View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_44 (Length: 481)
Name: NF8901_low_44
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 229 - 464
Target Start/End: Original strand, 24215553 - 24215788
Alignment:
| Q |
229 |
ccaattttaagacattcactcatatatataacagcactaaaaaatcacaaagataaaacgaaacaaaacacaatacacacgaataattgaaatcaagtct |
328 |
Q |
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| T |
24215553 |
ccaattttaagacattcactcatatatataacagcactaaaaaatcacaaagataaaacgatacaaaacacaatacacacgaataattgaaatcaagtct |
24215652 |
T |
|
| Q |
329 |
gacgagaatagagacgacgaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctact |
428 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24215653 |
gacgagaatagagacgacaaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctact |
24215752 |
T |
|
| Q |
429 |
catagaaatgttctgcggcttctcaacaatcttccc |
464 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
24215753 |
catagaaatgttatgcggcttctcaacaatcttccc |
24215788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 24215339 - 24215494
Alignment:
| Q |
8 |
cacagagaatcaaacacataaataagttgagaaataaagcaagaaaagtaaaatttgcacaattgaaaaatccttcaaatctgaagttttaataacttca |
107 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24215339 |
cacagagaatcaaacatataaataagtagagaaataaagcaagaaaagtaaaatttgcacaattgaaaaatccttcaaatctgaagttttaataacttca |
24215438 |
T |
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| Q |
108 |
atccaaaatctatacataatattaacaacgacacaaacacagaattatcgaaggaccactcg |
169 |
Q |
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| T |
24215439 |
atccaaaatctatacataat------aatgacacaaacacagaattatcgaaggaccactcg |
24215494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 408
Target Start/End: Original strand, 24224388 - 24224547
Alignment:
| Q |
251 |
tatatataacagcactaaaaaatcacaaagataaaacgaaacaaaacacaatacacac--gaataattgaaatcaagtctgacgagaatagagacgacga |
348 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||| |||| ||||||| ||| || |||| ||||||||||| |||| ||||| ||||| ||| |
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| T |
24224388 |
tataaataacagcactgaaaaatcacaaagataaaacaaaaccaaacacagaacatacatgaatcattgaaatcaattctgctttgaataaagacggcga |
24224487 |
T |
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| Q |
349 |
ccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagc |
408 |
Q |
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|| |||||||| |||||||||||||||||||| ||||| |||||||||||| || ||||| |
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| T |
24224488 |
ccaatctcaaacgaaacaaaagcatcaacagtagcatatttaacctgatcaacattaagc |
24224547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 332 - 436
Target Start/End: Original strand, 24209902 - 24210006
Alignment:
| Q |
332 |
gagaatagagacgacgaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctactcat |
431 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||| |||||| ||| | || |||||||||||||||| |
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| T |
24209902 |
gagaatagagacgacgaccaatctcaaaggaaacaaaagcatcaacagttgcaaatttaacctgaatagcactgagccaaggattatcccacctactcat |
24210001 |
T |
|
| Q |
432 |
agaaa |
436 |
Q |
| |
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|||| |
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|
| T |
24210002 |
cgaaa |
24210006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 464
Target Start/End: Complemental strand, 24229652 - 24229515
Alignment:
| Q |
327 |
ctgacgagaatagagacgacgaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccaccta |
426 |
Q |
| |
|
|||| ||||||| ||||||||| | |||||||| |||| ||||||||||||||| ||||||||||||||||| | ||||| || ||||||||||| |
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|
| T |
24229652 |
ctgatgagaataaagacgacgagcaatctcaaaggaaagaaaagcatcaacagtagcatacttaacctgatcccaatcaagcattggattatcccaccta |
24229553 |
T |
|
| Q |
427 |
ctcatagaaatgttctgcggcttctcaacaatcttccc |
464 |
Q |
| |
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||| | | ||| || ||||||||||||||||||||| |
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| T |
24229552 |
ctcctcgtaatcctcgacggcttctcaacaatcttccc |
24229515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 24224258 - 24224307
Alignment:
| Q |
64 |
gcacaattgaaaaatccttcaaatctgaagttttaataacttcaatccaa |
113 |
Q |
| |
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|||||| ||| |||||| |||||||| |||||||||| |||||||||||| |
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| T |
24224258 |
gcacaaatgataaatccatcaaatcttaagttttaatgacttcaatccaa |
24224307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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