View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_41 (Length: 534)
Name: NF8901_low_41
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 37 - 519
Target Start/End: Complemental strand, 32502541 - 32502067
Alignment:
| Q |
37 |
aaaacttatatattttaagaatgttaatatagactccttctattaaataaaatagtttcaccaaatataatgctacactctctcacatatgatgaatcgt |
136 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32502541 |
aaaacttatatattttaagaatgttaatatggactccttctattaaataaaatagtttcaccaaatataatgctacactctctcacatatgatgaatcgt |
32502442 |
T |
|
| Q |
137 |
aacacaaaactagaactgatagatgttaaaccgatgttgcattaaatatttttatannnnnnnnnnacattttgaagatagaagttttgtattgtaaaat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32502441 |
aacacaaaactagaactgatagatgttaaaccgatgttgcattaaatatttttatatattttttatacattttgaagatagaagttttgtattgtaaaat |
32502342 |
T |
|
| Q |
237 |
tggattatgttgattttgtggtggaggtatctctggagtctaggggacgatcaattgtgaagagtgttgggtgggattaagggacttggcaccaaatagt |
336 |
Q |
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| T |
32502341 |
tggatcatgttgattttgtggtggaggtatctctggagtctaggggacgatgaatagtgaagagtgttgggtgggattaagagacttggcaccaaatagt |
32502242 |
T |
|
| Q |
337 |
aagtgttaagatgatttttgaagattcatgtttcccatttatttaaaacattattctccatgttatgtccaattttatgtttgaaaatgaaagaaagaaa |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32502241 |
aagtgttaagatgatttttgaagattcatgtttcccatttatttaaaacattattctc--------ttccaattttatgtttgaaaatgaaagaaagaaa |
32502150 |
T |
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| Q |
437 |
gaaaatgtagatttgtcacatttcacttgttgacgatatcccatctctgtagaatgaaagtagtcaaattgtgtgtttgaagt |
519 |
Q |
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| T |
32502149 |
gaaaatgtagacttgtcacatatcacttgttgaagatatcccatctctatagaatgaaagtagccaaattatgtgtttgaagt |
32502067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 31606813 - 31606844
Alignment:
| Q |
12 |
ttatactaaaattatggtttatttcaaaactt |
43 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31606813 |
ttatactaaaattatggtttatttcaaaactt |
31606844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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