View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_42 (Length: 498)
Name: NF8901_low_42
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_42 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Original strand, 33380989 - 33381417
Alignment:
| Q |
17 |
agagatggttccataaatccattgtaaaacaatggcatctaggcgtttccataaggctggattggtttctttgagagagggtgaggaagtgggatcggtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33380989 |
agagatggttccataaatccattgtaaaacaatggcatctaggcgtttccataaggctggattggtttctttgagagagggtgaggaagtgggatcggtt |
33381088 |
T |
|
| Q |
117 |
ggtgaaggggggatgatgtggtcgagaacatcatatgcttcggcatggattttgaataattcagaccatgtattgtattggattttctcaatgtcaaggg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33381089 |
ggtgaaggggggatgatgtggtcgagaacatcatatgcttcggcatggattttgaataattcagaccatgtattgtattggattttctcaatgtcaaggg |
33381188 |
T |
|
| Q |
217 |
tgactttgatgaagtttgtgatgttagaaacaatgagtgcagggtgaattggagatactgtggtttgggcagcatgtttggatgttgatttgggagaggg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33381189 |
tgactttgatgaagtttgtgatgttagaaacaatgagtgcagggtgaattggagatactgtggtttggacagcatgtttggatgttgatttgggagaggg |
33381288 |
T |
|
| Q |
317 |
gggaggagtattttcggccatgatgatttgaggaagtagggccggcggcaatttggaaggagttcattgagattttaaatattaatgtggtgacatt--a |
414 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33381289 |
gggaggagtattttcggccatgatgatttgaggaattagggccggcggcaatttggaaggagttcattgagattttaaatattaatgtggtgacattaca |
33381388 |
T |
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| Q |
415 |
atatttggaagaccaagttcagaatttac |
443 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
33381389 |
atatttggaagaccaagttcagaatttac |
33381417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 7016 - 6656
Alignment:
| Q |
17 |
agagatggttccataaatccattgtaaaacaatggcatctaggcgtttccataaggctggattggtttctttgagagagggtgaggaagtgggatcggtt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7016 |
agagatggttccataaatccattgtaaaacaatggcatctaggcatttccataaggctggattggtttctttgagagagggtgaggaagtgggatcggtt |
6917 |
T |
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| Q |
117 |
ggtgaaggggggatgatgtggtcgagaacatcatatgcttcggcatggattttgaataattcagaccatgtattgtattggattttctcaatgtcaaggg |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916 |
ggtgaaggggggatgatgtggtcgagaacatcatatgcttcggcatggattttgaataattcagaccatgtattgtattggattttctcaatgtcaaggg |
6817 |
T |
|
| Q |
217 |
tgactttgatgaagtttgtgatgttagaaacaatgagtgcagggtgaattggagatactgtggtttgggcagcatgtttggatgttgatttgggagaggg |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6816 |
tgactttgatgaagtttgtgatgttagaaacagtgagtgcagggtgaattggagatactgtggtttgggcagcatgtttggatgttgatttgggagaggg |
6717 |
T |
|
| Q |
317 |
gggaggagtattttcggccatgatgatttgaggaagtagggccggcggcaatttggaagga |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6716 |
gggaggagtattttcggccatgatgatttgaggaattagggccggcggcaatttggaagga |
6656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 30328599 - 30328239
Alignment:
| Q |
17 |
agagatggttccataaatccattgtaaaacaatggcatctaggcgtttccataaggctggattggtttctttgagagagggtgaggaagtgggatcggtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30328599 |
agagatggttccataaatccattgtaaaacaatggcatctaggcgtttccataaggctggattggtttctttgagagagggtgaggaagtgggatcggtt |
30328500 |
T |
|
| Q |
117 |
ggtgaaggggggatgatgtggtcgagaacatcatatgcttcggcatggattttgaataattcagaccatgtattgtattggattttctcaatgtcaaggg |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30328499 |
ggtgatggggggatgatgtggtcgagaacatcatatgcttcggcatggattttgaataattcagaccatgtattgtattggattttctcaatgttaaggg |
30328400 |
T |
|
| Q |
217 |
tgactttgatgaagtttgtgatgttagaaacaatgagtgcagggtgaattggagatactgtggtttgggcagcatgtttggatgttgatttgggagaggg |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30328399 |
tgactttgatgaagtttgtgatgttagaaacagtgagtgcaggatgaattggagatactgtggtttgggcagcatgtttggatgttgatttgggagaggg |
30328300 |
T |
|
| Q |
317 |
gggaggagtattttcggccatgatgatttgaggaagtagggccggcggcaatttggaagga |
377 |
Q |
| |
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|||||||||| ||||||||||| | |||||||||| |||||||| |||||||||||||||| |
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| T |
30328299 |
gggaggagtagtttcggccatggtaatttgaggaattagggccgacggcaatttggaagga |
30328239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 32311059 - 32311419
Alignment:
| Q |
17 |
agagatggttccataaatccattgtaaaacaatggcatctaggcgtttccataaggctggattggtttctttgagagagggtgaggaagtgggatcggtt |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32311059 |
agagatggttccataaatccattgtaaaacaatggcatctaggcgtttccataaggctggattggtttctttgagagagggtgaggaagtgggatcggtt |
32311158 |
T |
|
| Q |
117 |
ggtgaaggggggatgatgtggtcgagaacatcatatgcttcggcatggattttgaataattcagaccatgtattgtattggattttctcaatgtcaaggg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32311159 |
ggtgaaggggggatgatgtggtcgagaacatcatatgcttcggcatggattttgaataattcagaccatgtattgtattggattttctcaatgtcaaggg |
32311258 |
T |
|
| Q |
217 |
tgactttgatgaagtttgtgatgttagaaacaatgagtgcagggtgaattggagatactgtggtttgggcagcatgtttggatgttgatttgggagaggg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||||| |
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|
| T |
32311259 |
tgactttgatgaagtttgtgatgttagaaacagtgagtgcagggtgaattggagatacggtggtgtgagcagcatgtttggatgttgattggggagagga |
32311358 |
T |
|
| Q |
317 |
gggaggagtattttcggccatgatgatttgaggaagtagggccggcggcaatttggaagga |
377 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||| |
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| T |
32311359 |
gggaggagtaatttcggccatgatgatttgaggaattagggccggctgcaatttgaaagga |
32311419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 55154863 - 55154793
Alignment:
| Q |
126 |
gggatgatgtggtcgagaacatcatatgcttcggcatggattttgaataattcagaccatgtattgtattg |
196 |
Q |
| |
|
|||||||||||||| ||||| || || |||| || |||||||| ||||| |||||||||||||||||||| |
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|
| T |
55154863 |
gggatgatgtggtcaagaacctcgtaagcttgagcgtggattttaaataactcagaccatgtattgtattg |
55154793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 16810061 - 16810008
Alignment:
| Q |
159 |
gcatggattttgaataattcagaccatgtattgtattggattttctcaatgtca |
212 |
Q |
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||||| |||||||| || || || |||||||||||||| ||||||||||||||| |
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| T |
16810061 |
gcatgcattttgaacaactcggatcatgtattgtattgaattttctcaatgtca |
16810008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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