View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_40 (Length: 540)
Name: NF8901_low_40
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 15 - 527
Target Start/End: Original strand, 46898918 - 46899430
Alignment:
| Q |
15 |
gacatcaggtggagacaaggcagcaaccaccaaattgggatgaagatcaaaaaatcattcacaagatgaagctgtgtaagaagtattacaatggtgagga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46898918 |
gacatcaggtggagacaaggcagcaaccaccaaattgggatgaagatcaaaaaatcattcacaagatgaagctgtgtaagaagtattacattggtgagga |
46899017 |
T |
|
| Q |
115 |
atgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgattcttggaaaacaagagagtattctgcaataagcgttgga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
46899018 |
atgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgcttcttggaaaacaagagagtgttctgcaataagcgttgga |
46899117 |
T |
|
| Q |
215 |
aatattggttctccaaagtcttttgggtatggttctaacaatttggaaggcattagggctgtgaacaagccagcaaggagcgcttattggaagactaagc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46899118 |
aatattggttctccaaagtcttttgggtatggttctaacaatttggaaggcattagggctgtgaacaagccagcaaggagtgcttattggaagactaagc |
46899217 |
T |
|
| Q |
315 |
tgtgtcaatggcagcatacagggagctgtccctttggggagacctgtgactttgctcatggagaagcaggtaatgttaactcatctgtttgttaatttcc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46899218 |
tgtgtcaatggcagcatacagggagctgtccctttggggagacctgtgactttgctcatggagaagcaggtaatgttaactcatctgtttgttaatttcc |
46899317 |
T |
|
| Q |
415 |
attctccctattttgattaatggttttgattttaactttatcatataattctactgtttttgtgttcttgtatgatgattatgtagaaggttattttctc |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46899318 |
attctccctattttgattaatggttttgattttaactttatcatataattctactgtttttgtgttcttctatgatgattatgtagaaggttattttctc |
46899417 |
T |
|
| Q |
515 |
tgatgtatgatgt |
527 |
Q |
| |
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||||||||||||| |
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| T |
46899418 |
tgatgtatgatgt |
46899430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 46 - 448
Target Start/End: Original strand, 46863833 - 46864220
Alignment:
| Q |
46 |
aaattgggatgaagatcaaaaaatcattcacaagatgaagctgtgtaagaagtattacaatggtgaggaatgtccttatggtgataagtgtagctttctt |
145 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||| || | || ||||| |||||||||| ||||| | |||| |||||||| |||| | |
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| T |
46863833 |
aaattgggaggaagatcaaaaattcattcacaagatgaagctatgcaggatgtattccaatggtgagaaatgtttctttggtagtaagtgtaattttcgt |
46863932 |
T |
|
| Q |
146 |
catgaggatcctgctaggtttagggatgattcttggaaaacaagagagtattctgcaataagcgttggaaatattggttctccaaagtcttttgggtatg |
245 |
Q |
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| T |
46863933 |
catgaggatcctgctaagtctagggatcattcttggaagtcaggagagtgttcttctataagcattgggactattggttcttcaaaatcatttgg----- |
46864027 |
T |
|
| Q |
246 |
gttctaacaatttggaaggcattagggctgtgaacaagccagcaaggagcgcttattggaagactaagctgtgt---caatggcagcatacagggagctg |
342 |
Q |
| |
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||| |||||||||||||||||||||||||| ||| || |||||||||||| ||| ||||| | ||||||||| ||||||||| |
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| T |
46864028 |
-------------ggatggcattagggctgtgaacaagccagctaggggcacttattggaagaataatatgtgtttccgttggcagcatcaagggagctg |
46864114 |
T |
|
| Q |
343 |
tccctttggggagacctgtgactttgctcatggagaagcaggtaatgttaactcatctgtttgttaatttccattctccctattttgattaatggttttg |
442 |
Q |
| |
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||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||| | |||| |||||| || ||||| ||||||||| |||| ||| |
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| T |
46864115 |
tccctttggggaggactgtcacttttctcatggagaagcaggtaataataactcatctttgtgttgatttcccttttcccttttttgattattggtcttg |
46864214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 46890548 - 46890619
Alignment:
| Q |
249 |
ctaacaatttggaaggcattagggctgtgaacaagccagcaaggagcgcttattggaagactaagctgtgtc |
320 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| |||||||||| ||||| |||||||||||||||||| |
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| T |
46890548 |
ctaataatttggaaggcagcagggctttgaacaagcaagcaaggagcacttatcggaagactaagctgtgtc |
46890619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 46890389 - 46890509
Alignment:
| Q |
57 |
aagatcaaaaaatcattcacaagatgaagctgtgtaagaagtattacaatggtgaggaatgtccttatggtgataagtgtagctttcttcatgaggatcc |
156 |
Q |
| |
|
||||| |||||||||| || | ||||| ||||| ||||| |||| |||||| ||||||||||| ||||| ||||| |||| || |||||||| ||||| |
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| T |
46890389 |
aagataaaaaaatcatacaaacaatgaaactgtgcaagaattattgcaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcc |
46890488 |
T |
|
| Q |
157 |
tgctaggtttagggatgattc |
177 |
Q |
| |
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||| ||||||||||||||| |
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| T |
46890489 |
tgcacagtttagggatgattc |
46890509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 22691982 - 22691886
Alignment:
| Q |
52 |
ggatgaagatcaaaaaatcattcacaagatgaagctgtgtaagaagtattacaatggtgaggaatgtccttatggtgataagtgtagctttcttcat |
148 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| || ||||| || ||||||||| | ||||||||||||| |||||||||||| ||||||||| |
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| T |
22691982 |
ggatgatgatcaaaaaatcattcacaagatggggctatgcaagaaatactacaatggtaaagaatgtccttatgatgataagtgtagttttcttcat |
22691886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 22691811 - 22691745
Alignment:
| Q |
247 |
ttctaacaatttggaaggcattagggctgtgaacaagccagcaaggagcgcttattggaagactaag |
313 |
Q |
| |
|
|||||| | ||||||||||| |||| |||||||||||||||||||| || |||| ||||||| |||| |
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| T |
22691811 |
ttctaatagtttggaaggcaataggtctgtgaacaagccagcaaggggcacttactggaagattaag |
22691745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 19845972 - 19846049
Alignment:
| Q |
243 |
atggttctaacaatttggaaggcattagggctgtgaacaagccagcaaggagcgcttattggaagactaagctgtgtc |
320 |
Q |
| |
|
|||||||||| ||||||||||| | |||| |||||||||||||||||||| || |||| ||||||| ||||||||||| |
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|
| T |
19845972 |
atggttctaataatttggaaggaaataggtctgtgaacaagccagcaaggggcacttactggaagattaagctgtgtc |
19846049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 19845811 - 19845907
Alignment:
| Q |
52 |
ggatgaagatcaaaaaatcattcacaagatgaagctgtgtaagaagtattacaatggtgaggaatgtccttatggtgataagtgtagctttcttcat |
148 |
Q |
| |
|
|||||| ||| | |||||||||||||||||| ||| || ||||| || ||||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
19845811 |
ggatgatgatgagaaaatcattcacaagatggggctatgcaagaaatactacaatggtgaggaatgtccttatggtgatacatgtatttttcttcat |
19845907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 234
Target Start/End: Original strand, 9150755 - 9150885
Alignment:
| Q |
104 |
aatggtgaggaatgtccttatggtgataagtgtagctttcttcatgaggatcctgctaggtttagggatgattcttggaaaacaagagagtattctgcaa |
203 |
Q |
| |
|
|||| |||||||| ||| |||||||| || |||||| ||||| |||||| ||| |||||||||||||| ||| | |||| |||||| | |||||||| |
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| T |
9150755 |
aatgatgaggaatatccctatggtgagaaatgtagccttcttaatgagggcccttctaggtttagggataattttaagaaattaagagattgttctgcaa |
9150854 |
T |
|
| Q |
204 |
taagcgttggaaatattggttctccaaagtc |
234 |
Q |
| |
|
||| | | | || |||||||||||||||||| |
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|
| T |
9150855 |
taaacatcgaaattattggttctccaaagtc |
9150885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 9150390 - 9150464
Alignment:
| Q |
26 |
gagacaaggcagcaaccaccaaattgggatgaagatcaaaaaatcattcacaagatgaagctgtgtaagaagtat |
100 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| | || | ||||| |||| |||||||||| |||| ||||||||| |
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| T |
9150390 |
gagataaggcagccaccacgaaattgggatggaaattagaaaattattctcaagatgaagttgtgcaagaagtat |
9150464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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