemental strand, 34621025 - 34620866
Alignment:
Q  739 gattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggnnnnnnnnntcaa 838  Q
    ||||||| ||| |||||||||||||||||| |||| ||||||  |||||||| || | ||||||||||||| ||||||||| ||||          ||||    
T  34621025 gattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtg----taaaaatcaa 34620930  T
Q  839 ttctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||| || |||| |||| ||||||||||||| |||||||||||||  |||||||||| ||||    
T  34620929 ttctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaaattaatt 34620866  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 739 - 902
Target Start/End: Complemental strand, 34748462 - 34748303
Alignment:
Q  739 gattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggnnnnnnnnntcaa 838  Q
    ||||||| ||| |||||||||||||||||| |||| ||||||  |||||||| || | ||||||||||||| ||||||||| ||||          ||||    
T  34748462 gattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtg----taaaaatcaa 34748367  T
Q  839 ttctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||| || |||| |||| ||||||||||||| |||||||||||||  |||||||||| ||||    
T  34748366 ttctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaaattaatt 34748303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 748 - 901
Target Start/End: Complemental strand, 882816 - 882667
Alignment:
Q  748 taaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggnnnnnnnnntcaattctaggat 847  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||   |||||||||| |||||||||||||| ||          |||||| | | ||    
T  882816 taaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatg----taaaaatcaatttttgaat 882721  T
Q  848 aagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaat 901  Q
     |||||||| | | | |||||||||||||||||| |||||||||| ||||||||    
T  882720 cagaacctagactgtttagcttcaagtagaatcagttctagaggccaaatcaat 882667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 835 - 904
Target Start/End: Complemental strand, 852579 - 852510
Alignment:
Q  835 tcaattctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatttt 904  Q
    |||||||||| || |||||||| ||||||||||||||||| ||||||||| | |||||||||| ||||||    
T  852579 tcaattctagaatcagaacctacaatttctagcttcaagttgaatcaattatggaggcaaaataaatttt 852510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 713 - 823
Target Start/End: Complemental strand, 9505935 - 9505825
Alignment:
Q  713 tttgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaa 812  Q
    ||||| |||||||||  |||||  || ||| || |||||||||||||||||| ||| |||| ||||||   ||| |||||| | |||||| |||||||||    
T  9505935 tttgaatgaattgattctgtaaagtttattttggctaaaattgagttgaaggcaaagtgatatatgttattatatattcatgtaaaagtgtgttgaacaa 9505836  T
Q  813 taaatttgagt 823  Q
    |||||||||||    
T  9505835 taaatttgagt 9505825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 28774090 - 28774165
Alignment:
Q  326 gttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggacta 403  Q
    |||||| |||||||| ||||||||||||| |||||||| | |  ||||||||||||||||||| ||||| ||||||||    
T  28774090 gttcaaattaagggattaaattgctattttgcaaatttcaga--ctaaattgaccgatccttataatttgaaggacta 28774165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 757 - 820
Target Start/End: Complemental strand, 8856428 - 8856365
Alignment:
Q  757 gttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttg 820  Q
    ||||||||||||||||| | ||||  ||||||||||| |||||||||||||||  |||||||||    
T  8856428 gttgaaggtaaaatgatttgtgtttggatacattcatgtgaaagtgagttgaaacataaatttg 8856365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 797 - 902
Target Start/End: Original strand, 1485150 - 1485251
Alignment:
Q  797 aaagtgagttgaacaataaatttgagtggnnnnnnnnntcaattctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaa 896  Q
    ||||||||||||||||||||||||||||          |||||||||| || | || ||  ||||||||| |||||||||||||||||||| ||||||||    
T  1485150 aaagtgagttgaacaataaatttgagtg----ttaaaatcaattctagaatcaaaagctccaatttctagattcaagtagaatcaattctaaaggcaaaa 1485245  T
Q  897 tcaatt 902  Q
    | ||||    
T  1485246 ttaatt 1485251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 714 - 780
Target Start/End: Complemental strand, 7953147 - 7953081
Alignment:
Q  714 ttgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgtt 780  Q
    |||||||||||||| ||| ||  ||||||||| | |||||||||||||||||||| |||| ||||||    
T  7953147 ttgagtgaattgattatgaaaaattgattctggccaaaattgagttgaaggtaaagtgatttatgtt 7953081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 861 - 902
Target Start/End: Complemental strand, 26280626 - 26280585
Alignment:
Q  861 ttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  26280626 ttctagcttcaagtggaatcaattcttgaggcaaaatcaatt 26280585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 380
Target Start/End: Original strand, 33493529 - 33493598
Alignment:
Q  311 aaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattgacc 380  Q
    ||||||||||||||||||||||||||   | ||||||||| |||| ||||||| ||| || |||||||||    
T  33493529 aaattgactaacattgttcaatttaaaaaattaaattgctgtttcacaaatttaaaagaccaaattgacc 33493598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 751 - 819
Target Start/End: Original strand, 32888915 - 32888983
Alignment:
Q  751 aattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaattt 819  Q
    ||||||||||||| ||||||||| ||||||   ||| ||| || | |||||||||||||||||||||||    
T  32888915 aattgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaacaataaattt 32888983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 902
Target Start/End: Original strand, 5724696 - 5724735
Alignment:
Q  863 ctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  5724696 ctagcttcaagtagaatcaattttggaggcaaaatcaatt 5724735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 824
Target Start/End: Complemental strand, 24982422 - 24982347
Alignment:
Q  749 aaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||||||||| |||  ||||||| |||   |||||||||| | ||||| |||||||||| |||||||||||    
T  24982422 aaaattgagttgaagttaaggtgatgtaagtttgtatacattcatgtaaaagtaagttgaacaaaaaatttgagtg 24982347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 824
Target Start/End: Original strand, 31305811 - 31305878
Alignment:
Q  757 gttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    |||||||||||||| || ||||||  |||| ||| || | |||||||||||| |||||||||||||||    
T  31305811 gttgaaggtaaaatcatttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtg 31305878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 746 - 824
Target Start/End: Complemental strand, 1349439 - 1349362
Alignment:
Q  746 tctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    |||||||||| ||||||| |||| |||| |||||| ||||||||| || | || |||||||||||||| || |||||||    
T  1349439 tctaaaattgggttgaagttaaagtgatttatgtt-agatacattaatctaaatgtgagttgaacaatcaacttgagtg 1349362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 837 - 887
Target Start/End: Complemental strand, 34063357 - 34063307
Alignment:
Q  837 aattctaggataagaacctataatttctagcttcaagtagaatcaattcta 887  Q
    |||||||| || |||||||| ||||||||||||  ||||||||||||||||    
T  34063357 aattctagaatgagaacctacaatttctagcttatagtagaatcaattcta 34063307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 31596969 - 31596936
Alignment:
Q  89 agcaatttaatccctcaaatttacaaaatagcaa 122  Q
    |||||||||||| |||||||||||||||||||||    
T  31596969 agcaatttaatctctcaaatttacaaaatagcaa 31596936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 34428151 - 34428192
Alignment:
Q  157 tcaatttagtccctccatcaaaatatctatttaataaacatc 198  Q
    ||||||||||||||||||||||||||||  || |||||||||    
T  34428151 tcaatttagtccctccatcaaaatatctcattcataaacatc 34428192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 737 - 824
Target Start/End: Original strand, 14058 - 14145
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||  ||| |||||||||||||||||| |||| ||||||  ||||||||||| ||||||||||||||| ||||||||||||||    
T  14058 ttgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtg 14145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 713 - 820
Target Start/End: Complemental strand, 32928057 - 32927950
Alignment:
Q  713 tttgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaa 812  Q
    |||||| |||||||| ||||||  ||||||||  |||||||||||||||||| ||| |||| | ||||  ||||||||||| | |||||||||||||| |    
T  32928057 tttgagggaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaacta 32927958  T
Q  813 taaatttg 820  Q
    ||||||||    
T  32927957 taaatttg 32927950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 256 - 416
Target Start/End: Complemental strand, 11567723 - 11567565
Alignment:
Q  256 catcaggagaagcataaaacctttaaaa-tgtggtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctattt 354  Q
    ||||| || ||||||||||||||||||| |||||||||||| |||  |||| ||| |||||| |  |||   |||||||||||||| | |||| | ||||    
T  11567723 catcaagataagcataaaacctttaaaattgtggtgctaaacttggaaaaaggactaaattggccgaca---ttcaatttaagggaatgaattaccattt 11567627  T
Q  355 cgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggactacattgttgattta 416  Q
     | ||||||||   |||||||||||||| ||||| |||||||||||||| | || |||||||    
T  11567626 tgtaaatttgagggactaaattgaccgacccttacaatttcaaggactaaaatgctgattta 11567565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 820
Target Start/End: Original strand, 16972008 - 16972091
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttg 820  Q
    ||||||| | |||||| |||||||||||||||||||| | ||||   |||||||||| | ||||||| ||||||||||||||||    
T  16972008 ttgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttg 16972091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 737 - 819
Target Start/End: Complemental strand, 8700977 - 8700895
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaattt 819  Q
    |||||| ||| ||||||||||||||||||||| | || |||||| | ||| |||| | | |||||||||||||||||| ||||    
T  8700977 ttgattatgtttaaaattgagttgaaggtaaagtaatttatgtttaaataaattcttgtaaaagtgagttgaacaatatattt 8700895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 864 - 902
Target Start/End: Complemental strand, 35495278 - 35495240
Alignment:
Q  864 tagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  35495278 tagcttcaagtagaatcaattctagaggcaaaattaatt 35495240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 751 - 824
Target Start/End: Complemental strand, 4950610 - 4950537
Alignment:
Q  751 aattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    |||||||||||||||||| |||| ||||||  |||| ||| ||  |||||||||||||| ||||||||| ||||    
T  4950610 aattgagttgaaggtaaagtgatttatgtttggatatatttatgagaaagtgagttgaaaaataaatttaagtg 4950537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 42458275 - 42458352
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaata 814  Q
    ||||||||| |||||||   ||||||||||||||  | ||||||| ||||||||||| | ||| ||||||||||||||    
T  42458275 ttgattctggctaaaatcatgttgaaggtaaaatagtttatgttcggatacattcatgtaaaaatgagttgaacaata 42458352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 748 - 824
Target Start/End: Complemental strand, 32767519 - 32767441
Alignment:
Q  748 taaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatg--aaagtgagttgaacaataaatttgagtg 824  Q
    ||||| ||||||| | ||||| |||| ||||||  ||||||||||| ||  ||||||||||||||||||||||| ||||    
T  32767519 taaaagtgagttggatgtaaattgatttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtg 32767441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 754 - 824
Target Start/End: Original strand, 37158638 - 37158709
Alignment:
Q  754 tgagttgaaggtaaaatgatgtatgttcagat-acattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    |||||| ||||||||||||| |||||   ||| |||||||  |||| |||||||||||||||||||||||||    
T  37158638 tgagttcaaggtaaaatgatttatgtcttgattacattcacgtgaaggtgagttgaacaataaatttgagtg 37158709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 749 - 819
Target Start/End: Complemental strand, 4554635 - 4554565
Alignment:
Q  749 aaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaattt 819  Q
    ||||||||||||||||||| ||||| | ||||  ||||||||| | | |||| | ||||||||||||||||    
T  4554635 aaaattgagttgaaggtaagatgatttgtgttttgatacattcctgtaaaagcgggttgaacaataaattt 4554565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 823
Target Start/End: Complemental strand, 35495368 - 35495315
Alignment:
Q  770 tgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagt 823  Q
    |||| ||||||  |||||||||| || ||||||| |||||||||||||||||||    
T  35495368 tgatttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagt 35495315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 717 - 904
Target Start/End: Original strand, 37334958 - 37335141
Alignment:
Q  717 agtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaa 816  Q
    ||||||||||| || |||  ||||||| | |||||||||||||||||||||| |||| |||||    |||||||||||| ||| ||||||||||||| ||    
T  37334958 agtgaattgattatataaaattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaa 37335057  T
Q  817 tttgagtggnnnnnnnnntcaattctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatttt 904  Q
    ||  ||||          |||||||||| || | || |||  ||||||| |||| |||| |||||||||| |||||||||||||||||    
T  37335058 ttcaagtg----taaaaatcaattctagaatcaaaagctacgatttctaacttctagtaaaatcaattctcgaggcaaaatcaatttt 37335141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 849 - 902
Target Start/End: Original strand, 7717373 - 7717426
Alignment:
Q  849 agaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  7717373 agaagctacaatttctagcttcaagtagaatcaattctggaggcaaaatcaatt 7717426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 858 - 902
Target Start/End: Complemental strand, 35058385 - 35058341
Alignment:
Q  858 aatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||    
T  35058385 aatttctagctccaagtagaatcaattcttgaggcaaaatcaatt 35058341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 737 - 824
Target Start/End: Complemental strand, 3776663 - 3776576
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||| |||||||||||||||| ||||| |||| |||| |  |||||||| || | |||||||||| | ||| |||||||||||    
T  3776663 ttgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtg 3776576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 859 - 902
Target Start/End: Complemental strand, 5406929 - 5406886
Alignment:
Q  859 atttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||||| ||||||||| |||||||||||||||||||||    
T  5406929 atttctagcttcgagtagaatccattctagaggcaaaatcaatt 5406886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 714 - 792
Target Start/End: Original strand, 1441328 - 1441406
Alignment:
Q  714 ttgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattca 792  Q
    ||||||||||| ||  |||||  |||||||||||||||| ||||||||| ||||| |||| | |||| |||||||||||    
T  1441328 ttgagtgaattaattttgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgatttgtgtttagatacattca 1441406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 783 - 824
Target Start/End: Complemental strand, 190921 - 190880
Alignment:
Q  783 gatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  190921 gatacattcacgtgaaagtgagttgaacaataaatttgagtg 190880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 861 - 902
Target Start/End: Original strand, 41115426 - 41115467
Alignment:
Q  861 ttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  41115426 ttctagcttcaagtagaatcaattctacaagcaaaatcaatt 41115467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 835 - 903
Target Start/End: Original strand, 25359612 - 25359680
Alignment:
Q  835 tcaattctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaattt 903  Q
    |||||| ||| |||| || ||| || ||||| |||||||||||||||||||| |||||| |||||||||    
T  25359612 tcaattatagaataaaaaactacaaattctaacttcaagtagaatcaattctggaggcagaatcaattt 25359680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 288 - 376
Target Start/End: Complemental strand, 44240702 - 44240614
Alignment:
Q  288 gtgctaaatttgataaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaatt 376  Q
    ||||||||||||   ||| ||| |||||||||  |||||||| ||||||||||||||||||| |||||  |||| ||||  ||||||||    
T  44240702 gtgctaaatttggagaaaagactaaattgactggcattgttctatttaagggactaaattgccatttcataaatatgaaggactaaatt 44240614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 756 - 824
Target Start/End: Original strand, 46853497 - 46853565
Alignment:
Q  756 agttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||||||| |||| |||||   |||| ||| || | ||||||||||||||||||||||||||||    
T  46853497 agttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaatttgagtg 46853565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 824
Target Start/End: Original strand, 35253411 - 35253498
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    |||||| || ||||||||||||| |||||||| |||| ||| ||  || ||| |||| | |||||||||||||  |||||||||||||    
T  35253411 ttgattttggctaaaattgagtttaaggtaaagtgatttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtg 35253498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 768
Target Start/End: Original strand, 44958562 - 44958617
Alignment:
Q  713 tttgagtgaattgatcatgtaagtttgattctgtctaaaattgagttgaaggtaaa 768  Q
    ||||||||||||||||||||||  |||||| || |||||| ||||||||| |||||    
T  44958562 tttgagtgaattgatcatgtaaaattgattttggctaaaagtgagttgaaagtaaa 44958617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 819
Target Start/End: Complemental strand, 7262938 - 7262873
Alignment:
Q  754 tgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaattt 819  Q
    ||||||||||||| |||| | ||||||  ||||||||||| | ||||||||||| || ||||||||    
T  7262938 tgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttggacgataaattt 7262873  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 763 - 824
Target Start/End: Original strand, 27266764 - 27266825
Alignment:
Q  763 ggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    |||||| |||| |||||| |||||  ||||| | ||||| ||||||||||||||||||||||    
T  27266764 ggtaaagtgatttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtg 27266825  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 748 - 902
Target Start/End: Original strand, 55927725 - 55927875
Alignment:
Q  748 taaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggnnnnnnnnntcaattctaggat 847  Q
    ||||||||||||| || |||  |||| ||||||  ||||||||||| | ||||||| ||||||||||||||||||||          |||||||||| ||    
T  55927725 taaaattgagttggagttaatgtgatttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtg----tgacgatcaattctagaat 55927820  T
Q  848 aagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
     |||| ||| ||||| |||| |||||| |||||||||||  ||||||||||||||    
T  55927821 cagaagctacaatttttagcctcaagtggaatcaattctgaaggcaaaatcaatt 55927875  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 42781213 - 42781287
Alignment:
Q  302 aaaatgacgaaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaatt 376  Q
    |||||||  |||||||||||||||||||||||||||||||| || || ||||| || ||||||||  ||||||||    
T  42781213 aaaatgaataaattgactaacattgttcaatttaagggactgaaatgatattttgccaatttgaagaactaaatt 42781287  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 835 - 902
Target Start/End: Original strand, 32818408 - 32818475
Alignment:
Q  835 tcaattctaggataagaacctataatttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    |||||||||| || | || ||| || |||||||||||| ||||||||||||| |||||||||||||||    
T  32818408 tcaattctagaatcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaatcaatt 32818475  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 737 - 824
Target Start/End: Complemental strand, 33843852 - 33843765
Alignment:
Q  737 ttgattctgtctaaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 824  Q
    ||||||||| |||||| ||||||| | ||||| |||| ||||||  |||| |||||| | | |||||||||||||||||||| |||||    
T  33843852 ttgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaattcgagtg 33843765  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 861 - 902
Target Start/End: Original strand, 29779118 - 29779159
Alignment:
Q  861 ttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  29779118 ttctagcttcaagtagaatcaattctacaagcaaaatcaatt 29779159  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 22900411 - 22900372
Alignment:
Q  326 gttcaatttaagggactaaattgctatttcgcaaatttga 365  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  22900411 gttcaatttatgggactaacttgctatttcgcaaatttga 22900372  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 22952079 - 22952040
Alignment:
Q  326 gttcaatttaagggactaaattgctatttcgcaaatttga 365  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  22952079 gttcaatttatgggactaacttgctatttcgcaaatttga 22952040  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 748 - 819
Target Start/End: Complemental strand, 47144344 - 47144273
Alignment:
Q  748 taaaattgagttgaaggtaaaatgatgtatgttcagatacattcatatgaaagtgagttgaacaataaattt 819  Q
    |||||||||||||||| || | |||| ||||||  ||||||||||| | ||||| ||||| |||||||||||    
T  47144344 taaaattgagttgaagatatattgatttatgtttggatacattcatctaaaagttagttggacaataaattt 47144273  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 14013902 - 14013947
Alignment:
Q  157 tcaatttagtccctccatcaaaatatctatttaataaacatccatc 202  Q
    ||||||||||||||| |||||||||| | |||| ||||||||||||    
T  14013902 tcaatttagtccctctatcaaaatatttctttagtaaacatccatc 14013947  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 24277365 - 24277332
Alignment:
Q  314 ttgactaacattgttcaatttaagggactaaatt 347  Q
    |||||| |||||||||||||||||||||||||||    
T  24277365 ttgacttacattgttcaatttaagggactaaatt 24277332  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 861 - 902
Target Start/End: Complemental strand, 26617489 - 26617448
Alignment:
Q  861 ttctagcttcaagtagaatcaattctagaggcaaaatcaatt 902  Q
    ||||||||||||||||||||| || | |||||||||||||||    
T  26617489 ttctagcttcaagtagaatcatttttggaggcaaaatcaatt 26617448  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 819
Target Start/End: Complemental strand, 41059029 - 41058980
Alignment:
Q  770 tgatgtatgttcagatacattcatatgaaagtgagttgaacaataaattt 819  Q
    |||| |||||||||||||||| |||| |||||| |||||||||| |||||    
T  41059029 tgatttatgttcagatacatttatataaaagtgggttgaacaatcaattt 41058980  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 41311 - 41390
Alignment:
Q  324 ttgttcaatttaagggactaaattgctatttcgcaaatttgaaatactaaattgaccgatccttaaaatttcaaggacta 403  Q
    |||||||||||||  |||||||||| ||||||| |||||| ||| |||||||| ||| |  |||| |||||||| |||||    
T  41311 ttgttcaatttaaaagactaaattgatatttcgtaaatttaaaagactaaattaaccaacacttacaatttcaatgacta 41390  T

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Target: scaffold0187 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 7549 - 7495
Alignment:
Q  311 aaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttga 365  Q
    ||||||| ||| ||| |||||||||| |||||||||||||| |||| ||||||||    
T  7549 aaattgaataatatttttcaatttaaaggactaaattgctacttcgtaaatttga 7495  T

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Target: scaffold0187; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 17877 - 17823
Alignment:
Q  311 aaattgactaacattgttcaatttaagggactaaattgctatttcgcaaatttga 365  Q
    ||||||| ||| ||| |||||||||| |||||||||||||| |||| ||||||||    
T  17877 aaattgaataatatttttcaatttaaaggactaaattgctacttcgtaaatttga 17823  T

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