View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_55 (Length: 434)

Name: NF8901_low_55
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_55
NF8901_low_55
[»] chr5 (3 HSPs)
chr5 (115-424)||(1277819-1278136)
chr5 (4-49)||(1278202-1278247)
chr5 (292-340)||(41462659-41462706)
[»] chr8 (5 HSPs)
chr8 (289-391)||(16222564-16222667)
chr8 (291-339)||(45357159-45357207)
chr8 (289-339)||(5970854-5970904)
chr8 (289-338)||(2887891-2887940)
chr8 (289-338)||(3146597-3146646)
[»] chr2 (4 HSPs)
chr2 (289-391)||(12172363-12172465)
chr2 (296-339)||(30558179-30558222)
chr2 (289-339)||(30381295-30381345)
chr2 (289-339)||(43922844-43922894)
[»] chr1 (5 HSPs)
chr1 (291-340)||(12632194-12632243)
chr1 (291-340)||(45427051-45427100)
chr1 (290-340)||(19623032-19623082)
chr1 (291-339)||(38193856-38193904)
chr1 (289-340)||(26076029-26076080)
[»] chr4 (6 HSPs)
chr4 (289-337)||(29231794-29231842)
chr4 (291-340)||(50510278-50510327)
chr4 (289-340)||(49381451-49381502)
chr4 (289-336)||(33806637-33806683)
chr4 (349-391)||(19178704-19178746)
chr4 (350-382)||(3066985-3067017)
[»] chr7 (4 HSPs)
chr7 (290-391)||(32055383-32055482)
chr7 (290-339)||(12099880-12099929)
chr7 (291-336)||(20371775-20371820)
chr7 (291-340)||(22710038-22710087)
[»] chr6 (1 HSPs)
chr6 (289-334)||(2245364-2245408)
[»] chr3 (1 HSPs)
chr3 (350-391)||(1691681-1691721)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 115 - 424
Target Start/End: Complemental strand, 1278136 - 1277819
Alignment:
Q  115 tatctggaaatacggatatgactttggcactttgaaaaggaaacgccgttttgaagtttttgttatctttttagctagtatgtggttagaaaatcatatt 214  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1278136 tatctggaaatatggatatgactttggcactttgaaaaggaaacgccgttttgaagtttttgttatcttttcagctagtatgtggttagaaaatcatatt 1278037  T
Q  215 tccaattcccgtaaaaggaataaaccacgaatcgtcataatttgaaagatcaacatacttttattattcttcatgcttaaatgcaattttgatcatccta 314  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1278036 tccaattcccgtaaaaggaataaaccacaaatcgtcataatttgaaagatcaacatacttttattattcttcatgcttaaatgcaattttgatcctccta 1277937  T
Q  315 ttttcaaaattgttaacttttgatac--------nnnnnnnnataaaacatgttttttgatccccctatttaaaaagttaacaaannnnnnnggtccccc 406  Q
    ||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  1277936 ttttcaaaattgttaacttttgatactttttattttatttttataaaacatgttttttgatccccctatttaaaaagttaacaaatttttttggtccccc 1277837  T
Q  407 tccccttcaggatgatgt 424  Q
    ||||||||||||||||||    
T  1277836 tccccttcaggatgatgt 1277819  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 1278247 - 1278202
Alignment:
Q  4 ggagcagcacagataaggcacgagagaatccaattccgttctaatc 49  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||    
T  1278247 ggagctgcacaaaaaaggcacgagagaatccaattccgttctaatc 1278202  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 41462659 - 41462706
Alignment:
Q  292 taaatgcaattttgatcatcctattttcaaaattgttaacttttgatac 340  Q
    |||||||||||||||||  |||||||| ||||||||||| |||||||||    
T  41462659 taaatgcaattttgatcc-cctatttttaaaattgttaatttttgatac 41462706  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 391
Target Start/End: Complemental strand, 16222667 - 16222564
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatacnnnnnnnnataaaacatgttttttgat-ccccctatttaaaaagttaa 387  Q
    |||||||| |||||||||||  ||||||||  ||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||| ||    
T  16222667 gcttaaatccaattttgatccccctattttagaaattgttaacttttgatacccctttttctaaaacatgttttttgatcccccctatttaaaaagtgaa 16222568  T
Q  388 caaa 391  Q
    ||||    
T  16222567 caaa 16222564  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 45357207 - 45357159
Alignment:
Q  291 ttaaatgcaattttgatcatcctattttcaaaattgttaacttttgata 339  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  45357207 ttaaatgcaattttgatcctcctatttttaaaattgttaacttttgata 45357159  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 5970854 - 5970904
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttgata 339  Q
    ||||||||||||||||||||  |||||||| ||||||||||| ||||||||    
T  5970854 gcttaaatgcaattttgatccccctatttttaaaattgttaatttttgata 5970904  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 2887891 - 2887940
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttgat 338  Q
    ||||||||||||||||| ||  | |||||||| |||||||||||||||||    
T  2887891 gcttaaatgcaattttggtctccatattttcataattgttaacttttgat 2887940  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 3146646 - 3146597
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttgat 338  Q
    ||||||||||||||||| ||  | |||||||| |||||||||||||||||    
T  3146646 gcttaaatgcaattttggtccccatattttcataattgttaacttttgat 3146597  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 391
Target Start/End: Original strand, 12172363 - 12172465
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatacnnnnnnnnataaaacatgttttttgatccccctatttaaaaagttaac 388  Q
    ||||||||| ||||||||||  |||||||| |||||||| ||||| ||||||         ||||||||||||||||| ||||||||||||||||| |||    
T  12172363 gcttaaatgtaattttgatccccctatttttaaaattgtaaacttgtgataccattttttctaaaacatgttttttgacccccctatttaaaaagtcaac 12172462  T
Q  389 aaa 391  Q
    |||    
T  12172463 aaa 12172465  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 30558179 - 30558222
Alignment:
Q  296 tgcaattttgatcatcctattttcaaaattgttaacttttgata 339  Q
    |||||||||||||  | |||||||||||||||||||||||||||    
T  30558179 tgcaattttgatccccatattttcaaaattgttaacttttgata 30558222  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 30381345 - 30381295
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttgata 339  Q
    ||||||||| |||| |||||  |||||||| ||||||||||||||||||||    
T  30381345 gcttaaatgtaattctgatccccctatttttaaaattgttaacttttgata 30381295  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 43922844 - 43922894
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttgata 339  Q
    |||||||||||||||||||| |||||| ||  || ||||||||||||||||    
T  43922844 gcttaaatgcaattttgatcctcctatatttgaatttgttaacttttgata 43922894  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 12632243 - 12632194
Alignment:
Q  291 ttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatac 340  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  12632243 ttaaatgcaattttgatctccctattttcaaaattgttaacttttgatac 12632194  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 45427051 - 45427100
Alignment:
Q  291 ttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatac 340  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  45427051 ttaaatgcaattttgatccccctattttcaaaattgttaacttttgatac 45427100  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 19623032 - 19623082
Alignment:
Q  290 cttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatac 340  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  19623032 cttaaatgcaattttgatctccctattttcaaaattgttaagttttgatac 19623082  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 38193856 - 38193904
Alignment:
Q  291 ttaaatgcaattttgatcatcctattttcaaaattgttaacttttgata 339  Q
    |||||||||||||||||   |||||||||||||| ||||||||||||||    
T  38193856 ttaaatgcaattttgattcccctattttcaaaatcgttaacttttgata 38193904  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 26076080 - 26076029
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatac 340  Q
    ||||||||||||||||||||  ||||||||| || ||||||| |||||||||    
T  26076080 gcttaaatgcaattttgatccccctattttctaatttgttaatttttgatac 26076029  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 29231794 - 29231842
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttga 337  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||    
T  29231794 gcttaaatgcaattttgatcctcatattttcaaaattgttaacttttga 29231842  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 50510278 - 50510327
Alignment:
Q  291 ttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatac 340  Q
    |||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  50510278 ttaaatgcaattttgatcctcctattttcaatcttgttaacttttgatac 50510327  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 49381502 - 49381451
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatac 340  Q
    ||||||||||||||||||||  | |||||| |||||||||||||||||||||    
T  49381502 gcttaaatgcaattttgatctccttatttttaaaattgttaacttttgatac 49381451  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 336
Target Start/End: Original strand, 33806637 - 33806683
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttttg 336  Q
    |||||||||||||||||||| || |||||| |||||||||||||||||    
T  33806637 gcttaaatgcaattttgatcctc-tatttttaaaattgttaacttttg 33806683  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 19178704 - 19178746
Alignment:
Q  349 ataaaacatgttttttgatccccctatttaaaaagttaacaaa 391  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||    
T  19178704 ataaaacatgttttttgattcccttatttaaaaagtcaacaaa 19178746  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 3067017 - 3066985
Alignment:
Q  350 taaaacatgttttttgatccccctatttaaaaa 382  Q
    ||||||||||||||||||||| |||||||||||    
T  3067017 taaaacatgttttttgatccctctatttaaaaa 3066985  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 391
Target Start/End: Complemental strand, 32055482 - 32055383
Alignment:
Q  290 cttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatacnnnnnnnnataaaacatgttttttgatccccctatttaaaaagttaaca 389  Q
    ||||||||||||||| |||   |||||||| ||||||||||||||||||||         |||||||||||||||||| ||||||||| |||||||||||    
T  32055482 cttaaatgcaattttaatccctctattttcgaaattgttaacttttgatacccttttcc-taaaacatgttttttgat-cccctattttaaaagttaaca 32055385  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 12099929 - 12099880
Alignment:
Q  290 cttaaatgcaattttgatcatcctattttcaaaattgttaacttttgata 339  Q
    ||||||| |||| |||||| ||||||||| ||||||||||| ||||||||    
T  12099929 cttaaatacaatattgatcctcctatttttaaaattgttaatttttgata 12099880  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 20371775 - 20371820
Alignment:
Q  291 ttaaatgcaattttgatcatcctattttcaaaattgttaacttttg 336  Q
    ||||||||||||||||||  | |||||||||| |||||||||||||    
T  20371775 ttaaatgcaattttgatccccttattttcaaatttgttaacttttg 20371820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 22710087 - 22710038
Alignment:
Q  291 ttaaatgcaattttgatcatcctattttcaaaattgttaacttttgatac 340  Q
    ||||||||||||||||||  |||||||| ||| |||| ||||||||||||    
T  22710087 ttaaatgcaattttgatccccctatttttaaatttgtgaacttttgatac 22710038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 2245408 - 2245364
Alignment:
Q  289 gcttaaatgcaattttgatcatcctattttcaaaattgttaacttt 334  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||    
T  2245408 gcttaaatgcaattttgat-atctttttttcaaaattgttaacttt 2245364  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 1691721 - 1691681
Alignment:
Q  350 taaaacatgttttttgatccccctatttaaaaagttaacaaa 391  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  1691721 taaaacatgtttttt-atccccctatttaaaaagtcaacaaa 1691681  T

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