View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_45 (Length: 468)
Name: NF8901_low_45
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 6 - 452
Target Start/End: Original strand, 9377927 - 9378375
Alignment:
| Q |
6 |
aatgagatggacatcatatctttatccaaaatcttaaaccattgagtttatggatcccatcacaatctgaatttttcttgctcaaagtttacttttctaa |
105 |
Q |
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| T |
9377927 |
aatgagttgaacatcatatctttatccaaaatcttaaaccattgagtttatggatcccatcacaatctgaattattcttgctcaaagtttacttttctaa |
9378026 |
T |
|
| Q |
106 |
acaatgtgagatttctgattctcattgctccaccacaaaaagaaggatgatgtcctattgttgctacatttagatgctcctcctctctttgacgtttctc |
205 |
Q |
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| T |
9378027 |
acaatgtgagatttctgattctcattgctccaccataaaaagaaggatgatgtcctattgttgctacatttagatgctcctcctctctttgacgtttctc |
9378126 |
T |
|
| Q |
206 |
ctgctttattaacaacgacatagaaggggaaacattataataaatttgtttatacaatttggagtttagtgttattcaagtaattgcaaccatcctcatc |
305 |
Q |
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| T |
9378127 |
ctgctttattaacaacggcatagaaggggaaacaatataataagtttgtttatacaatttggagtttagtgttattcaagtaattgcaaccatcctcatc |
9378226 |
T |
|
| Q |
306 |
cgtattg-ttttttagttaatcctctggtttttagggaaaatgggctctgataatccggagttcggttatgaggtaaagatgatatgacctagaattgtt |
404 |
Q |
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| T |
9378227 |
cgtattgtttttttagttaatcctctggtttttagggaaaatgggctctgataatccggagttcggttatgaggtaaatatgatatgacctagaattgtt |
9378326 |
T |
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| Q |
405 |
ccacacaataatcgaactcggattct-ccgaaccatccgtccttggtga |
452 |
Q |
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| T |
9378327 |
ccacacagtaatggaactcggattctcccgaacgatccgtccttggtga |
9378375 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 35581174 - 35581126
Alignment:
| Q |
321 |
ttaatcctctggtttttagggaaaatgggctctgataatccggagttcg |
369 |
Q |
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| T |
35581174 |
ttaatcctttggtttttagggaaaatagattctgataattcggagttcg |
35581126 |
T |
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